Initializing AMReX (23.11-17-g9e35dc19489d)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.11-17-g9e35dc19489d) initialized Starting run at 06:21:00 UTC on 2023-11-22. Successfully read inputs file ... Castro git describe: 23.11-6-gb720d68fa AMReX git describe: 23.11-17-g9e35dc194 Microphysics git describe: 23.11-9-ge9e31f40 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.017240827 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.38290815 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.386148011 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.389194453 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.395873151 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.427632299 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.39974659 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.396487626 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.398344235 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.396673174 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.423203414 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.016264354 seconds Ending run at 06:21:04 UTC on 2023-11-22. Run time = 4.231907663 Run time without initialization = 4.021024409 Average number of zones advanced per microsecond: 0.652 Average number of zones advanced per microsecond per rank: 0.081 TinyProfiler total time across processes [min...avg...max]: 4.231 ... 4.232 ... 4.232 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.5330 2.7451 2.9609 69.96% check_for_negative_density() 10 0.01473 0.2363 0.461 10.89% Gravity::make_radial_gravity() 21 0.2949 0.3116 0.3357 7.93% Castro::initData() 1 0.04723 0.09049 0.1382 3.27% Castro::estTimeStep() 21 0.03858 0.0832 0.1346 3.18% amrex::Copy() 193 0.09355 0.1067 0.118 2.79% FabArray::setVal() 143 0.07935 0.08823 0.09583 2.26% FabArray::ParallelCopy_finish() 41 0.04303 0.05737 0.06359 1.50% FabArray::ParallelCopy_nowait() 41 0.05671 0.05898 0.06109 1.44% FillPatchIterator::Initialize 41 0.04491 0.05022 0.05795 1.37% Castro::reset_internal_energy(Fab) 1008 0.04884 0.05202 0.05401 1.28% StateData::FillBoundary(geom) 41 0.03289 0.03879 0.04487 1.06% Castro::normalize_species() 62 0.04176 0.04292 0.04409 1.04% Castro::construct_new_gravity_source() 10 0.02639 0.03011 0.03391 0.80% Gravity::interpolate_monopole_grav() 21 0.02802 0.02935 0.03041 0.72% Castro::initialize_do_advance() 10 0.02246 0.02515 0.02832 0.67% Castro::computeTemp() 63 0.02026 0.02139 0.02251 0.53% FabArray::Saxpy() 20 0.01707 0.018 0.01924 0.45% Amr::writePlotFile() 2 0.01256 0.0172 0.01898 0.45% VisMF::Write(FabArray) 2 0.01203 0.01342 0.01834 0.43% FabArray::setDomainBndry() 41 0.01441 0.016 0.01721 0.41% MultiFab::contains_nan() 20 0.01235 0.01432 0.01666 0.39% Castro::construct_old_gravity_source() 10 0.01416 0.01473 0.01534 0.36% Castro::initialize_advance() 10 0.006245 0.01272 0.01497 0.35% Castro::initMFs() 1 0.00626 0.00742 0.009858 