Initializing AMReX (23.11-17-g9e35dc19489d)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.11-17-g9e35dc19489d) initialized Starting run at 06:20:22 UTC on 2023-11-27. Successfully read inputs file ... Castro git describe: 23.11-7-gbc5fe8d25 AMReX git describe: 23.11-17-g9e35dc194 Microphysics git describe: 23.11-12-g965a061a reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01428263 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.360280273 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.33743429 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.374214989 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.333115253 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.351980454 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.352625085 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.309433343 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.311116493 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.309045408 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.311599424 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009938699 seconds Ending run at 06:20:26 UTC on 2023-11-27. Run time = 3.552331152 Run time without initialization = 3.36632011 Average number of zones advanced per microsecond: 0.779 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.551 ... 3.552 ... 3.552 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3019 2.3560 2.4351 68.55% Gravity::make_radial_gravity() 21 0.2856 0.2949 0.3063 8.62% check_for_negative_density() 10 0.01149 0.09557 0.1527 4.30% Castro::initData() 1 0.04768 0.08616 0.1225 3.45% Castro::estTimeStep() 21 0.02862 0.07193 0.1028 2.89% amrex::Copy() 193 0.07935 0.08304 0.08988 2.53% FabArray::setVal() 143 0.06576 0.07587 0.08821 2.48% FabArray::ParallelCopy_finish() 41 0.04258 0.06464 0.07698 2.17% Castro::reset_internal_energy(Fab) 1008 0.04545 0.0483 0.05244 1.48% Castro::normalize_species() 62 0.04097 0.04269 0.04521 1.27% FabArray::ParallelCopy_nowait() 41 0.03957 0.04208 0.04382 1.23% FillPatchIterator::Initialize 41 0.02751 0.03466 0.04011 1.13% StateData::FillBoundary(geom) 41 0.02897 0.0328 0.0375 1.06% Gravity::interpolate_monopole_grav() 21 0.02765 0.02927 0.03003 0.85% Castro::construct_new_gravity_source() 10 0.02304 0.02599 0.02971 0.84% Castro::initialize_do_advance() 10 0.01738 0.01991 0.0239 0.67% Castro::computeTemp() 63 0.0177 0.01954 0.02106 0.59% FabArray::Saxpy() 20 0.01221 0.01443 0.0207 0.58% VisMF::Write(FabArray) 2 0.01213 0.01274 0.01508 0.42% Castro::initialize_advance() 10 0.009765 0.01212 0.0148 0.42% FabArray::setDomainBndry() 41 0.007089 0.01068 0.01275 0.36% MultiFab::contains_nan() 20 0.01015 0.01099 0.01181 0.33% Castro::construct_old_gravity_source() 10 0.009324 0.01027 0.01112 0.31% Castro::construct_new_source() 50 0.006276 0.006936 0.01067 0.30% Amr::writePlotFile() 2 0.006369 0.008664 0.009273 0.26% Castro::initMFs() 1 0.006118 