Initializing AMReX (23.11-17-g9e35dc19489d)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.11-17-g9e35dc19489d) initialized Starting run at 06:20:37 UTC on 2023-11-24. Successfully read inputs file ... Castro git describe: 23.11-7-gbc5fe8d25 AMReX git describe: 23.11-17-g9e35dc194 Microphysics git describe: 23.11-11-g5ab809ab reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.0149519 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.357825592 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.332496886 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.356602457 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.327949351 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.354792166 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.327835126 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.30726295 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.307177511 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.308321055 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.309571562 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009669293 seconds Ending run at 06:20:41 UTC on 2023-11-24. Run time = 3.561110192 Run time without initialization = 3.30483018 Average number of zones advanced per microsecond: 0.793 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.56 ... 3.561 ... 3.561 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2936 2.3465 2.4056 67.55% Gravity::make_radial_gravity() 21 0.3019 0.309 0.3226 9.06% Castro::initData() 1 0.04731 0.1009 0.1732 4.86% Castro::estTimeStep() 21 0.03606 0.1099 0.1714 4.81% check_for_negative_density() 10 0.03624 0.09739 0.1524 4.28% FabArray::ParallelCopy_finish() 41 0.03229 0.05102 0.08881 2.49% amrex::Copy() 193 0.0618 0.07398 0.08067 2.27% FabArray::setVal() 143 0.05916 0.06778 0.07796 2.19% Castro::reset_internal_energy(Fab) 1008 0.0438 0.0476 0.05062 1.42% Castro::normalize_species() 62 0.04081 0.04161 0.04261 1.20% FabArray::ParallelCopy_nowait() 41 0.03386 0.03979 0.0415 1.17% FillPatchIterator::Initialize 41 0.0267 0.03112 0.03351 0.94% StateData::FillBoundary(geom) 41 0.02788 0.03093 0.03309 0.93% Gravity::interpolate_monopole_grav() 21 0.0278 0.0292 0.02973 0.83% Castro::construct_new_gravity_source() 10 0.02282 0.02461 0.02795 0.78% Castro::computeTemp() 63 0.01701 0.01907 0.02055 0.58% Castro::initialize_do_advance() 10 0.01157 0.01665 0.01988 0.56% VisMF::Write(FabArray) 2 0.01163 0.01257 0.01544 0.43% Castro::initialize_advance() 10 0.004045 0.01008 0.01389 0.39% FabArray::Saxpy() 20 0.0106 0.01227 0.01306 0.37% Amr::writePlotFile() 2 0.006949 0.009868 0.0122 0.34% FabArray::setDomainBndry() 41 0.008505 0.01024 0.01203 0.34% MultiFab::contains_nan() 20 0.009464 0.01048 0.01132 0.32% Castro::initMFs() 1 0.006455 0.007682 0.01028 0.29% Castro::construct_old_gravity_source() 10 0.007109 0.009418 0.009966 0.28% StateData::define() 4 0.00526 0.006143 