Initializing AMReX (23.11-20-g4b8dd0373188)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.11-20-g4b8dd0373188) initialized Starting run at 06:36:09 UTC on 2023-11-29. Successfully read inputs file ... Castro git describe: 23.11-8-ge59d0ae2d AMReX git describe: 23.11-20-g4b8dd0373 Microphysics git describe: 23.11-18-gf104eff3 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015112629 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.353263711 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.349080262 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.342696718 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.338077313 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.363327894 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.33861801 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.311606027 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.311691683 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.31256477 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.311849058 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009740516 seconds Ending run at 06:36:13 UTC on 2023-11-29. Run time = 3.592248427 Run time without initialization = 3.348002881 Average number of zones advanced per microsecond: 0.783 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.592 ... 3.592 ... 3.592 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2706 2.3435 2.4525 68.27% Gravity::make_radial_gravity() 21 0.2945 0.3058 0.3179 8.85% check_for_negative_density() 10 0.01332 0.1275 0.2014 5.61% Castro::estTimeStep() 21 0.02541 0.1099 0.1673 4.66% Castro::initData() 1 0.04734 0.09539 0.1656 4.61% FabArray::ParallelCopy_finish() 41 0.04013 0.05343 0.08405 2.34% amrex::Copy() 193 0.06449 0.07558 0.08261 2.30% FabArray::setVal() 143 0.06292 0.06992 0.08233 2.29% Castro::reset_internal_energy(Fab) 1008 0.04571 0.04874 0.05177 1.44% Castro::normalize_species() 62 0.04098 0.04204 0.04284 1.19% FabArray::ParallelCopy_nowait() 41 0.03545 0.04027 0.04172 1.16% StateData::FillBoundary(geom) 41 0.02864 0.03135 0.03544 0.99% FillPatchIterator::Initialize 41 0.0273 0.03168 0.03445 0.96% Gravity::interpolate_monopole_grav() 21 0.0273 0.02905 0.02979 0.83% Castro::construct_new_gravity_source() 10 0.02265 0.02509 0.02884 0.80% Castro::computeTemp() 63 0.01722 0.02001 0.02167 0.60% Castro::initialize_do_advance() 10 0.01166 0.01709 0.01989 0.55% VisMF::Write(FabArray) 2 0.01229 0.01311 0.01597 0.44% Castro::initialize_advance() 10 0.00409 0.01021 0.01373 0.38% FabArray::Saxpy() 20 0.01039 0.01241 0.01329 0.37% MultiFab::contains_nan() 20 0.01092 0.01167 0.01244 0.35% FabArray::setDomainBndry() 41 0.006662 0.009403 0.01197 0.33% Castro::initMFs() 1 0.006372 0.00747 0.01041 0.29% Amr::writePlotFile() 2 0.00633 0.009465 0.01024 0.29% Castro::construct_old_gravity_source() 10 0.006964 0.009515 0.0102 0.28% StateData::define() 4 0.005281 0.00613 