0.006614 0.007716 0.22% Castro::enforce_min_density() 62 0.005822 0.006139 0.006515 0.18% StateData::define() 4 0.00514 0.005366 0.005845 0.16% main() 1 0.003098 0.004391 0.004877 0.14% Amr::coarseTimeStep() 10 0.001281 0.002873 0.004568 0.13% Castro::swap_state_time_levels() 10 0.003308 0.004354 0.004525 0.13% Gravity::get_new_grav_vector() 11 0.002877 0.003539 0.004098 0.12% Gravity::get_old_grav_vector() 10 0.001558 0.001996 0.002317 0.07% Castro::buildMetrics() 1 0.001464 0.001531 0.001664 0.05% Castro::finalize_do_advance() 10 0.0009771 0.001159 0.001323 0.04% AmrLevel::FillPatch() 41 0.0006886 0.000918 0.001065 0.03% Amr::InitAmr() 1 0.0002865 0.0003298 0.0004633 0.01% Amr::timeStep() 10 0.0001599 0.0002208 0.0004448 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002825 0.0003044 0.0003942 0.01% DistributionMapping::LeastUsedCPUs() 1 7.112e-06 0.0001795 0.0002237 0.01% Castro::do_advance_ctu() 10 0.0001325 0.0001536 0.0001815 0.01% Castro::clean_state() 62 0.0001391 0.0001539 0.0001785 0.01% FillPatchIterator::FillFromLevel0() 41 9.945e-05 0.0001227 0.0001585 0.00% StateDataPhysBCFunct::() 41 9.479e-05 0.0001101 0.0001251 0.00% Castro::finalize_advance() 10 7.288e-05 9.263e-05 0.0001174 0.00% Castro::do_old_sources() 10 8.153e-05 9.724e-05 0.0001146 0.00% Castro::enforce_consistent_e() 1 8.021e-05 8.777e-05 0.0001067 0.00% Castro::construct_old_source() 50 6.261e-05 7.742e-05 9.685e-05 0.00% FabArray::ParallelCopy() 41 7.297e-05 8.463e-05 9.45e-05 0.00% Castro::Castro() 1 5.679e-05 7.415e-05 9.201e-05 0.00% Amr::FinalizeInit() 1 4.264e-06 1.58e-05 9.155e-05 0.00% Castro::do_new_sources() 10 5.691e-05 6.799e-05 8.556e-05 0.00% Castro::apply_source_to_state() 20 4.097e-05 5.021e-05 7.678e-05 0.00% FillPatchSingleLevel 41 6.027e-05 6.7e-05 7.547e-05 0.00% FabArrayBase::getCPC() 41 3.832e-05 5.603e-05 7.477e-05 0.00% Amr::writeSmallPlotFile() 1 3.201e-05 4.931e-05 6.836e-05 0.00% Castro::advance() 10 3.939e-05 4.6e-05 5.878e-05 0.00% Castro::subcycle_advance_ctu() 10 4.128e-05 5.023e-05 5.862e-05 0.00% Amr::defBaseLevel() 1 2.423e-05 3.221e-05 4.705e-05 0.00% Castro::construct_new_gravity() 10 2.818e-05 3.609e-05 4.416e-05 0.00% Castro::construct_old_gravity() 10 3.075e-05 3.707e-05 4.127e-05 0.00% FabArrayBase::CPC::define() 2 2.122e-05 2.536e-05 3.064e-05 0.00% Castro::expand_state() 10 2.047e-05 2.56e-05 2.962e-05 0.00% Amr::initSubcycle() 1 1.004e-05 1.334e-05 2.961e-05 0.00% Castro::enforce_speed_limit() 62 2.277e-05 2.687e-05 2.932e-05 0.00% Castro::retry_advance_ctu() 10 6.039e-06 9.745e-06 2.738e-05 0.00% Castro::check_for_nan() 20 2.176e-05 2.449e-05 2.661e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.179e-05 1.778e-05 2.38e-05 0.00% Gravity::set_mass_offset() 10 8.516e-06 1.669e-05 2.331e-05 0.00% Castro::post_timestep() 10 1.217e-05 1.472e-05 2.108e-05 0.00% Castro::post_init() 1 1.25e-05 1.482e-05 1.697e-05 0.00% Castro::FluxRegCrseInit 