0.008009 0.22% Castro::construct_new_source() 50 0.005423 0.00605 0.006383 0.18% Castro::enforce_min_density() 62 0.005551 0.005971 0.006247 0.18% Gravity::get_new_grav_vector() 11 0.00294 0.003692 0.005744 0.16% main() 1 0.003757 0.00426 0.004704 0.13% Castro::swap_state_time_levels() 10 0.003036 0.004073 0.004375 0.12% Amr::coarseTimeStep() 10 0.001371 0.002287 0.003101 0.09% Castro::buildMetrics() 1 0.001529 0.00178 0.002364 0.07% Gravity::get_old_grav_vector() 10 0.001602 0.001848 0.00217 0.06% Castro::finalize_do_advance() 10 0.0003959 0.001214 0.001634 0.05% AmrLevel::FillPatch() 41 0.0006225 0.0009646 0.00126 0.04% Amr::InitAmr() 1 0.0002637 0.0003485 0.0005008 0.01% Amr::timeStep() 10 0.0001329 0.0002241 0.0004203 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002731 0.0002903 0.0003166 0.01% DistributionMapping::LeastUsedCPUs() 1 6.779e-06 0.0001768 0.0002606 0.01% Castro::do_advance_ctu() 10 0.0001195 0.0001417 0.0001683 0.00% Castro::clean_state() 62 0.0001265 0.0001443 0.0001645 0.00% Castro::enforce_consistent_e() 1 7.91e-05 0.0001067 0.0001629 0.00% FillPatchIterator::FillFromLevel0() 41 9.898e-05 0.0001129 0.0001398 0.00% StateDataPhysBCFunct::() 41 8.774e-05 0.0001025 0.0001156 0.00% Castro::finalize_advance() 10 7.267e-05 8.607e-05 0.0001128 0.00% Castro::do_old_sources() 10 6.723e-05 8.784e-05 0.0001087 0.00% FabArray::ParallelCopy() 41 7.473e-05 8.02e-05 8.662e-05 0.00% Castro::construct_old_source() 50 4.782e-05 6.731e-05 8.441e-05 0.00% Castro::Castro() 1 5.624e-05 7.004e-05 8.331e-05 0.00% Amr::FinalizeInit() 1 4.638e-06 1.426e-05 7.405e-05 0.00% FillPatchSingleLevel 41 5.547e-05 6.302e-05 6.872e-05 0.00% Castro::subcycle_advance_ctu() 10 3.942e-05 5.035e-05 6.807e-05 0.00% Castro::advance() 10 3.591e-05 4.354e-05 6.67e-05 0.00% Castro::do_new_sources() 10 5.178e-05 6.104e-05 6.531e-05 0.00% FabArrayBase::getCPC() 41 3.876e-05 4.52e-05 6.162e-05 0.00% Amr::writeSmallPlotFile() 1 2.959e-05 4.15e-05 5.626e-05 0.00% Castro::apply_source_to_state() 20 3.301e-05 4.632e-05 5.574e-05 0.00% Amr::defBaseLevel() 1 2.932e-05 3.645e-05 5.092e-05 0.00% Castro::construct_old_gravity() 10 3.207e-05 3.607e-05 3.963e-05 0.00% Castro::construct_new_gravity() 10 3.206e-05 3.54e-05 3.912e-05 0.00% Castro::expand_state() 10 1.662e-05 2.48e-05 3.733e-05 0.00% Castro::enforce_speed_limit() 62 2.347e-05 2.766e-05 3.282e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.206e-05 2.187e-05 3.28e-05 0.00% FabArrayBase::CPC::define() 2 1.981e-05 2.473e-05 3.187e-05 0.00% Castro::check_for_nan() 20 2.29e-05 2.728e-05 3.078e-05 0.00% Castro::post_init() 1 1.242e-05 1.581e-05 2.094e-05 0.00% Amr::initSubcycle() 1 1.04e-05 1.3e-05 1.92e-05 0.00% Castro::post_timestep() 10 1.107e-05 1.463e-05 1.641e-05 0.00% Gravity::set_mass_offset() 10 7.626e-06 1.1e-05 1.387e-05 0.00% Castro::create_source_corrector() 10 6.875e-06 8.967e-06 1.163e-05 0.00% Gravity::swapTimeLevels() 