Initializing AMReX (23.11-23-g9b733ec45cd9)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.11-23-g9b733ec45cd9) initialized Starting run at 06:24:58 UTC on 2023-11-30. Successfully read inputs file ... Castro git describe: 23.11-9-g352b5aae0 AMReX git describe: 23.11-23-g9b733ec45 Microphysics git describe: 23.11-18-gf104eff3 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014370783 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.361453577 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.363551724 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.358994732 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.330512192 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.343153198 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.35345109 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.310309581 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.30990711 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.306480023 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.30702487 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009640453 seconds Ending run at 06:25:02 UTC on 2023-11-30. Run time = 3.541351351 Run time without initialization = 3.359951193 Average number of zones advanced per microsecond: 0.780 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.54 ... 3.541 ... 3.541 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2835 2.3579 2.3814 67.24% Gravity::make_radial_gravity() 21 0.2883 0.2947 0.3046 8.60% check_for_negative_density() 10 0.06296 0.08864 0.1668 4.71% Castro::initData() 1 0.04736 0.08472 0.1196 3.38% Castro::estTimeStep() 21 0.03637 0.06734 0.0992 2.80% amrex::Copy() 193 0.07988 0.08443 0.09583 2.71% FabArray::setVal() 143 0.07039 0.07887 0.08922 2.52% FabArray::ParallelCopy_finish() 41 0.03552 0.06002 0.07578 2.14% Castro::reset_internal_energy(Fab) 1008 0.04712 0.04883 0.05023 1.42% Castro::normalize_species() 62 0.04074 0.04208 0.044 1.24% FabArray::ParallelCopy_nowait() 41 0.03957 0.0422 0.04377 1.24% FillPatchIterator::Initialize 41 0.02754 0.03539 0.04088 1.15% StateData::FillBoundary(geom) 41 0.03068 0.03211 0.03506 0.99% Gravity::interpolate_monopole_grav() 21 0.02764 0.02918 0.03009 0.85% Castro::construct_new_gravity_source() 10 0.02402 0.02555 0.02903 0.82% Castro::initialize_do_advance() 10 0.01713 0.01972 0.02465 0.70% Castro::computeTemp() 63 0.01912 0.01995 0.02103 0.59% Castro::initialize_advance() 10 0.01086 0.01284 0.01512 0.43% VisMF::Write(FabArray) 2 0.01182 0.01236 0.0148 0.42% FabArray::Saxpy() 20 0.01233 0.01361 0.01451 0.41% FabArray::setDomainBndry() 41 0.007559 0.01052 0.01304 0.37% MultiFab::contains_nan() 20 0.01099 0.0117 0.0124 0.35% Castro::construct_new_source() 50 0.006626 0.007401 0.01129 0.32% Castro::construct_old_gravity_source() 10 0.009326 0.01025 0.01073 0.30% Amr::writePlotFile() 2 0.00646 0.00872 0.009375 0.26% Castro::initMFs() 1 0.00627 