10 5.917e-06 8.859e-06 1.59e-05 0.00% Gravity::swapTimeLevels() 10 8.587e-06 1.059e-05 1.452e-05 0.00% Castro::create_source_corrector() 10 8.283e-06 9.45e-06 1.08e-05 0.00% Castro::computeNewDt() 9 7.333e-06 7.998e-06 8.716e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.796e-06 5.106e-06 6.727e-06 0.00% Castro::computeInitialDt() 2 3.675e-06 4.868e-06 5.809e-06 0.00% Amr::InitializeInit() 1 1.857e-06 2.939e-06 5.539e-06 0.00% Castro::post_regrid() 1 2.466e-06 3.277e-06 5.146e-06 0.00% Amr::initialInit() 1 1.428e-06 1.838e-06 2.837e-06 0.00% Castro::FluxRegFineAdd() 10 1.96e-06 2.197e-06 2.742e-06 0.00% Amr::init() 1 1.96e-06 2.282e-06 2.666e-06 0.00% DistributionMapping::Distribute() 1 8.1e-07 1.059e-06 1.323e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.551 3.552 3.552 100.00% Amr::coarseTimeStep() 10 3.352 3.352 3.352 94.35% Amr::timeStep() 10 3.337 3.338 3.34 94.02% Castro::advance() 10 3.322 3.323 3.324 93.57% Castro::subcycle_advance_ctu() 10 3.231 3.241 3.249 91.46% Castro::do_advance_ctu() 10 3.231 3.241 3.249 91.46% Castro::construct_ctu_hydro_source() 10 2.468 2.472 2.476 69.70% Gravity::make_radial_gravity() 21 0.3015 0.3119 0.3218 9.06% AmrLevel::FillPatch() 41 0.1994 0.2181 0.2349 6.61% Gravity::get_new_grav_vector() 11 0.2132 0.2144 0.2159 6.08% FillPatchIterator::Initialize 41 0.1711 0.1853 0.2002 5.64% Castro::construct_old_gravity() 10 0.1804 0.1881 0.1957 5.51% Gravity::get_old_grav_vector() 10 0.1794 0.1872 0.1945 5.48% Castro::construct_new_gravity() 10 0.1897 0.1905 0.1914 5.39% Castro::initialize_do_advance() 10 0.1693 0.1809 0.1911 5.38% Amr::init() 1 0.1854 0.1856 0.1856 5.22% Amr::initialInit() 1 0.1709 0.1712 0.1714 4.82% FillPatchIterator::FillFromLevel0() 41 0.1227 0.14 0.1543 4.34% FillPatchSingleLevel 41 0.1226 0.1399 0.1542 4.34% check_for_negative_density() 10 0.01149 0.09557 0.1527 4.30% Amr::InitializeInit() 1 0.06759 0.1063 0.1437 4.04% Amr::defBaseLevel() 1 0.06759 0.1063 0.1437 4.04% Castro::expand_state() 10 0.1093 0.1236 0.1365 3.84% Castro::initData() 1 0.05189 0.09009 0.1261 3.55% Castro::clean_state() 62 0.1101 0.1162 0.124 3.49% FabArray::ParallelCopy() 41 0.0849 0.1069 0.1203 3.39% Amr::FinalizeInit() 1 0.02753 0.06491 0.1037 2.92% Castro::estTimeStep() 21 0.02862 0.07193 0.1028 2.89% Castro::do_old_sources() 10 0.09298 0.09817 0.1007 2.83% amrex::Copy() 193 0.07935 0.08304 0.08988 2.53% FabArray::setVal() 143 0.06576 0.07587 0.08821 2.48% Castro::initialize_advance() 10 0.06952 0.07785 0.08725 2.46% Castro::do_new_sources() 10 0.0607 0.06954 0.07894 2.22% Castro::computeInitialDt() 2 0.002195 0.03959 0.07831 2.20% FabArray::ParallelCopy_finish() 41 0.04258 0.06464 0.07698 2.17% Castro::computeTemp() 63 0.06345 0.06814 0.07379 2.08% Castro::reset_internal_energy(MultiFab) 63 0.04575 0.0486 0.05273 1.48% Castro::reset_internal_energy(Fab) 1008 0.04545 0.0483 0.05244 1.48% Castro::normalize_species() 