Initializing AMReX (23.11-14-g175b99d913dc)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.11-14-g175b99d913dc) initialized Starting run at 06:28:45 UTC on 2023-11-20. Successfully read inputs file ... Castro git describe: 23.11-6-gb720d68fa AMReX git describe: 23.11-14-g175b99d91 Microphysics git describe: 23.11-9-ge9e31f40 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014717226 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.373854313 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.355670477 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.361579379 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.335855726 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.361127631 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.339179659 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.309817496 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.307670857 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.30959995 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.308218196 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009849888 seconds Ending run at 06:28:49 UTC on 2023-11-20. Run time = 3.564301341 Run time without initialization = 3.377662667 Average number of zones advanced per microsecond: 0.776 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.563 ... 3.564 ... 3.564 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3015 2.3621 2.4108 67.64% Gravity::make_radial_gravity() 21 0.2926 0.309 0.3176 8.91% check_for_negative_density() 10 0.04904 0.1013 0.1642 4.61% Castro::initData() 1 0.04885 0.08593 0.1222 3.43% Castro::estTimeStep() 21 0.02604 0.0703 0.1073 3.01% amrex::Copy() 193 0.07385 0.08084 0.08974 2.52% FabArray::setVal() 143 0.06431 0.07638 0.08912 2.50% FabArray::ParallelCopy_finish() 41 0.03772 0.05448 0.06507 1.83% Castro::reset_internal_energy(Fab) 1008 0.04431 0.04723 0.04945 1.39% FabArray::ParallelCopy_nowait() 41 0.04045 0.04267 0.04459 1.25% Castro::normalize_species() 62 0.04099 0.0421 0.04312 1.21% StateData::FillBoundary(geom) 41 0.03038 0.0334 0.03881 1.09% FillPatchIterator::Initialize 41 0.02857 0.034 0.03713 1.04% Gravity::interpolate_monopole_grav() 21 0.0273 0.02947 0.03105 0.87% Castro::construct_new_gravity_source() 10 0.02235 0.02643 0.03092 0.87% Castro::initialize_do_advance() 10 0.01806 0.01971 0.02246 0.63% Castro::computeTemp() 63 0.01699 0.01934 0.02063 0.58% VisMF::Write(FabArray) 2 0.01208 0.0127 0.01536 0.43% Castro::initialize_advance() 10 0.009362 0.01221 0.01508 0.42% FabArray::Saxpy() 20 0.01276 0.01383 0.01502 0.42% MultiFab::contains_nan() 20 0.01063 0.01172 0.01314 0.37% FabArray::setDomainBndry() 41 0.008038 0.01004 0.01095 0.31% Castro::construct_old_gravity_source() 10 0.009913 0.01037 0.01081 0.30% Amr::writePlotFile() 2 0.006446 0.009073 0.009711 0.27% Castro::initMFs() 1 0.006363 0.006752 0.008028 0.23% Castro::enforce_min_density() 62 0.007346 