0.006338 0.006603 0.19% Castro::enforce_min_density() 62 0.005727 0.006131 0.006542 0.18% StateData::define() 4 0.005163 0.005268 0.00584 0.16% main() 1 0.003039 0.004155 0.004814 0.14% Castro::swap_state_time_levels() 10 0.003392 0.00444 0.004634 0.13% Amr::coarseTimeStep() 10 0.001632 0.003174 0.004545 0.13% Gravity::get_new_grav_vector() 11 0.003095 0.003959 0.004491 0.13% Gravity::get_old_grav_vector() 10 0.001692 0.002115 0.002421 0.07% Castro::buildMetrics() 1 0.001454 0.001487 0.001536 0.04% Castro::finalize_do_advance() 10 0.001002 0.001181 0.001346 0.04% AmrLevel::FillPatch() 41 0.0006614 0.000782 0.0008654 0.02% Amr::InitAmr() 1 0.000254 0.0002927 0.0003974 0.01% Amr::timeStep() 10 0.0001531 0.000209 0.0003871 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002908 0.0003061 0.0003521 0.01% Castro::clean_state() 62 0.0001378 0.0001583 0.0001832 0.01% Castro::do_advance_ctu() 10 0.0001022 0.0001457 0.000178 0.01% FillPatchIterator::FillFromLevel0() 41 9.833e-05 0.0001119 0.0001254 0.00% Castro::do_new_sources() 10 5.5e-05 7.396e-05 0.0001236 0.00% Castro::finalize_advance() 10 7.494e-05 0.0001016 0.0001143 0.00% StateDataPhysBCFunct::() 41 9.353e-05 0.0001052 0.0001108 0.00% DistributionMapping::LeastUsedCPUs() 1 7.295e-06 9.238e-05 0.0001086 0.00% Castro::construct_old_source() 50 5.032e-05 8.201e-05 0.0001073 0.00% Castro::do_old_sources() 10 7.019e-05 9.067e-05 0.000106 0.00% Castro::enforce_consistent_e() 1 8.035e-05 8.948e-05 0.0001017 0.00% FabArray::ParallelCopy() 41 7.185e-05 8.42e-05 9.801e-05 0.00% Amr::FinalizeInit() 1 3.82e-06 1.648e-05 9.652e-05 0.00% Castro::Castro() 1 6.525e-05 7.959e-05 9.15e-05 0.00% FillPatchSingleLevel 41 6.281e-05 6.919e-05 8.697e-05 0.00% Amr::writeSmallPlotFile() 1 3.12e-05 5.308e-05 7.165e-05 0.00% Castro::subcycle_advance_ctu() 10 3.917e-05 5.517e-05 7.015e-05 0.00% Castro::apply_source_to_state() 20 3.878e-05 4.96e-05 5.984e-05 0.00% FabArrayBase::getCPC() 41 3.196e-05 4.4e-05 5.34e-05 0.00% Amr::defBaseLevel() 1 2.89e-05 3.859e-05 5.335e-05 0.00% Castro::advance() 10 3.928e-05 4.537e-05 5.281e-05 0.00% Castro::construct_old_gravity() 10 3.294e-05 3.699e-05 4.26e-05 0.00% Castro::construct_new_gravity() 10 2.885e-05 3.407e-05 4.036e-05 0.00% Castro::enforce_speed_limit() 62 2.312e-05 2.928e-05 4.025e-05 0.00% FabArrayBase::CPC::define() 2 2.538e-05 2.986e-05 3.493e-05 0.00% Castro::expand_state() 10 1.942e-05 2.528e-05 3.204e-05 0.00% Castro::retry_advance_ctu() 10 6.581e-06 1.028e-05 2.876e-05 0.00% Castro::check_for_nan() 20 2.073e-05 2.393e-05 2.847e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.254e-05 1.77e-05 2.321e-05 0.00% Castro::FluxRegCrseInit 10 5.445e-06 1.078e-05 2.313e-05 0.00% Castro::post_timestep() 10 1.243e-05 1.604e-05 2.299e-05 0.00% Gravity::set_mass_offset() 10 9.169e-06 1.223e-05 1.904e-05 0.00% Castro::post_init() 1 1.339e-05 1.526e-05 1.741e-05 0.00% Gravity::swapTimeLevels() 