62 0.04097 0.04269 0.04521 1.27% FabArray::ParallelCopy_nowait() 41 0.03965 0.04216 0.0439 1.24% Castro::construct_new_source() 50 0.02932 0.03292 0.04038 1.14% StateDataPhysBCFunct::() 41 0.02908 0.03291 0.0376 1.06% StateData::FillBoundary(geom) 41 0.02897 0.0328 0.0375 1.06% Castro::finalize_do_advance() 10 0.01362 0.02446 0.03366 0.95% Gravity::interpolate_monopole_grav() 21 0.02765 0.02927 0.03003 0.85% Castro::construct_new_gravity_source() 10 0.02304 0.02599 0.02971 0.84% Castro::post_init() 1 0.02459 0.02482 0.02509 0.71% Amr::writePlotFile() 2 0.02416 0.0244 0.02466 0.69% Castro::apply_source_to_state() 20 0.01226 0.01448 0.02078 0.58% FabArray::Saxpy() 20 0.01221 0.01443 0.0207 0.58% Castro::post_timestep() 10 0.01491 0.01559 0.01634 0.46% VisMF::Write(FabArray) 2 0.01213 0.01274 0.01508 0.42% FabArray::setDomainBndry() 41 0.007089 0.01068 0.01275 0.36% Castro::check_for_nan() 20 0.01017 0.01101 0.01184 0.33% MultiFab::contains_nan() 20 0.01015 0.01099 0.01181 0.33% Castro::Castro() 1 0.01003 0.01057 0.01144 0.32% Castro::construct_old_source() 50 0.009387 0.01035 0.0112 0.32% Castro::construct_old_gravity_source() 10 0.009324 0.01027 0.01112 0.31% Castro::computeNewDt() 9 0.00904 0.009048 0.009054 0.25% Castro::initMFs() 1 0.006118 0.006614 0.007716 0.22% Castro::enforce_min_density() 62 0.005822 0.006139 0.006515 0.18% AmrLevel::AmrLevel(dm) 1 0.005154 0.005384 0.005864 0.17% StateData::define() 4 0.00514 0.005366 0.005845 0.16% Castro::finalize_advance() 10 0.003058 0.004154 0.005606 0.16% Castro::swap_state_time_levels() 10 0.003308 0.004354 0.004525 0.13% Castro::buildMetrics() 1 0.001581 0.001662 0.001821 0.05% Castro::post_regrid() 1 0.001525 0.001609 0.001688 0.05% Amr::InitAmr() 1 0.0002977 0.0003432 0.0004929 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.322e-05 0.0001857 0.0002313 0.01% DistributionMapping::LeastUsedCPUs() 1 7.112e-06 0.0001795 0.0002237 0.01% Castro::enforce_consistent_e() 1 8.021e-05 8.777e-05 0.0001067 0.00% FabArrayBase::getCPC() 41 6.291e-05 8.139e-05 0.0001018 0.00% Amr::writeSmallPlotFile() 1 3.201e-05 4.931e-05 6.836e-05 0.00% FabArrayBase::CPC::define() 2 2.122e-05 2.536e-05 3.064e-05 0.00% Amr::initSubcycle() 1 1.004e-05 1.334e-05 2.961e-05 0.00% Castro::enforce_speed_limit() 62 2.277e-05 2.687e-05 2.932e-05 0.00% Castro::retry_advance_ctu() 10 6.039e-06 9.745e-06 2.738e-05 0.00% Gravity::set_mass_offset() 10 8.516e-06 1.669e-05 2.331e-05 0.00% Castro::FluxRegCrseInit 10 5.917e-06 8.859e-06 1.59e-05 0.00% Gravity::swapTimeLevels() 10 8.587e-06 1.059e-05 1.452e-05 0.00% Castro::create_source_corrector() 10 8.283e-06 9.45e-06 1.08e-05 0.00% Castro::FluxRegFineAdd() 10 1.96e-06 2.197e-06 2.742e-06 0.00% DistributionMapping::Distribute() 1 8.1e-07 1.059e-06 1.323e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 31 B 38 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.11-17-g9e35dc19489d) finalized