0.00755 0.007769 0.22% Castro::construct_new_source() 50 0.005948 0.006263 0.00649 0.18% StateData::define() 4 0.005257 0.005494 0.005937 0.17% Castro::swap_state_time_levels() 10 0.003323 0.00448 0.005093 0.14% main() 1 0.003585 0.004153 0.004491 0.13% Amr::coarseTimeStep() 10 0.001382 0.002682 0.004261 0.12% Gravity::get_new_grav_vector() 11 0.002891 0.00347 0.00406 0.11% Gravity::get_old_grav_vector() 10 0.001515 0.001997 0.00234 0.07% Castro::buildMetrics() 1 0.001501 0.001561 0.001733 0.05% Castro::finalize_do_advance() 10 0.001039 0.001279 0.001507 0.04% AmrLevel::FillPatch() 41 0.0008129 0.001001 0.001123 0.03% Amr::InitAmr() 1 0.0002619 0.0002901 0.0003849 0.01% Amr::timeStep() 10 0.0001633 0.0002258 0.0003794 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002752 0.0002988 0.0003614 0.01% Castro::do_advance_ctu() 10 0.0001151 0.0001521 0.0001891 0.01% Castro::clean_state() 62 0.000138 0.0001492 0.0001603 0.00% StateDataPhysBCFunct::() 41 0.0001003 0.0001096 0.0001242 0.00% FillPatchIterator::FillFromLevel0() 41 9.956e-05 0.0001111 0.0001186 0.00% DistributionMapping::LeastUsedCPUs() 1 7.608e-06 9.29e-05 0.0001111 0.00% Castro::finalize_advance() 10 7.811e-05 9.307e-05 0.0001082 0.00% Castro::do_old_sources() 10 7.159e-05 8.876e-05 9.805e-05 0.00% Amr::FinalizeInit() 1 4.136e-06 1.658e-05 9.619e-05 0.00% Castro::enforce_consistent_e() 1 7.884e-05 8.735e-05 9.308e-05 0.00% FabArray::ParallelCopy() 41 7.572e-05 8.287e-05 8.892e-05 0.00% Castro::Castro() 1 5.927e-05 6.958e-05 8.196e-05 0.00% Castro::construct_old_source() 50 6.189e-05 7.487e-05 8.169e-05 0.00% Castro::do_new_sources() 10 5.395e-05 6.681e-05 7.648e-05 0.00% FillPatchSingleLevel 41 5.705e-05 6.503e-05 7.17e-05 0.00% Amr::writeSmallPlotFile() 1 2.871e-05 5.109e-05 6.971e-05 0.00% FabArrayBase::getCPC() 41 4.196e-05 4.983e-05 6.74e-05 0.00% Castro::subcycle_advance_ctu() 10 4.749e-05 5.303e-05 6.165e-05 0.00% Castro::apply_source_to_state() 20 3.541e-05 4.581e-05 5.96e-05 0.00% Castro::construct_new_gravity() 10 3.234e-05 4.214e-05 5.909e-05 0.00% Castro::advance() 10 3.38e-05 4.521e-05 5.558e-05 0.00% Amr::defBaseLevel() 1 2.777e-05 3.665e-05 4.378e-05 0.00% Castro::construct_old_gravity() 10 3.238e-05 3.646e-05 4.067e-05 0.00% FabArrayBase::CPC::define() 2 2.134e-05 2.736e-05 3.377e-05 0.00% Castro::check_for_nan() 20 2.188e-05 2.662e-05 3.28e-05 0.00% Castro::enforce_speed_limit() 62 2.627e-05 2.786e-05 3.188e-05 0.00% Castro::expand_state() 10 2.127e-05 2.532e-05 2.795e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.185e-05 1.973e-05 2.376e-05 0.00% Castro::post_init() 1 1.278e-05 1.469e-05 1.717e-05 0.00% Castro::post_timestep() 10 1.173e-05 1.359e-05 1.483e-05 0.00% Gravity::set_mass_offset() 10 9.078e-06 1.109e-05 1.394e-05 0.00% Castro::retry_advance_ctu() 10 6.199e-06 9.263e-06 1.348e-05 0.00% Gravity::swapTimeLevels() 10 7.015e-06 9.691e-06 1.175e-05 0.00% Amr::initSubcycle() 