Initializing AMReX (23.11-19-g4b64003c8009)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.11-19-g4b64003c8009) initialized Starting run at 06:26:54 UTC on 2023-11-28. Successfully read inputs file ... Castro git describe: 23.11-7-gbc5fe8d25 AMReX git describe: 23.11-19-g4b64003c8 Microphysics git describe: 23.11-12-g965a061a reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014991744 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.357724228 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.395620861 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.365378274 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.335874238 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.364207668 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.33485513 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.311046849 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.309682878 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.310970067 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.3117876 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009776462 seconds Ending run at 06:26:57 UTC on 2023-11-28. Run time = 3.598883076 Run time without initialization = 3.412743001 Average number of zones advanced per microsecond: 0.768 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.598 ... 3.599 ... 3.599 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3040 2.3680 2.4701 68.63% Gravity::make_radial_gravity() 21 0.2995 0.314 0.3283 9.12% check_for_negative_density() 10 0.04032 0.1486 0.2173 6.04% Castro::initData() 1 0.04776 0.08517 0.1205 3.35% Castro::estTimeStep() 21 0.02607 0.07199 0.117 3.25% amrex::Copy() 193 0.06251 0.07594 0.08358 2.32% FabArray::setVal() 143 0.06342 0.07096 0.08204 2.28% FabArray::ParallelCopy_finish() 41 0.035 0.05344 0.08025 2.23% Castro::reset_internal_energy(Fab) 1008 0.04398 0.04785 0.05213 1.45% Castro::normalize_species() 62 0.04149 0.04221 0.04305 1.20% FabArray::ParallelCopy_nowait() 41 0.03488 0.04108 0.04285 1.19% StateData::FillBoundary(geom) 41 0.0288 0.03229 0.03616 1.00% FillPatchIterator::Initialize 41 0.02796 0.03281 0.03457 0.96% Gravity::interpolate_monopole_grav() 21 0.0274 0.02933 0.03009 0.84% Castro::construct_new_gravity_source() 10 0.02197 0.02504 0.02802 0.78% Castro::computeTemp() 63 0.01758 0.01947 0.02139 0.59% Castro::initialize_do_advance() 10 0.01205 0.01782 0.02075 0.58% VisMF::Write(FabArray) 2 0.01236 0.01303 0.01577 0.44% Castro::initialize_advance() 10 0.0084 0.01115 0.01426 0.40% FabArray::Saxpy() 20 0.01058 0.01211 0.01285 0.36% MultiFab::contains_nan() 20 0.01074 0.01167 0.01277 0.35% FabArray::setDomainBndry() 41 0.006658 0.009365 0.01035 0.29% Castro::construct_old_gravity_source() 10 0.006841 0.009329 0.009948 0.28% Amr::writePlotFile() 2 0.006442 0.009218 0.009884 0.27% Castro::initMFs() 1 0.006379 0.006394 0.006412 0.18% Castro::enforce_min_density() 62 0.005763 