Initializing AMReX (23.11-23-g9b733ec45cd9)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.11-23-g9b733ec45cd9) initialized Starting run at 06:23:37 UTC on 2023-12-01. Successfully read inputs file ... Castro git describe: 23.11-11-g02a2d50bd AMReX git describe: 23.11-23-g9b733ec45 Microphysics git describe: 23.11-19-gcebf6af5 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016526377 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.382472933 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.39278761 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.398728986 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.400404233 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.433688042 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.406977819 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.402414361 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.397876286 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.404704861 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.431408764 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.015897838 seconds Ending run at 06:23:41 UTC on 2023-12-01. Run time = 4.287175221 Run time without initialization = 4.074379206 Average number of zones advanced per microsecond: 0.643 Average number of zones advanced per microsecond per rank: 0.080 TinyProfiler total time across processes [min...avg...max]: 4.286 ... 4.287 ... 4.287 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.5281 2.7442 2.9868 69.67% check_for_negative_density() 10 0.0158 0.2668 0.4836 11.28% Gravity::make_radial_gravity() 21 0.2936 0.3148 0.3346 7.80% Castro::initData() 1 0.04775 0.09175 0.1429 3.33% Castro::estTimeStep() 21 0.03879 0.0853 0.1398 3.26% amrex::Copy() 193 0.0985 0.1092 0.1218 2.84% FabArray::setVal() 143 0.08657 0.09444 0.1005 2.35% FabArray::ParallelCopy_finish() 41 0.05233 0.05879 0.06561 1.53% FabArray::ParallelCopy_nowait() 41 0.05855 0.06171 0.06429 1.50% FillPatchIterator::Initialize 41 0.0485 0.05327 0.05901 1.38% Castro::reset_internal_energy(Fab) 1008 0.04751 0.05092 0.0545 1.27% StateData::FillBoundary(geom) 41 0.03537 0.03924 0.04936 1.15% Castro::normalize_species() 62 0.04196 0.04265 0.0434 1.01% Castro::construct_new_gravity_source() 10 0.02659 0.03058 0.03485 0.81% Gravity::interpolate_monopole_grav() 21 0.02765 0.0292 0.03001 0.70% Castro::initialize_do_advance() 10 0.02245 0.02499 0.02655 0.62% Castro::computeTemp() 63 0.01893 0.021 0.02282 0.53% FabArray::Saxpy() 20 0.01653 0.01848 0.01981 0.46% FabArray::setDomainBndry() 41 0.01638 0.01771 0.01914 0.45% VisMF::Write(FabArray) 2 0.01214 0.01374 0.01838 0.43% Amr::writePlotFile() 2 0.01028 0.01587 0.01829 0.43% MultiFab::contains_nan() 20 0.01343 0.01555 0.01726 0.40% Castro::initialize_advance() 10 0.01345 0.01502 0.01661 0.39% Castro::construct_old_gravity_source() 10 0.01487 0.01541 0.01595 0.37% Castro::construct_new_source() 50 0.00743 0.007964 