10 8.587e-06 1.031e-05 1.292e-05 0.00% Amr::initSubcycle() 1 9.664e-06 1.028e-05 1.102e-05 0.00% Castro::create_source_corrector() 10 7.289e-06 8.647e-06 1.004e-05 0.00% Castro::computeNewDt() 9 7.981e-06 8.381e-06 9.261e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.72e-06 5.238e-06 7.663e-06 0.00% Castro::post_regrid() 1 2.032e-06 3.498e-06 5.82e-06 0.00% Castro::computeInitialDt() 2 3.24e-06 4.047e-06 5.385e-06 0.00% Amr::InitializeInit() 1 1.795e-06 2.408e-06 4.665e-06 0.00% Amr::init() 1 2.021e-06 2.43e-06 3.358e-06 0.00% Castro::FluxRegFineAdd() 10 1.784e-06 2.278e-06 2.925e-06 0.00% Amr::initialInit() 1 1.57e-06 1.806e-06 2.052e-06 0.00% DistributionMapping::Distribute() 1 8.19e-07 1.023e-06 1.708e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.54 3.541 3.541 100.00% Amr::coarseTimeStep() 10 3.346 3.346 3.346 94.47% Amr::timeStep() 10 3.331 3.332 3.333 94.13% Castro::advance() 10 3.315 3.316 3.317 93.67% Castro::subcycle_advance_ctu() 10 3.226 3.232 3.238 91.42% Castro::do_advance_ctu() 10 3.226 3.232 3.238 91.42% Castro::construct_ctu_hydro_source() 10 2.466 2.468 2.472 69.81% Gravity::make_radial_gravity() 21 0.3057 0.3123 0.3204 9.05% AmrLevel::FillPatch() 41 0.193 0.2134 0.2339 6.60% Gravity::get_new_grav_vector() 11 0.207 0.2084 0.2095 5.92% FillPatchIterator::Initialize 41 0.1607 0.1807 0.1995 5.63% Castro::construct_old_gravity() 10 0.1837 0.1902 0.1982 5.60% Gravity::get_old_grav_vector() 10 0.1831 0.1894 0.197 5.56% Castro::initialize_do_advance() 10 0.1685 0.1811 0.1922 5.43% Castro::construct_new_gravity() 10 0.1845 0.1854 0.1859 5.25% Amr::init() 1 0.1809 0.181 0.181 5.11% check_for_negative_density() 10 0.06296 0.08864 0.1668 4.71% Amr::initialInit() 1 0.1663 0.1665 0.1667 4.71% FillPatchIterator::FillFromLevel0() 41 0.1098 0.1348 0.1514 4.28% FillPatchSingleLevel 41 0.1097 0.1347 0.1513 4.27% Amr::InitializeInit() 1 0.06792 0.1053 0.14 3.95% Amr::defBaseLevel() 1 0.06792 0.1053 0.14 3.95% Castro::expand_state() 10 0.1119 0.1238 0.1367 3.86% Castro::initData() 1 0.05153 0.08886 0.1237 3.49% Castro::clean_state() 62 0.113 0.1165 0.1211 3.42% FabArray::ParallelCopy() 41 0.07743 0.1024 0.1188 3.36% Castro::do_old_sources() 10 0.09472 0.09985 0.1034 2.92% Castro::estTimeStep() 21 0.03637 0.06734 0.0992 2.80% Amr::FinalizeInit() 1 0.02631 0.06118 0.09869 2.79% amrex::Copy() 193 0.07988 0.08443 0.09583 2.71% FabArray::setVal() 143 0.07039 0.07887 0.08922 2.52% Castro::initialize_advance() 10 0.07394 0.07944 0.08586 2.42% Castro::do_new_sources() 10 0.06274 0.06881 0.07822 2.21% FabArray::ParallelCopy_finish() 41 0.03552 0.06002 0.07578 2.14% Castro::computeInitialDt() 2 0.002363 0.03701 0.07444 2.10% Castro::computeTemp() 63 0.06654 0.06909 0.07157 2.02% Castro::reset_internal_energy(MultiFab) 63 0.04741 0.04914 0.05054 1.43% Castro::reset_internal_energy(Fab) 1008 0.04712 0.04883 0.05023 1.42% Castro::normalize_species() 