0.005997 0.006257 0.17% Castro::construct_new_source() 50 0.005507 0.005934 0.006181 0.17% Gravity::get_new_grav_vector() 11 0.00287 0.003832 0.005781 0.16% StateData::define() 4 0.00526 0.005281 0.005301 0.15% main() 1 0.004233 0.004696 0.005114 0.14% Castro::swap_state_time_levels() 10 0.003179 0.004199 0.004441 0.12% Amr::coarseTimeStep() 10 0.001237 0.002284 0.003459 0.10% Gravity::get_old_grav_vector() 10 0.001438 0.00195 0.002287 0.06% Castro::buildMetrics() 1 0.00148 0.001497 0.001512 0.04% Castro::finalize_do_advance() 10 0.000515 0.001038 0.001314 0.04% AmrLevel::FillPatch() 41 0.0006902 0.0008589 0.001019 0.03% Amr::timeStep() 10 0.0001748 0.0002355 0.0004821 0.01% Amr::InitAmr() 1 0.0002725 0.0002941 0.0004027 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002798 0.0002974 0.0003193 0.01% Castro::do_advance_ctu() 10 0.0001252 0.0001394 0.0001665 0.00% Castro::clean_state() 62 0.0001359 0.0001464 0.0001578 0.00% StateDataPhysBCFunct::() 41 0.0001141 0.0001203 0.000133 0.00% DistributionMapping::LeastUsedCPUs() 1 8.258e-06 0.0001112 0.0001269 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001043 0.0001099 0.0001232 0.00% Castro::finalize_advance() 10 8.324e-05 9.48e-05 0.0001144 0.00% Castro::do_old_sources() 10 7.86e-05 8.871e-05 0.0001035 0.00% Castro::Castro() 1 6.085e-05 7.31e-05 0.0001004 0.00% Castro::enforce_consistent_e() 1 7.658e-05 8.822e-05 9.621e-05 0.00% FabArray::ParallelCopy() 41 7.47e-05 8.539e-05 9.576e-05 0.00% Amr::FinalizeInit() 1 3.898e-06 1.489e-05 8.491e-05 0.00% Castro::construct_old_source() 50 6.46e-05 7.263e-05 8.278e-05 0.00% FillPatchSingleLevel 41 6.406e-05 6.85e-05 7.326e-05 0.00% Amr::writeSmallPlotFile() 1 3.144e-05 5.503e-05 6.754e-05 0.00% Castro::do_new_sources() 10 5.751e-05 6.274e-05 6.618e-05 0.00% FabArrayBase::getCPC() 41 3.844e-05 5.101e-05 6.257e-05 0.00% Castro::subcycle_advance_ctu() 10 4.328e-05 4.954e-05 6.098e-05 0.00% Castro::apply_source_to_state() 20 3.98e-05 4.477e-05 5.288e-05 0.00% Castro::advance() 10 3.988e-05 4.317e-05 5.185e-05 0.00% Castro::construct_new_gravity() 10 3.495e-05 3.868e-05 4.264e-05 0.00% Castro::construct_old_gravity() 10 3.622e-05 3.751e-05 4.019e-05 0.00% Amr::defBaseLevel() 1 2.361e-05 3.182e-05 3.851e-05 0.00% Castro::check_for_nan() 20 2.254e-05 2.476e-05 3.205e-05 0.00% FabArrayBase::CPC::define() 2 2.317e-05 2.563e-05 3.149e-05 0.00% Castro::enforce_speed_limit() 62 2.486e-05 2.843e-05 3.146e-05 0.00% Castro::expand_state() 10 2.049e-05 2.574e-05 2.788e-05 0.00% Castro::post_timestep() 10 1.387e-05 1.686e-05 2.376e-05 0.00% Castro::create_source_corrector() 10 7.516e-06 9.984e-06 1.758e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.393e-05 1.581e-05 1.692e-05 0.00% Castro::post_init() 1 1.375e-05 1.488e-05 1.68e-05 0.00% Gravity::set_mass_offset() 10 9.983e-06 1.198e-05 1.35e-05 0.00% Castro::computeNewDt() 9 7.422e-06 8.807e-06 1.089e-05 