0.008834 0.21% Castro::enforce_min_density() 62 0.006679 0.007186 0.007431 0.17% Castro::initMFs() 1 0.006474 0.007143 0.007409 0.17% main() 1 0.005428 0.005983 0.00624 0.15% StateData::define() 4 0.005335 0.005838 0.006037 0.14% Gravity::get_new_grav_vector() 11 0.003412 0.004935 0.006018 0.14% Castro::swap_state_time_levels() 10 0.003199 0.004487 0.005345 0.12% Amr::coarseTimeStep() 10 0.0009081 0.002348 0.004052 0.09% Gravity::get_old_grav_vector() 10 0.002869 0.002977 0.003161 0.07% Castro::buildMetrics() 1 0.001512 0.001676 0.001761 0.04% Castro::finalize_do_advance() 10 0.001127 0.001357 0.001507 0.04% AmrLevel::FillPatch() 41 0.0008539 0.001001 0.00109 0.03% Amr::InitAmr() 1 0.0002707 0.0003203 0.0005157 0.01% Amr::timeStep() 10 0.0001754 0.0002487 0.0005048 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003026 0.0003317 0.0003609 0.01% DistributionMapping::LeastUsedCPUs() 1 1.125e-05 0.0002257 0.0002682 0.01% Castro::do_advance_ctu() 10 0.0001667 0.0001992 0.0002643 0.01% Castro::clean_state() 62 0.000173 0.0001996 0.0002276 0.01% StateDataPhysBCFunct::() 41 0.0001336 0.0001484 0.000185 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001415 0.0001608 0.0001832 0.00% Castro::do_old_sources() 10 0.0001239 0.0001394 0.0001655 0.00% Castro::finalize_advance() 10 0.0001104 0.000131 0.0001509 0.00% FabArray::ParallelCopy() 41 0.0001088 0.000116 0.0001234 0.00% Castro::construct_old_source() 50 8.187e-05 0.0001078 0.0001166 0.00% FillPatchSingleLevel 41 9.458e-05 0.0001021 0.0001137 0.00% Castro::do_new_sources() 10 8.032e-05 9.018e-05 0.0001004 0.00% Castro::enforce_consistent_e() 1 7.61e-05 8.57e-05 0.0001002 0.00% Castro::subcycle_advance_ctu() 10 5.383e-05 7.436e-05 9.05e-05 0.00% FabArrayBase::getCPC() 41 6.227e-05 7.848e-05 8.898e-05 0.00% Castro::Castro() 1 5.608e-05 7.126e-05 8.431e-05 0.00% Amr::FinalizeInit() 1 3.806e-06 1.401e-05 8.289e-05 0.00% Castro::apply_source_to_state() 20 6.147e-05 7.144e-05 7.887e-05 0.00% Castro::advance() 10 4.9e-05 5.937e-05 7.431e-05 0.00% Castro::construct_old_gravity() 10 4.424e-05 4.926e-05 6.312e-05 0.00% Castro::expand_state() 10 3.357e-05 4.757e-05 6.191e-05 0.00% Amr::writeSmallPlotFile() 1 3.393e-05 4.358e-05 5.702e-05 0.00% Castro::construct_new_gravity() 10 3.238e-05 4.365e-05 5.654e-05 0.00% Amr::defBaseLevel() 1 2.627e-05 3.592e-05 5.467e-05 0.00% Castro::enforce_speed_limit() 62 3.13e-05 3.746e-05 4.443e-05 0.00% FabArrayBase::CPC::define() 2 2.005e-05 2.513e-05 3.196e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.301e-05 2.119e-05 3.171e-05 0.00% Castro::check_for_nan() 20 2.532e-05 2.865e-05 3.157e-05 0.00% Castro::post_timestep() 10 1.326e-05 1.838e-05 2.375e-05 0.00% Castro::computeNewDt() 9 7.873e-06 9.979e-06 2.162e-05 0.00% Gravity::set_mass_offset() 10 8.48e-06 1.309e-05 1.799e-05 0.00% Castro::post_init() 1 1.223e-05 1.469e-05 1.796e-05 0.00% Gravity::swapTimeLevels() 10 9.745e-06 1.425e-05 