0.23% Castro::construct_new_source() 50 0.007191 0.00779 0.008424 0.20% StateData::define() 4 0.005154 0.006026 0.007915 0.19% main() 1 0.006699 0.007431 0.007815 0.18% Castro::enforce_min_density() 62 0.006637 0.006912 0.007312 0.17% Gravity::get_new_grav_vector() 11 0.003946 0.004953 0.006028 0.14% Castro::swap_state_time_levels() 10 0.003488 0.004247 0.004427 0.10% Amr::coarseTimeStep() 10 0.001059 0.002204 0.003581 0.08% Gravity::get_old_grav_vector() 10 0.002601 0.002869 0.003539 0.08% Castro::buildMetrics() 1 0.001455 0.001738 0.00227 0.05% Castro::finalize_do_advance() 10 0.00107 0.001496 0.001883 0.04% AmrLevel::FillPatch() 41 0.0008464 0.001112 0.001436 0.03% Amr::InitAmr() 1 0.0002565 0.0003482 0.000514 0.01% Amr::timeStep() 10 0.0001448 0.0002164 0.0003573 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002983 0.0003231 0.0003408 0.01% DistributionMapping::LeastUsedCPUs() 1 6.79e-06 0.0002018 0.0003003 0.01% Castro::clean_state() 62 0.0001624 0.0001845 0.0002092 0.00% Castro::do_advance_ctu() 10 0.0001513 0.0001694 0.0001995 0.00% StateDataPhysBCFunct::() 41 0.000114 0.0001331 0.0001748 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001217 0.0001455 0.0001648 0.00% Castro::finalize_advance() 10 8.247e-05 0.0001201 0.0001532 0.00% Castro::do_old_sources() 10 8.585e-05 0.0001194 0.0001488 0.00% Castro::construct_old_source() 50 7.683e-05 0.0001013 0.0001332 0.00% FabArray::ParallelCopy() 41 7.63e-05 9.81e-05 0.0001218 0.00% Castro::advance() 10 4.227e-05 5.918e-05 9.387e-05 0.00% Castro::enforce_consistent_e() 1 7.709e-05 8.614e-05 9.232e-05 0.00% FillPatchSingleLevel 41 6.967e-05 8.098e-05 8.905e-05 0.00% Castro::do_new_sources() 10 5.921e-05 7.56e-05 8.592e-05 0.00% Castro::subcycle_advance_ctu() 10 4.327e-05 6.521e-05 8.563e-05 0.00% Castro::Castro() 1 5.69e-05 6.822e-05 7.997e-05 0.00% FabArrayBase::getCPC() 41 4.5e-05 6.212e-05 7.802e-05 0.00% Amr::FinalizeInit() 1 3.623e-06 1.324e-05 7.548e-05 0.00% Castro::apply_source_to_state() 20 5.286e-05 6.169e-05 7.07e-05 0.00% Amr::writeSmallPlotFile() 1 3.49e-05 5.138e-05 6.932e-05 0.00% Castro::construct_old_gravity() 10 3.091e-05 4.191e-05 5.416e-05 0.00% Castro::expand_state() 10 2.614e-05 3.923e-05 5.145e-05 0.00% Castro::enforce_speed_limit() 62 2.627e-05 3.413e-05 4.483e-05 0.00% Castro::construct_new_gravity() 10 3.138e-05 3.609e-05 4.447e-05 0.00% Amr::defBaseLevel() 1 2.483e-05 2.993e-05 3.926e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.85e-05 2.321e-05 3.346e-05 0.00% FabArrayBase::CPC::define() 2 2.158e-05 2.466e-05 3.127e-05 0.00% Castro::check_for_nan() 20 2.582e-05 2.832e-05 3.069e-05 0.00% Castro::post_timestep() 10 1.311e-05 1.683e-05 2.812e-05 0.00% Castro::post_init() 1 1.476e-05 1.688e-05 2.152e-05 0.00% Amr::initSubcycle() 1 1.008e-05 1.277e-05 1.872e-05 0.00% Gravity::swapTimeLevels() 10 9.679e-06 1.33e-05 1.741e-05 0.00% Gravity::set_mass_offset() 10 9.07e-06 1.126e-05 