0.00% Gravity::swapTimeLevels() 10 7.485e-06 9.217e-06 1.076e-05 0.00% Amr::initSubcycle() 1 9.488e-06 9.96e-06 1.057e-05 0.00% Castro::FluxRegFineAdd() 10 2.006e-06 3.233e-06 9.016e-06 0.00% Castro::FluxRegCrseInit 10 6.845e-06 7.6e-06 8.665e-06 0.00% Castro::retry_advance_ctu() 10 6.399e-06 7.72e-06 8.517e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.776e-06 6.5e-06 7.32e-06 0.00% Castro::computeInitialDt() 2 3.276e-06 4.238e-06 5.201e-06 0.00% Amr::InitializeInit() 1 1.707e-06 2.26e-06 4.328e-06 0.00% Castro::post_regrid() 1 2.362e-06 3.547e-06 4.305e-06 0.00% Amr::init() 1 2.047e-06 2.311e-06 2.663e-06 0.00% Amr::initialInit() 1 1.242e-06 1.732e-06 1.989e-06 0.00% DistributionMapping::Distribute() 1 8.95e-07 1.058e-06 1.147e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.598 3.599 3.599 100.00% Amr::coarseTimeStep() 10 3.398 3.398 3.398 94.41% Amr::timeStep() 10 3.384 3.385 3.386 94.08% Castro::advance() 10 3.368 3.369 3.37 93.62% Castro::subcycle_advance_ctu() 10 3.286 3.293 3.299 91.65% Castro::do_advance_ctu() 10 3.286 3.293 3.298 91.65% Castro::construct_ctu_hydro_source() 10 2.534 2.538 2.542 70.64% Gravity::make_radial_gravity() 21 0.3144 0.3297 0.3419 9.50% Gravity::get_new_grav_vector() 11 0.2217 0.2244 0.2268 6.30% check_for_negative_density() 10 0.04032 0.1486 0.2173 6.04% AmrLevel::FillPatch() 41 0.1816 0.1995 0.2129 5.92% Castro::construct_new_gravity() 10 0.1978 0.1992 0.201 5.58% Castro::construct_old_gravity() 10 0.1798 0.1885 0.1974 5.49% Gravity::get_old_grav_vector() 10 0.1792 0.1879 0.1969 5.47% Amr::init() 1 0.1856 0.1857 0.1857 5.16% FillPatchIterator::Initialize 41 0.1534 0.1694 0.1806 5.02% Castro::initialize_do_advance() 10 0.1601 0.1687 0.1781 4.95% Amr::initialInit() 1 0.1703 0.1705 0.1708 4.75% FillPatchIterator::FillFromLevel0() 41 0.1109 0.1273 0.1452 4.03% FillPatchSingleLevel 41 0.1108 0.1272 0.145 4.03% Amr::InitializeInit() 1 0.06826 0.1059 0.1414 3.93% Amr::defBaseLevel() 1 0.06825 0.1059 0.1414 3.93% Castro::initData() 1 0.05167 0.08929 0.1248 3.47% Castro::expand_state() 10 0.1032 0.1138 0.1233 3.43% Castro::clean_state() 62 0.1091 0.1151 0.1221 3.39% Castro::estTimeStep() 21 0.02607 0.07199 0.117 3.25% FabArray::ParallelCopy() 41 0.07679 0.09468 0.1153 3.20% Amr::FinalizeInit() 1 0.02889 0.06463 0.1022 2.84% Castro::do_old_sources() 10 0.0889 0.09257 0.09628 2.68% amrex::Copy() 193 0.06251 0.07594 0.08358 2.32% FabArray::setVal() 143 0.06342 0.07096 0.08204 2.28% FabArray::ParallelCopy_finish() 41 0.035 0.05344 0.08025 2.23% Castro::initialize_advance() 10 0.06706 0.07202 0.07905 2.20% Castro::computeInitialDt() 2 0.002387 0.0379 0.07556 2.10% Castro::do_new_sources() 10 0.05737 0.06474 0.07454 2.07% Castro::computeTemp() 63 0.06184 0.06762 0.07383 2.05% Castro::reset_internal_energy(MultiFab) 63 0.04426 0.04815 0.05244 1.46% Castro::reset_internal_energy(Fab) 1008 0.04398 0.04785 0.05213 1.45% Castro::normalize_species() 