0.008134 0.23% Castro::enforce_min_density() 62 0.005745 0.006081 0.006578 0.18% Castro::construct_new_source() 50 0.005764 0.00613 0.00636 0.18% Gravity::get_new_grav_vector() 11 0.002999 0.003749 0.005729 0.16% Castro::swap_state_time_levels() 10 0.003125 0.004249 0.005031 0.14% main() 1 0.004084 0.004408 0.004677 0.13% Amr::coarseTimeStep() 10 0.00183 0.00307 0.004257 0.12% Castro::buildMetrics() 1 0.001493 0.001744 0.002355 0.07% Gravity::get_old_grav_vector() 10 0.001579 0.001924 0.002226 0.06% Castro::finalize_do_advance() 10 0.0005054 0.001258 0.001646 0.05% AmrLevel::FillPatch() 41 0.0007611 0.0009548 0.001028 0.03% Amr::InitAmr() 1 0.0002693 0.0003452 0.0004928 0.01% Amr::timeStep() 10 0.0001511 0.0002107 0.0003803 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002658 0.0002982 0.000331 0.01% DistributionMapping::LeastUsedCPUs() 1 7.903e-06 0.0001768 0.0002523 0.01% Castro::clean_state() 62 0.0001417 0.0001684 0.0002174 0.01% Castro::do_advance_ctu() 10 0.0001183 0.0001481 0.0001737 0.00% Castro::enforce_consistent_e() 1 8.339e-05 0.0001057 0.0001501 0.00% StateDataPhysBCFunct::() 41 9.488e-05 0.0001129 0.0001306 0.00% FillPatchIterator::FillFromLevel0() 41 9.831e-05 0.0001094 0.0001223 0.00% Castro::finalize_advance() 10 7.844e-05 9.758e-05 0.0001209 0.00% Castro::do_old_sources() 10 7.824e-05 9.02e-05 0.0001028 0.00% FabArray::ParallelCopy() 41 7.369e-05 8.075e-05 9.075e-05 0.00% Castro::Castro() 1 5.443e-05 6.723e-05 8.349e-05 0.00% Amr::FinalizeInit() 1 3.96e-06 1.454e-05 8.007e-05 0.00% Castro::construct_old_source() 50 5.563e-05 6.931e-05 7.754e-05 0.00% Amr::writeSmallPlotFile() 1 3.057e-05 5.621e-05 7.457e-05 0.00% Castro::do_new_sources() 10 5.345e-05 6.201e-05 7.09e-05 0.00% FillPatchSingleLevel 41 5.824e-05 6.555e-05 7.054e-05 0.00% Castro::subcycle_advance_ctu() 10 4.412e-05 5.192e-05 6.131e-05 0.00% FabArrayBase::getCPC() 41 3.806e-05 4.884e-05 5.793e-05 0.00% Castro::advance() 10 3.127e-05 4.324e-05 5.404e-05 0.00% Castro::apply_source_to_state() 20 3.613e-05 4.357e-05 4.747e-05 0.00% Castro::construct_new_gravity() 10 3.257e-05 3.61e-05 4.285e-05 0.00% Castro::construct_old_gravity() 10 3.145e-05 3.69e-05 4.254e-05 0.00% Castro::enforce_speed_limit() 62 2.51e-05 2.869e-05 3.471e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.482e-05 2.22e-05 3.306e-05 0.00% Amr::defBaseLevel() 1 2.395e-05 2.612e-05 3.136e-05 0.00% FabArrayBase::CPC::define() 2 2.049e-05 2.522e-05 2.962e-05 0.00% Castro::expand_state() 10 2.032e-05 2.335e-05 2.9e-05 0.00% Castro::check_for_nan() 20 2.052e-05 2.32e-05 2.614e-05 0.00% Castro::post_timestep() 10 1.235e-05 1.563e-05 2.576e-05 0.00% Castro::post_init() 1 1.236e-05 1.584e-05 1.992e-05 0.00% Amr::initSubcycle() 1 9.49e-06 1.172e-05 1.708e-05 0.00% Gravity::set_mass_offset() 10 7.901e-06 1.205e-05 1.509e-05 0.00% Castro::computeNewDt() 9 7.741e-06 8.879e-06 1.108e-05 0.00% Castro::create_source_corrector() 