10 5.155e-06 9.21e-06 1.057e-05 0.00% Castro::computeNewDt() 9 7.373e-06 7.948e-06 8.394e-06 0.00% Castro::FluxRegCrseInit 10 5.381e-06 6.95e-06 8.327e-06 0.00% Castro::retry_advance_ctu() 10 5.989e-06 6.866e-06 7.666e-06 0.00% Castro::post_regrid() 1 2.908e-06 4.031e-06 7.301e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.088e-06 5.437e-06 6.944e-06 0.00% Castro::computeInitialDt() 2 3.4e-06 4.136e-06 5.37e-06 0.00% Amr::InitializeInit() 1 1.806e-06 2.625e-06 5.085e-06 0.00% Castro::FluxRegFineAdd() 10 1.808e-06 2.147e-06 2.723e-06 0.00% Amr::init() 1 1.917e-06 2.181e-06 2.571e-06 0.00% Amr::initialInit() 1 1.276e-06 1.76e-06 2.112e-06 0.00% DistributionMapping::Distribute() 1 9.23e-07 1.225e-06 2.055e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.56 3.561 3.561 100.00% Amr::coarseTimeStep() 10 3.291 3.291 3.291 92.40% Amr::timeStep() 10 3.277 3.278 3.279 92.07% Castro::advance() 10 3.262 3.262 3.263 91.62% Castro::subcycle_advance_ctu() 10 3.182 3.19 3.203 89.93% Castro::do_advance_ctu() 10 3.182 3.19 3.203 89.93% Castro::construct_ctu_hydro_source() 10 2.462 2.465 2.468 69.31% Gravity::make_radial_gravity() 21 0.3167 0.3237 0.3357 9.43% Amr::init() 1 0.2556 0.2558 0.2559 7.19% Amr::initialInit() 1 0.2399 0.2405 0.2409 6.77% Gravity::get_new_grav_vector() 11 0.2193 0.2214 0.2239 6.29% AmrLevel::FillPatch() 41 0.176 0.1935 0.2094 5.88% Amr::InitializeInit() 1 0.06678 0.1231 0.2011 5.65% Amr::defBaseLevel() 1 0.06678 0.1231 0.2011 5.65% Castro::construct_old_gravity() 10 0.1775 0.1836 0.1933 5.43% Gravity::get_old_grav_vector() 10 0.1769 0.1831 0.1928 5.41% Castro::construct_new_gravity() 10 0.1856 0.1869 0.1889 5.30% FillPatchIterator::Initialize 41 0.1456 0.1635 0.1861 5.23% Castro::initData() 1 0.05117 0.1051 0.1784 5.01% Amr::FinalizeInit() 1 0.03949 0.1174 0.1732 4.86% Castro::estTimeStep() 21 0.03606 0.1099 0.1714 4.81% Castro::initialize_do_advance() 10 0.155 0.1636 0.1699 4.77% check_for_negative_density() 10 0.03624 0.09739 0.1524 4.28% FillPatchIterator::FillFromLevel0() 41 0.103 0.1222 0.1509 4.24% FillPatchSingleLevel 41 0.1029 0.122 0.1508 4.24% Castro::computeInitialDt() 2 0.00294 0.0811 0.1375 3.86% FabArray::ParallelCopy() 41 0.07168 0.09095 0.1228 3.45% Castro::expand_state() 10 0.09803 0.111 0.1208 3.39% Castro::clean_state() 62 0.1072 0.1136 0.1184 3.32% Castro::do_old_sources() 10 0.08556 0.09039 0.09344 2.62% FabArray::ParallelCopy_finish() 41 0.03229 0.05102 0.08881 2.49% amrex::Copy() 193 0.0618 0.07398 0.08067 2.27% FabArray::setVal() 143 0.05916 0.06778 0.07796 2.19% Castro::initialize_advance() 10 0.0553 0.06891 0.0772 2.17% Castro::do_new_sources() 10 0.05727 0.06429 0.07318 2.05% Castro::computeTemp() 63 0.06109 0.06696 0.07136 2.00% Castro::reset_internal_energy(MultiFab) 63 0.04408 0.04789 0.05093 1.43% Castro::reset_internal_energy(Fab) 1008 0.0438 0.0476 0.05062 1.42% Castro::normalize_species() 