1.751e-05 0.00% Castro::create_source_corrector() 10 9.767e-06 1.318e-05 1.733e-05 0.00% Castro::FluxRegCrseInit 10 6.822e-06 9.583e-06 1.283e-05 0.00% Amr::initSubcycle() 1 1.016e-05 1.111e-05 1.166e-05 0.00% Castro::retry_advance_ctu() 10 6.092e-06 7.396e-06 8.509e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.108e-06 5.402e-06 7.202e-06 0.00% Amr::InitializeInit() 1 1.969e-06 2.661e-06 6.73e-06 0.00% Castro::computeInitialDt() 2 2.853e-06 3.448e-06 4.317e-06 0.00% Castro::post_regrid() 1 2.059e-06 2.778e-06 3.792e-06 0.00% Castro::FluxRegFineAdd() 10 1.965e-06 2.421e-06 3.03e-06 0.00% Amr::init() 1 1.72e-06 2.151e-06 2.863e-06 0.00% DistributionMapping::Distribute() 1 8.84e-07 1.12e-06 2.163e-06 0.00% Amr::initialInit() 1 1.19e-06 1.585e-06 2.019e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 4.286 4.287 4.287 100.00% Amr::coarseTimeStep() 10 4.052 4.052 4.052 94.52% Amr::timeStep() 10 4.038 4.039 4.041 94.25% Castro::advance() 10 4.023 4.024 4.024 93.87% Castro::subcycle_advance_ctu() 10 3.921 3.925 3.929 91.65% Castro::do_advance_ctu() 10 3.921 3.925 3.929 91.65% Castro::construct_ctu_hydro_source() 10 3.027 3.033 3.04 70.90% check_for_negative_density() 10 0.0158 0.2668 0.4836 11.28% Gravity::make_radial_gravity() 21 0.3146 0.3389 0.3609 8.42% AmrLevel::FillPatch() 41 0.2599 0.2759 0.2966 6.92% FillPatchIterator::Initialize 41 0.2227 0.2314 0.2505 5.84% Castro::initialize_do_advance() 10 0.2122 0.2257 0.2425 5.66% Gravity::get_new_grav_vector() 11 0.2281 0.2299 0.2313 5.39% Castro::construct_old_gravity() 10 0.19 0.2098 0.2264 5.28% Gravity::get_old_grav_vector() 10 0.1892 0.2089 0.2257 5.26% Amr::init() 1 0.2121 0.2123 0.2124 4.95% Castro::construct_new_gravity() 10 0.2034 0.2041 0.205 4.78% Amr::initialInit() 1 0.1949 0.1953 0.1958 4.57% FillPatchIterator::FillFromLevel0() 41 0.1537 0.1604 0.1751 4.09% FillPatchSingleLevel 41 0.1535 0.1602 0.175 4.08% Castro::expand_state() 10 0.1437 0.1558 0.1723 4.02% Amr::InitializeInit() 1 0.06678 0.113 0.1655 3.86% Amr::defBaseLevel() 1 0.06677 0.113 0.1655 3.86% Castro::initData() 1 0.0515 0.09568 0.1474 3.44% Castro::estTimeStep() 21 0.03879 0.0853 0.1398 3.26% Castro::do_old_sources() 10 0.1284 0.1324 0.1367 3.19% Amr::FinalizeInit() 1 0.02955 0.08233 0.1281 2.99% Castro::clean_state() 62 0.1158 0.1214 0.1268 2.96% FabArray::ParallelCopy() 41 0.1153 0.1207 0.126 2.94% amrex::Copy() 193 0.0985 0.1092 0.1218 2.84% Castro::computeInitialDt() 2 0.002517 0.05502 0.1013 2.36% FabArray::setVal() 143 0.08657 0.09444 0.1005 2.35% Castro::initialize_advance() 10 0.08945 0.09376 0.0979 2.28% Castro::do_new_sources() 10 0.07009 0.07701 0.08458 1.97% Castro::computeTemp() 63 0.06675 0.07225 0.07753 1.81% FabArray::ParallelCopy_finish() 41 0.05233 0.05879 0.06561 1.53% FabArray::ParallelCopy_nowait() 41 0.05866 0.06182 0.06441 1.50% Castro::reset_internal_energy(MultiFab) 63 0.04782 0.05125 0.05486 1.28% Castro::reset_internal_energy(Fab) 