10 7.114e-06 8.988e-06 1.094e-05 0.00% Gravity::swapTimeLevels() 10 7.961e-06 9.496e-06 1.06e-05 0.00% Castro::FluxRegCrseInit 10 6.174e-06 7.505e-06 9.119e-06 0.00% Castro::retry_advance_ctu() 10 6.103e-06 7.258e-06 8.218e-06 0.00% Amr::initialInit() 1 1.32e-06 2.46e-06 7.982e-06 0.00% Castro::post_regrid() 1 2.597e-06 4.126e-06 7.704e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.604e-06 5.769e-06 7.347e-06 0.00% Castro::computeInitialDt() 2 3.23e-06 4.002e-06 4.597e-06 0.00% Amr::InitializeInit() 1 1.829e-06 2.354e-06 4.235e-06 0.00% Castro::FluxRegFineAdd() 10 2.02e-06 2.396e-06 2.886e-06 0.00% Amr::init() 1 1.938e-06 2.208e-06 2.472e-06 0.00% DistributionMapping::Distribute() 1 8.09e-07 1.025e-06 1.365e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.592 3.592 3.592 100.00% Amr::coarseTimeStep() 10 3.334 3.334 3.334 92.80% Amr::timeStep() 10 3.319 3.32 3.321 92.46% Castro::advance() 10 3.303 3.304 3.305 91.99% Castro::subcycle_advance_ctu() 10 3.22 3.229 3.235 90.06% Castro::do_advance_ctu() 10 3.22 3.229 3.235 90.06% Castro::construct_ctu_hydro_source() 10 2.489 2.493 2.496 69.49% Gravity::make_radial_gravity() 21 0.3092 0.3212 0.3309 9.21% Amr::init() 1 0.2436 0.2437 0.2438 6.79% Amr::initialInit() 1 0.228 0.2283 0.2286 6.36% Gravity::get_new_grav_vector() 11 0.2156 0.219 0.222 6.18% AmrLevel::FillPatch() 41 0.1779 0.1969 0.2089 5.81% check_for_negative_density() 10 0.01332 0.1275 0.2014 5.61% Amr::InitializeInit() 1 0.06727 0.1174 0.1934 5.38% Amr::defBaseLevel() 1 0.06727 0.1174 0.1934 5.38% Castro::construct_old_gravity() 10 0.1766 0.1834 0.1912 5.32% Castro::construct_new_gravity() 10 0.1857 0.1889 0.1909 5.32% Gravity::get_old_grav_vector() 10 0.1761 0.1828 0.1906 5.31% FillPatchIterator::Initialize 41 0.1488 0.1666 0.1845 5.14% Castro::initialize_do_advance() 10 0.1569 0.1681 0.1754 4.88% Castro::initData() 1 0.05129 0.09958 0.1706 4.75% Castro::estTimeStep() 21 0.02541 0.1099 0.1673 4.66% Amr::FinalizeInit() 1 0.03506 0.1109 0.1611 4.49% FillPatchIterator::FillFromLevel0() 41 0.1124 0.1255 0.1506 4.19% FillPatchSingleLevel 41 0.1123 0.1254 0.1505 4.19% Castro::computeInitialDt() 2 0.002936 0.07909 0.1293 3.60% Castro::expand_state() 10 0.09968 0.1142 0.1225 3.41% Castro::clean_state() 62 0.1096 0.1163 0.1218 3.39% FabArray::ParallelCopy() 41 0.082 0.09386 0.1197 3.33% Castro::do_old_sources() 10 0.08666 0.09148 0.0954 2.66% FabArray::ParallelCopy_finish() 41 0.04013 0.05343 0.08405 2.34% amrex::Copy() 193 0.06449 0.07558 0.08261 2.30% FabArray::setVal() 143 0.06292 0.06992 0.08233 2.29% Castro::initialize_advance() 10 0.06443 0.07172 0.08003 2.23% Castro::do_new_sources() 10 0.05797 0.06515 0.0743 2.07% Castro::computeTemp() 63 0.06323 0.06905 0.07374 2.05% Castro::reset_internal_energy(MultiFab) 63 0.04601 0.04904 0.05208 1.45% Castro::reset_internal_energy(Fab) 1008 0.04571 0.04874 0.05177 1.44% Castro::normalize_species() 