62 0.04081 0.04161 0.04261 1.20% FabArray::ParallelCopy_nowait() 41 0.03392 0.03986 0.04156 1.17% Castro::post_init() 1 0.03491 0.03556 0.03626 1.02% Castro::construct_new_source() 50 0.02854 0.03066 0.03431 0.96% StateDataPhysBCFunct::() 41 0.02797 0.03103 0.03319 0.93% StateData::FillBoundary(geom) 41 0.02788 0.03093 0.03309 0.93% Gravity::interpolate_monopole_grav() 21 0.0278 0.0292 0.02973 0.83% Castro::finalize_do_advance() 10 0.0119 0.02091 0.02901 0.81% Castro::construct_new_gravity_source() 10 0.02282 0.02461 0.02795 0.78% Amr::writePlotFile() 2 0.02443 0.02504 0.02573 0.72% Castro::post_timestep() 10 0.01494 0.01545 0.01645 0.46% VisMF::Write(FabArray) 2 0.01163 0.01257 0.01544 0.43% Castro::Castro() 1 0.01003 0.01156 0.01453 0.41% Castro::apply_source_to_state() 20 0.01063 0.01231 0.01311 0.37% FabArray::Saxpy() 20 0.0106 0.01227 0.01306 0.37% FabArray::setDomainBndry() 41 0.008505 0.01024 0.01203 0.34% Castro::check_for_nan() 20 0.00949 0.01051 0.01135 0.32% MultiFab::contains_nan() 20 0.009464 0.01048 0.01132 0.32% Castro::initMFs() 1 0.006455 0.007682 0.01028 0.29% Castro::construct_old_source() 50 0.007157 0.009485 0.01005 0.28% Castro::construct_old_gravity_source() 10 0.007109 0.009418 0.009966 0.28% Castro::computeNewDt() 9 0.009127 0.009136 0.009142 0.26% AmrLevel::AmrLevel(dm) 1 0.005282 0.006165 0.008041 0.23% StateData::define() 4 0.00526 0.006143 0.008009 0.22% Castro::enforce_min_density() 62 0.005551 0.005971 0.006247 0.18% Castro::swap_state_time_levels() 10 0.003036 0.004073 0.004375 0.12% Castro::finalize_advance() 10 0.002937 0.0034 0.003852 0.11% Castro::post_regrid() 1 0.00149 0.00199 0.002759 0.08% Castro::buildMetrics() 1 0.001648 0.001931 0.002576 0.07% Amr::InitAmr() 1 0.0002742 0.0003615 0.00052 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.241e-05 0.0001834 0.0002682 0.01% DistributionMapping::LeastUsedCPUs() 1 6.779e-06 0.0001768 0.0002606 0.01% Castro::enforce_consistent_e() 1 7.91e-05 0.0001067 0.0001629 0.00% FabArrayBase::getCPC() 41 6.206e-05 6.993e-05 8.793e-05 0.00% Amr::writeSmallPlotFile() 1 2.959e-05 4.15e-05 5.626e-05 0.00% Castro::enforce_speed_limit() 62 2.347e-05 2.766e-05 3.282e-05 0.00% FabArrayBase::CPC::define() 2 1.981e-05 2.473e-05 3.187e-05 0.00% Amr::initSubcycle() 1 1.04e-05 1.3e-05 1.92e-05 0.00% Gravity::set_mass_offset() 10 7.626e-06 1.1e-05 1.387e-05 0.00% Castro::create_source_corrector() 10 6.875e-06 8.967e-06 1.163e-05 0.00% Gravity::swapTimeLevels() 10 5.155e-06 9.21e-06 1.057e-05 0.00% Castro::FluxRegCrseInit 10 5.381e-06 6.95e-06 8.327e-06 0.00% Castro::retry_advance_ctu() 10 5.989e-06 6.866e-06 7.666e-06 0.00% Castro::FluxRegFineAdd() 10 1.808e-06 2.147e-06 2.723e-06 0.00% DistributionMapping::Distribute() 1 9.23e-07 1.225e-06 2.055e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 36 B 44 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.11-17-g9e35dc19489d) finalized