1 9.654e-06 1.018e-05 1.13e-05 0.00% Castro::create_source_corrector() 10 8.417e-06 9.615e-06 1.125e-05 0.00% Castro::computeNewDt() 9 7.814e-06 8.28e-06 9.045e-06 0.00% Castro::FluxRegCrseInit 10 6.37e-06 7.746e-06 8.89e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.554e-06 4.612e-06 6.444e-06 0.00% Amr::InitializeInit() 1 1.925e-06 3.057e-06 5.088e-06 0.00% Castro::computeInitialDt() 2 3.224e-06 4.033e-06 5.039e-06 0.00% Castro::post_regrid() 1 2.276e-06 3.038e-06 4.009e-06 0.00% Castro::FluxRegFineAdd() 10 2.269e-06 2.489e-06 2.955e-06 0.00% Amr::init() 1 2.107e-06 2.391e-06 2.766e-06 0.00% Amr::initialInit() 1 1.249e-06 1.871e-06 2.268e-06 0.00% DistributionMapping::Distribute() 1 8.41e-07 9.217e-07 1.026e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.563 3.564 3.564 100.00% Amr::coarseTimeStep() 10 3.363 3.363 3.363 94.36% Amr::timeStep() 10 3.348 3.35 3.351 94.02% Castro::advance() 10 3.333 3.334 3.335 93.55% Castro::subcycle_advance_ctu() 10 3.243 3.252 3.262 91.52% Castro::do_advance_ctu() 10 3.243 3.252 3.262 91.51% Castro::construct_ctu_hydro_source() 10 2.481 2.485 2.487 69.77% Gravity::make_radial_gravity() 21 0.312 0.3256 0.3337 9.36% AmrLevel::FillPatch() 41 0.1906 0.2073 0.2256 6.33% Gravity::get_new_grav_vector() 11 0.2216 0.2233 0.2247 6.30% Castro::construct_new_gravity() 10 0.1973 0.1984 0.1995 5.60% Castro::construct_old_gravity() 10 0.1799 0.1895 0.1959 5.50% Gravity::get_old_grav_vector() 10 0.1787 0.1886 0.1952 5.48% FillPatchIterator::Initialize 41 0.1609 0.175 0.1906 5.35% Castro::initialize_do_advance() 10 0.1623 0.1752 0.1881 5.28% Amr::init() 1 0.1861 0.1862 0.1862 5.22% Amr::initialInit() 1 0.1711 0.1714 0.1716 4.81% check_for_negative_density() 10 0.04904 0.1013 0.1642 4.61% FillPatchIterator::FillFromLevel0() 41 0.1129 0.131 0.1442 4.05% FillPatchSingleLevel 41 0.1127 0.1309 0.1441 4.04% Amr::InitializeInit() 1 0.06867 0.1064 0.1427 4.00% Amr::defBaseLevel() 1 0.06866 0.1064 0.1427 4.00% Castro::expand_state() 10 0.1033 0.1175 0.1308 3.67% Castro::initData() 1 0.05284 0.08991 0.1261 3.54% Castro::clean_state() 62 0.1101 0.1158 0.1193 3.35% FabArray::ParallelCopy() 41 0.08075 0.09731 0.1092 3.06% Castro::estTimeStep() 21 0.02604 0.0703 0.1073 3.01% Amr::FinalizeInit() 1 0.02834 0.065 0.1026 2.88% Castro::do_old_sources() 10 0.09191 0.09553 0.1 2.81% amrex::Copy() 193 0.07385 0.08084 0.08974 2.52% FabArray::setVal() 143 0.06431 0.07638 0.08912 2.50% Castro::initialize_advance() 10 0.06825 0.07778 0.08722 2.45% Castro::do_new_sources() 10 0.05895 0.06924 0.08008 2.25% Castro::computeInitialDt() 2 0.00234 0.03869 0.07631 2.14% Castro::computeTemp() 63 0.06168 0.06686 0.0703 1.97% FabArray::ParallelCopy_finish() 41 0.03772 0.05448 0.06507 1.83% Castro::reset_internal_energy(MultiFab) 63 0.04467 0.04753 0.04974 1.40% Castro::reset_internal_energy(Fab) 1008 0.04431 0.04723 0.04945 1.39% FabArray::ParallelCopy_nowait() 