62 0.04098 0.04204 0.04284 1.19% FabArray::ParallelCopy_nowait() 41 0.03554 0.04035 0.04179 1.16% StateDataPhysBCFunct::() 41 0.02873 0.03147 0.03554 0.99% StateData::FillBoundary(geom) 41 0.02864 0.03135 0.03544 0.99% Castro::construct_new_source() 50 0.02846 0.03122 0.03499 0.97% Castro::post_init() 1 0.03014 0.03118 0.03169 0.88% Castro::finalize_do_advance() 10 0.0134 0.0228 0.03054 0.85% Gravity::interpolate_monopole_grav() 21 0.0273 0.02905 0.02979 0.83% Castro::construct_new_gravity_source() 10 0.02265 0.02509 0.02884 0.80% Amr::writePlotFile() 2 0.02494 0.0252 0.02535 0.71% Castro::post_timestep() 10 0.01493 0.01574 0.01653 0.46% VisMF::Write(FabArray) 2 0.01229 0.01311 0.01597 0.44% Castro::Castro() 1 0.01015 0.01145 0.0146 0.41% Castro::apply_source_to_state() 20 0.01044 0.01246 0.01333 0.37% FabArray::Saxpy() 20 0.01039 0.01241 0.01329 0.37% Castro::check_for_nan() 20 0.01094 0.01169 0.01246 0.35% MultiFab::contains_nan() 20 0.01092 0.01167 0.01244 0.35% FabArray::setDomainBndry() 41 0.006662 0.009403 0.01197 0.33% Castro::initMFs() 1 0.006372 0.00747 0.01041 0.29% Castro::construct_old_source() 50 0.007025 0.009584 0.01028 0.29% Castro::construct_old_gravity_source() 10 0.006964 0.009515 0.0102 0.28% Castro::computeNewDt() 9 0.009248 0.009252 0.009257 0.26% AmrLevel::AmrLevel(dm) 1 0.005297 0.006152 0.008166 0.23% StateData::define() 4 0.005281 0.00613 0.008134 0.23% Castro::enforce_min_density() 62 0.005745 0.006081 0.006578 0.18% Castro::swap_state_time_levels() 10 0.003125 0.004249 0.005031 0.14% Castro::finalize_advance() 10 0.002967 0.003614 0.00452 0.13% Castro::post_regrid() 1 0.001503 0.001943 0.002842 0.08% Castro::buildMetrics() 1 0.001609 0.001887 0.002567 0.07% Amr::InitAmr() 1 0.0002791 0.000357 0.0005099 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.36e-05 0.0001836 0.0002605 0.01% DistributionMapping::LeastUsedCPUs() 1 7.903e-06 0.0001768 0.0002523 0.01% Castro::enforce_consistent_e() 1 8.339e-05 0.0001057 0.0001501 0.00% FabArrayBase::getCPC() 41 6.607e-05 7.407e-05 8.622e-05 0.00% Amr::writeSmallPlotFile() 1 3.057e-05 5.621e-05 7.457e-05 0.00% Castro::enforce_speed_limit() 62 2.51e-05 2.869e-05 3.471e-05 0.00% FabArrayBase::CPC::define() 2 2.049e-05 2.522e-05 2.962e-05 0.00% Amr::initSubcycle() 1 9.49e-06 1.172e-05 1.708e-05 0.00% Gravity::set_mass_offset() 10 7.901e-06 1.205e-05 1.509e-05 0.00% Castro::create_source_corrector() 10 7.114e-06 8.988e-06 1.094e-05 0.00% Gravity::swapTimeLevels() 10 7.961e-06 9.496e-06 1.06e-05 0.00% Castro::FluxRegCrseInit 10 6.174e-06 7.505e-06 9.119e-06 0.00% Castro::retry_advance_ctu() 10 6.103e-06 7.258e-06 8.218e-06 0.00% Castro::FluxRegFineAdd() 10 2.02e-06 2.396e-06 2.886e-06 0.00% DistributionMapping::Distribute() 1 8.09e-07 1.025e-06 1.365e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 33 B 45 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.11-20-g4b8dd0373188) finalized