1.508e-05 0.00% Castro::create_source_corrector() 10 1.011e-05 1.246e-05 1.441e-05 0.00% Castro::FluxRegCrseInit 10 7.87e-06 9.395e-06 1.322e-05 0.00% Castro::computeNewDt() 9 7.278e-06 8.689e-06 1.043e-05 0.00% Castro::retry_advance_ctu() 10 6.866e-06 7.784e-06 8.934e-06 0.00% Castro::post_regrid() 1 1.572e-06 3.404e-06 7.881e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.169e-06 4.974e-06 5.831e-06 0.00% Amr::InitializeInit() 1 1.821e-06 2.409e-06 5.41e-06 0.00% Castro::computeInitialDt() 2 3.323e-06 4.345e-06 5.35e-06 0.00% Castro::FluxRegFineAdd() 10 1.908e-06 2.628e-06 3.128e-06 0.00% Amr::init() 1 1.9e-06 2.099e-06 2.229e-06 0.00% Amr::initialInit() 1 1.211e-06 1.646e-06 1.964e-06 0.00% DistributionMapping::Distribute() 1 8.22e-07 1.065e-06 1.344e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 4.231 4.232 4.232 100.00% Amr::coarseTimeStep() 10 3.997 3.997 3.997 94.45% Amr::timeStep() 10 3.983 3.984 3.985 94.17% Castro::advance() 10 3.967 3.968 3.969 93.79% Castro::subcycle_advance_ctu() 10 3.872 3.877 3.899 92.13% Castro::do_advance_ctu() 10 3.872 3.877 3.899 92.12% Castro::construct_ctu_hydro_source() 10 2.999 3.004 3.015 71.24% check_for_negative_density() 10 0.01473 0.2363 0.461 10.89% Gravity::make_radial_gravity() 21 0.317 0.3348 0.3602 8.51% AmrLevel::FillPatch() 41 0.2277 0.2655 0.2799 6.61% Castro::initialize_do_advance() 10 0.1949 0.2192 0.2394 5.66% FillPatchIterator::Initialize 41 0.1925 0.2219 0.233 5.51% Gravity::get_new_grav_vector() 11 0.2278 0.2298 0.2318 5.48% Castro::construct_old_gravity() 10 0.1884 0.2035 0.2231 5.27% Gravity::get_old_grav_vector() 10 0.1876 0.2027 0.2224 5.26% Amr::init() 1 0.2102 0.2104 0.2105 4.97% Castro::construct_new_gravity() 10 0.2033 0.2047 0.206 4.87% Amr::initialInit() 1 0.1926 0.1928 0.1931 4.56% Castro::expand_state() 10 0.1231 0.1499 0.1636 3.87% Amr::InitializeInit() 1 0.06709 0.1117 0.1636 3.87% Amr::defBaseLevel() 1 0.06709 0.1117 0.1636 3.87% FillPatchIterator::FillFromLevel0() 41 0.1332 0.1557 0.1633 3.86% FillPatchSingleLevel 41 0.133 0.1555 0.1631 3.85% Castro::initData() 1 0.05071 0.09422 0.1417 3.35% Castro::estTimeStep() 21 0.03858 0.0832 0.1346 3.18% Castro::do_old_sources() 10 0.1216 0.1286 0.131 3.09% Castro::clean_state() 62 0.1179 0.1229 0.1265 2.99% Amr::FinalizeInit() 1 0.02893 0.08114 0.1257 2.97% FabArray::ParallelCopy() 41 0.09994 0.1165 0.1221 2.89% amrex::Copy() 193 0.09355 0.1067 0.118 2.79% Castro::computeInitialDt() 2 0.002278 0.0544 0.09908 2.34% FabArray::setVal() 143 0.07935 0.08823 0.09583 2.26% Castro::initialize_advance() 10 0.06534 0.08665 0.09125 2.16% Castro::do_new_sources() 10 0.06852 0.07615 0.08374 1.98% Castro::computeTemp() 63 0.0694 0.07373 0.07685 1.82% FabArray::ParallelCopy_finish() 41 0.04303 0.05737 0.06359 1.50% FabArray::ParallelCopy_nowait() 41 0.0568 0.05907 0.06116 1.45% Castro::reset_internal_energy(MultiFab) 63 0.04914 0.05234 0.05435 1.28% Castro::reset_internal_energy(Fab) 