41 0.04053 0.04274 0.04465 1.25% Castro::normalize_species() 62 0.04099 0.0421 0.04312 1.21% StateDataPhysBCFunct::() 41 0.03048 0.0335 0.03892 1.09% StateData::FillBoundary(geom) 41 0.03038 0.0334 0.03881 1.09% Castro::construct_new_source() 50 0.0283 0.0327 0.03728 1.05% Castro::finalize_do_advance() 10 0.01267 0.02327 0.03364 0.94% Gravity::interpolate_monopole_grav() 21 0.0273 0.02947 0.03105 0.87% Castro::construct_new_gravity_source() 10 0.02235 0.02643 0.03092 0.87% Castro::post_init() 1 0.02565 0.02594 0.02618 0.73% Amr::writePlotFile() 2 0.02454 0.02475 0.02506 0.70% Castro::post_timestep() 10 0.01476 0.0157 0.01633 0.46% VisMF::Write(FabArray) 2 0.01208 0.0127 0.01536 0.43% Castro::apply_source_to_state() 20 0.01281 0.01388 0.01505 0.42% FabArray::Saxpy() 20 0.01276 0.01383 0.01502 0.42% Castro::check_for_nan() 20 0.01066 0.01174 0.01317 0.37% MultiFab::contains_nan() 20 0.01063 0.01172 0.01314 0.37% Castro::Castro() 1 0.01046 0.01082 0.01176 0.33% FabArray::setDomainBndry() 41 0.008038 0.01004 0.01095 0.31% Castro::construct_old_source() 50 0.009978 0.01044 0.01089 0.31% Castro::construct_old_gravity_source() 10 0.009913 0.01037 0.01081 0.30% Castro::computeNewDt() 9 0.009621 0.009626 0.009631 0.27% Castro::initMFs() 1 0.006363 0.006752 0.008028 0.23% Castro::enforce_min_density() 62 0.007346 0.00755 0.007769 0.22% AmrLevel::AmrLevel(dm) 1 0.005269 0.005514 0.005951 0.17% StateData::define() 4 0.005257 0.005494 0.005937 0.17% Castro::swap_state_time_levels() 10 0.003323 0.00448 0.005093 0.14% Castro::finalize_advance() 10 0.002972 0.003724 0.004491 0.13% Castro::buildMetrics() 1 0.001622 0.001691 0.001882 0.05% Castro::post_regrid() 1 0.001534 0.00163 0.00183 0.05% Amr::InitAmr() 1 0.0002721 0.0003003 0.0003946 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.2e-05 9.844e-05 0.0001173 0.00% DistributionMapping::LeastUsedCPUs() 1 7.608e-06 9.29e-05 0.0001111 0.00% FabArrayBase::getCPC() 41 6.637e-05 7.719e-05 9.371e-05 0.00% Castro::enforce_consistent_e() 1 7.884e-05 8.735e-05 9.308e-05 0.00% Amr::writeSmallPlotFile() 1 2.871e-05 5.109e-05 6.971e-05 0.00% FabArrayBase::CPC::define() 2 2.134e-05 2.736e-05 3.377e-05 0.00% Castro::enforce_speed_limit() 62 2.627e-05 2.786e-05 3.188e-05 0.00% Gravity::set_mass_offset() 10 9.078e-06 1.109e-05 1.394e-05 0.00% Castro::retry_advance_ctu() 10 6.199e-06 9.263e-06 1.348e-05 0.00% Gravity::swapTimeLevels() 10 7.015e-06 9.691e-06 1.175e-05 0.00% Amr::initSubcycle() 1 9.654e-06 1.018e-05 1.13e-05 0.00% Castro::create_source_corrector() 10 8.417e-06 9.615e-06 1.125e-05 0.00% Castro::FluxRegCrseInit 10 6.37e-06 7.746e-06 8.89e-06 0.00% Castro::FluxRegFineAdd() 10 2.269e-06 2.489e-06 2.955e-06 0.00% DistributionMapping::Distribute() 1 8.41e-07 9.217e-07 1.026e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 32 B 37 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.11-14-g175b99d913dc) finalized