62 0.04149 0.04221 0.04305 1.20% FabArray::ParallelCopy_nowait() 41 0.03496 0.04115 0.04293 1.19% StateDataPhysBCFunct::() 41 0.02892 0.03241 0.03627 1.01% StateData::FillBoundary(geom) 41 0.0288 0.03229 0.03616 1.00% Castro::finalize_do_advance() 10 0.01526 0.02575 0.03427 0.95% Castro::construct_new_source() 50 0.02785 0.03098 0.03414 0.95% Gravity::interpolate_monopole_grav() 21 0.0274 0.02933 0.03009 0.84% Castro::construct_new_gravity_source() 10 0.02197 0.02504 0.02802 0.78% Castro::post_init() 1 0.02618 0.02642 0.02666 0.74% Amr::writePlotFile() 2 0.02479 0.02503 0.02526 0.70% Castro::post_timestep() 10 0.0151 0.01573 0.01637 0.45% VisMF::Write(FabArray) 2 0.01236 0.01303 0.01577 0.44% Castro::apply_source_to_state() 20 0.01064 0.01215 0.0129 0.36% FabArray::Saxpy() 20 0.01058 0.01211 0.01285 0.36% Castro::check_for_nan() 20 0.01076 0.0117 0.0128 0.36% MultiFab::contains_nan() 20 0.01074 0.01167 0.01277 0.35% Castro::Castro() 1 0.01112 0.01116 0.01119 0.31% FabArray::setDomainBndry() 41 0.006658 0.009365 0.01035 0.29% Castro::construct_old_source() 50 0.006909 0.009401 0.01003 0.28% Castro::construct_old_gravity_source() 10 0.006841 0.009329 0.009948 0.28% Castro::computeNewDt() 9 0.009384 0.009395 0.009402 0.26% Castro::initMFs() 1 0.006379 0.006394 0.006412 0.18% Castro::enforce_min_density() 62 0.005763 0.005997 0.006257 0.17% AmrLevel::AmrLevel(dm) 1 0.005274 0.005297 0.005318 0.15% StateData::define() 4 0.00526 0.005281 0.005301 0.15% Castro::swap_state_time_levels() 10 0.003179 0.004199 0.004441 0.12% Castro::finalize_advance() 10 0.002979 0.003435 0.003871 0.11% Castro::post_regrid() 1 0.001571 0.001614 0.00168 0.05% Castro::buildMetrics() 1 0.001636 0.00165 0.001661 0.05% Amr::InitAmr() 1 0.0002829 0.0003041 0.0004126 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.295e-05 0.0001187 0.0001349 0.00% DistributionMapping::LeastUsedCPUs() 1 8.258e-06 0.0001112 0.0001269 0.00% Castro::enforce_consistent_e() 1 7.658e-05 8.822e-05 9.621e-05 0.00% FabArrayBase::getCPC() 41 6.279e-05 7.664e-05 8.647e-05 0.00% Amr::writeSmallPlotFile() 1 3.144e-05 5.503e-05 6.754e-05 0.00% FabArrayBase::CPC::define() 2 2.317e-05 2.563e-05 3.149e-05 0.00% Castro::enforce_speed_limit() 62 2.486e-05 2.843e-05 3.146e-05 0.00% Castro::create_source_corrector() 10 7.516e-06 9.984e-06 1.758e-05 0.00% Gravity::set_mass_offset() 10 9.983e-06 1.198e-05 1.35e-05 0.00% Gravity::swapTimeLevels() 10 7.485e-06 9.217e-06 1.076e-05 0.00% Amr::initSubcycle() 1 9.488e-06 9.96e-06 1.057e-05 0.00% Castro::FluxRegFineAdd() 10 2.006e-06 3.233e-06 9.016e-06 0.00% Castro::FluxRegCrseInit 10 6.845e-06 7.6e-06 8.665e-06 0.00% Castro::retry_advance_ctu() 10 6.399e-06 7.72e-06 8.517e-06 0.00% DistributionMapping::Distribute() 1 8.95e-07 1.058e-06 1.147e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 33 B 36 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.11-19-g4b64003c8009) finalized