62 0.04074 0.04208 0.044 1.24% FabArray::ParallelCopy_nowait() 41 0.03964 0.04228 0.04383 1.24% Castro::construct_new_source() 50 0.03065 0.03295 0.04032 1.14% StateDataPhysBCFunct::() 41 0.03077 0.03221 0.03517 0.99% StateData::FillBoundary(geom) 41 0.03068 0.03211 0.03506 0.99% Gravity::interpolate_monopole_grav() 21 0.02764 0.02918 0.03009 0.85% Castro::construct_new_gravity_source() 10 0.02402 0.02555 0.02903 0.82% Castro::finalize_do_advance() 10 0.01327 0.0224 0.0284 0.80% Amr::writePlotFile() 2 0.02398 0.02416 0.02439 0.69% Castro::post_init() 1 0.02368 0.02391 0.0241 0.68% Castro::post_timestep() 10 0.01535 0.01576 0.01633 0.46% VisMF::Write(FabArray) 2 0.01182 0.01236 0.0148 0.42% Castro::apply_source_to_state() 20 0.01239 0.01366 0.01455 0.41% FabArray::Saxpy() 20 0.01233 0.01361 0.01451 0.41% FabArray::setDomainBndry() 41 0.007559 0.01052 0.01304 0.37% Castro::check_for_nan() 20 0.01101 0.01173 0.01242 0.35% MultiFab::contains_nan() 20 0.01099 0.0117 0.0124 0.35% Castro::Castro() 1 0.01096 0.01104 0.01136 0.32% Castro::construct_old_source() 50 0.009377 0.01033 0.01081 0.31% Castro::construct_old_gravity_source() 10 0.009326 0.01025 0.01073 0.30% Castro::computeNewDt() 9 0.009123 0.009126 0.009131 0.26% Castro::initMFs() 1 0.00627 0.006338 0.006603 0.19% Castro::enforce_min_density() 62 0.005727 0.006131 0.006542 0.18% AmrLevel::AmrLevel(dm) 1 0.005176 0.005285 0.005858 0.17% StateData::define() 4 0.005163 0.005268 0.00584 0.16% Castro::finalize_advance() 10 0.00313 0.004335 0.005562 0.16% Castro::swap_state_time_levels() 10 0.003392 0.00444 0.004634 0.13% Castro::post_regrid() 1 0.001467 0.001591 0.001733 0.05% Castro::buildMetrics() 1 0.001593 0.001617 0.001649 0.05% Amr::InitAmr() 1 0.000264 0.000303 0.0004072 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.189e-05 9.864e-05 0.0001146 0.00% DistributionMapping::LeastUsedCPUs() 1 7.295e-06 9.238e-05 0.0001086 0.00% Castro::enforce_consistent_e() 1 8.035e-05 8.948e-05 0.0001017 0.00% FabArrayBase::getCPC() 41 6.169e-05 7.386e-05 8.475e-05 0.00% Amr::writeSmallPlotFile() 1 3.12e-05 5.308e-05 7.165e-05 0.00% Castro::enforce_speed_limit() 62 2.312e-05 2.928e-05 4.025e-05 0.00% FabArrayBase::CPC::define() 2 2.538e-05 2.986e-05 3.493e-05 0.00% Castro::retry_advance_ctu() 10 6.581e-06 1.028e-05 2.876e-05 0.00% Castro::FluxRegCrseInit 10 5.445e-06 1.078e-05 2.313e-05 0.00% Gravity::set_mass_offset() 10 9.169e-06 1.223e-05 1.904e-05 0.00% Gravity::swapTimeLevels() 10 8.587e-06 1.031e-05 1.292e-05 0.00% Amr::initSubcycle() 1 9.664e-06 1.028e-05 1.102e-05 0.00% Castro::create_source_corrector() 10 7.289e-06 8.647e-06 1.004e-05 0.00% Castro::FluxRegFineAdd() 10 1.784e-06 2.278e-06 2.925e-06 0.00% DistributionMapping::Distribute() 1 8.19e-07 1.023e-06 1.708e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 32 B 35 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.11-23-g9b733ec45cd9) finalized