1008 0.04751 0.05092 0.0545 1.27% StateDataPhysBCFunct::() 41 0.03551 0.03939 0.04952 1.16% StateData::FillBoundary(geom) 41 0.03537 0.03924 0.04936 1.15% Castro::normalize_species() 62 0.04196 0.04265 0.0434 1.01% Castro::construct_new_source() 50 0.03415 0.03855 0.04309 1.01% Castro::construct_new_gravity_source() 10 0.02659 0.03058 0.03485 0.81% Amr::writePlotFile() 2 0.03254 0.03301 0.03352 0.78% Castro::finalize_do_advance() 10 0.01296 0.02231 0.03036 0.71% Gravity::interpolate_monopole_grav() 21 0.02765 0.0292 0.03001 0.70% Castro::post_init() 1 0.02643 0.02702 0.02755 0.64% Castro::apply_source_to_state() 20 0.01659 0.01855 0.01988 0.46% FabArray::Saxpy() 20 0.01653 0.01848 0.01981 0.46% FabArray::setDomainBndry() 41 0.01638 0.01771 0.01914 0.45% VisMF::Write(FabArray) 2 0.01214 0.01374 0.01838 0.43% Castro::check_for_nan() 20 0.01346 0.01558 0.01729 0.40% MultiFab::contains_nan() 20 0.01343 0.01555 0.01726 0.40% Castro::post_timestep() 10 0.01467 0.01554 0.01633 0.38% Castro::construct_old_source() 50 0.01495 0.01551 0.01606 0.37% Castro::construct_old_gravity_source() 10 0.01487 0.01541 0.01595 0.37% Castro::Castro() 1 0.009515 0.01117 0.01179 0.27% Castro::computeNewDt() 9 0.009324 0.009341 0.009349 0.22% Castro::enforce_min_density() 62 0.006679 0.007186 0.007431 0.17% Castro::initMFs() 1 0.006474 0.007143 0.007409 0.17% AmrLevel::AmrLevel(dm) 1 0.005348 0.005859 0.006061 0.14% StateData::define() 4 0.005335 0.005838 0.006037 0.14% Castro::swap_state_time_levels() 10 0.003199 0.004487 0.005345 0.12% Castro::finalize_advance() 10 0.003907 0.004572 0.005113 0.12% Castro::buildMetrics() 1 0.001625 0.001807 0.001901 0.04% Castro::post_regrid() 1 0.001483 0.00157 0.001899 0.04% Amr::InitAmr() 1 0.0002809 0.0003314 0.0005273 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 2.058e-05 0.0002322 0.0002763 0.01% DistributionMapping::LeastUsedCPUs() 1 1.125e-05 0.0002257 0.0002682 0.01% FabArrayBase::getCPC() 41 8.406e-05 0.0001036 0.0001209 0.00% Castro::enforce_consistent_e() 1 7.61e-05 8.57e-05 0.0001002 0.00% Amr::writeSmallPlotFile() 1 3.393e-05 4.358e-05 5.702e-05 0.00% Castro::enforce_speed_limit() 62 3.13e-05 3.746e-05 4.443e-05 0.00% FabArrayBase::CPC::define() 2 2.005e-05 2.513e-05 3.196e-05 0.00% Gravity::set_mass_offset() 10 8.48e-06 1.309e-05 1.799e-05 0.00% Gravity::swapTimeLevels() 10 9.745e-06 1.425e-05 1.751e-05 0.00% Castro::create_source_corrector() 10 9.767e-06 1.318e-05 1.733e-05 0.00% Castro::FluxRegCrseInit 10 6.822e-06 9.583e-06 1.283e-05 0.00% Amr::initSubcycle() 1 1.016e-05 1.111e-05 1.166e-05 0.00% Castro::retry_advance_ctu() 10 6.092e-06 7.396e-06 8.509e-06 0.00% Castro::FluxRegFineAdd() 10 1.965e-06 2.421e-06 3.03e-06 0.00% DistributionMapping::Distribute() 1 8.84e-07 1.12e-06 2.163e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 26 B 27 B 32 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.11-23-g9b733ec45cd9) finalized