1008 0.04884 0.05202 0.05401 1.28% StateDataPhysBCFunct::() 41 0.03303 0.03892 0.04499 1.06% StateData::FillBoundary(geom) 41 0.03289 0.03879 0.04487 1.06% Castro::normalize_species() 62 0.04176 0.04292 0.04409 1.04% Castro::construct_new_source() 50 0.03367 0.0379 0.04202 0.99% Amr::writePlotFile() 2 0.03357 0.03391 0.03417 0.81% Castro::construct_new_gravity_source() 10 0.02639 0.03011 0.03391 0.80% Castro::finalize_do_advance() 10 0.01253 0.02107 0.0313 0.74% Gravity::interpolate_monopole_grav() 21 0.02802 0.02935 0.03041 0.72% Castro::post_init() 1 0.02602 0.02637 0.02666 0.63% Castro::apply_source_to_state() 20 0.01713 0.01806 0.01931 0.46% FabArray::Saxpy() 20 0.01707 0.018 0.01924 0.45% VisMF::Write(FabArray) 2 0.01203 0.01342 0.01834 0.43% FabArray::setDomainBndry() 41 0.01441 0.016 0.01721 0.41% Castro::check_for_nan() 20 0.01237 0.01435 0.01669 0.39% MultiFab::contains_nan() 20 0.01235 0.01432 0.01666 0.39% Castro::post_timestep() 10 0.01538 0.01578 0.01623 0.38% Castro::construct_old_source() 50 0.01425 0.01483 0.01544 0.36% Castro::construct_old_gravity_source() 10 0.01416 0.01473 0.01534 0.36% Castro::Castro() 1 0.009708 0.01118 0.01396 0.33% Castro::initMFs() 1 0.00626 0.00742 0.009858 0.23% Castro::computeNewDt() 9 0.009222 0.009233 0.009241 0.22% AmrLevel::AmrLevel(dm) 1 0.005172 0.006049 0.007943 0.19% StateData::define() 4 0.005154 0.006026 0.007915 0.19% Castro::enforce_min_density() 62 0.006637 0.006912 0.007312 0.17% Castro::finalize_advance() 10 0.003867 0.004488 0.005087 0.12% Castro::swap_state_time_levels() 10 0.003488 0.004247 0.004427 0.10% Castro::buildMetrics() 1 0.001572 0.001885 0.002486 0.06% Castro::post_regrid() 1 0.001453 0.001619 0.001997 0.05% Amr::InitAmr() 1 0.0002671 0.000361 0.0005327 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.23e-05 0.0002078 0.0003068 0.01% DistributionMapping::LeastUsedCPUs() 1 6.79e-06 0.0002018 0.0003003 0.01% FabArrayBase::getCPC() 41 6.679e-05 8.678e-05 0.0001064 0.00% Castro::enforce_consistent_e() 1 7.709e-05 8.614e-05 9.232e-05 0.00% Amr::writeSmallPlotFile() 1 3.49e-05 5.138e-05 6.932e-05 0.00% Castro::enforce_speed_limit() 62 2.627e-05 3.413e-05 4.483e-05 0.00% FabArrayBase::CPC::define() 2 2.158e-05 2.466e-05 3.127e-05 0.00% Amr::initSubcycle() 1 1.008e-05 1.277e-05 1.872e-05 0.00% Gravity::swapTimeLevels() 10 9.679e-06 1.33e-05 1.741e-05 0.00% Gravity::set_mass_offset() 10 9.07e-06 1.126e-05 1.508e-05 0.00% Castro::create_source_corrector() 10 1.011e-05 1.246e-05 1.441e-05 0.00% Castro::FluxRegCrseInit 10 7.87e-06 9.395e-06 1.322e-05 0.00% Castro::retry_advance_ctu() 10 6.866e-06 7.784e-06 8.934e-06 0.00% Castro::FluxRegFineAdd() 10 1.908e-06 2.628e-06 3.128e-06 0.00% DistributionMapping::Distribute() 1 8.22e-07 1.065e-06 1.344e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 25 B 30 B 44 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.11-17-g9e35dc19489d) finalized