Initializing AMReX (23.12-5-gefd77ffab39c)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.12-5-gefd77ffab39c) initialized Starting run at 06:24:11 UTC on 2023-12-04. Successfully read inputs file ... Castro git describe: 23.11-12-g4f728c49f AMReX git describe: 23.12-5-gefd77ffab Microphysics git describe: 23.12 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.0140459 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.353642503 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.346879613 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.330439666 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.332066085 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.328893902 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.363725505 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.310628205 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.307074557 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.308935666 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.308219671 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009783659 seconds Ending run at 06:24:14 UTC on 2023-12-04. Run time = 3.50540449 Run time without initialization = 3.305858616 Average number of zones advanced per microsecond: 0.793 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.505 ... 3.505 ... 3.505 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2828 2.3493 2.3896 68.17% Gravity::make_radial_gravity() 21 0.2857 0.2995 0.317 9.04% check_for_negative_density() 10 0.02646 0.07009 0.1387 3.96% Castro::initData() 1 0.0479 0.08855 0.1332 3.80% Castro::estTimeStep() 21 0.02981 0.07665 0.1147 3.27% FabArray::ParallelCopy_finish() 41 0.03528 0.0587 0.1102 3.14% amrex::Copy() 193 0.06226 0.08203 0.1014 2.89% FabArray::setVal() 143 0.05341 0.06767 0.07546 2.15% Castro::reset_internal_energy(Fab) 1008 0.04605 0.04829 0.05386 1.54% FabArray::ParallelCopy_nowait() 41 0.03469 0.0414 0.04355 1.24% Castro::normalize_species() 62 0.04127 0.04188 0.0431 1.23% FillPatchIterator::Initialize 41 0.02597 0.03264 0.03516 1.00% StateData::FillBoundary(geom) 41 0.03074 0.03245 0.03398 0.97% Gravity::interpolate_monopole_grav() 21 0.02844 0.02911 0.02963 0.85% Castro::construct_new_gravity_source() 10 0.02144 0.02401 0.02599 0.74% Castro::computeTemp() 63 0.01904 0.0206 0.02384 0.68% Castro::initialize_do_advance() 10 0.01109 0.01705 0.01844 0.53% VisMF::Write(FabArray) 2 0.01167 0.01264 0.01501 0.43% MultiFab::contains_nan() 20 0.009851 0.01144 0.01434 0.41% Castro::initialize_advance() 10 0.003823 0.0106 0.01427 0.41% FabArray::Saxpy() 20 0.01021 0.01257 0.01389 0.40% FabArray::setDomainBndry() 41 0.006526 0.009582 0.01082 0.31% Amr::writePlotFile() 2 0.006323 0.00871 0.01074 0.31% Castro::construct_old_gravity_source() 10 0.006558 0.009274 0.0102 0.29% Castro::initMFs() 1 0.006238 0.007488 0.01004 0.29% StateData::define() 4 0.005119 0.006014 0.007915 0.23% Castro::enforce_min_density() 62 0.007017 0.007339 0.007731 0.22% Castro::construct_new_source() 50 0.00565 0.006346 0.006762 0.19% main() 1 0.004402 0.004699 0.004871 0.14% Castro::swap_state_time_levels() 10 0.003098 0.004043 0.004368 0.12% Gravity::get_new_grav_vector() 11 0.00297 0.003571 0.004103 0.12% Gravity::get_old_grav_vector() 10 0.001562 0.00231 0.004017 0.11% Amr::coarseTimeStep() 10 0.001146 0.001955 0.0025 0.07% Castro::buildMetrics() 1 0.00148 0.001736 0.002278 0.06% Castro::finalize_do_advance() 10 0.0006113 0.001177 0.001571 0.04% AmrLevel::FillPatch() 41 0.0007581 0.001039 0.00124 0.04% Amr::InitAmr() 1 0.0002754 0.0003501 0.000494 0.01% Amr::timeStep() 10 0.0001687 0.0002243 0.000381 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002734 0.0002994 0.0003374 0.01% DistributionMapping::LeastUsedCPUs() 1 6.932e-06 0.0001832 0.0002598 0.01% Castro::clean_state() 62 0.0001424 0.0001548 0.0001757 0.01% Castro::do_advance_ctu() 10 0.0001263 0.0001503 0.0001721 0.00% StateDataPhysBCFunct::() 41 9.578e-05 0.000116 0.0001399 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001066 0.0001218 0.0001392 0.00% Castro::finalize_advance() 10 8.458e-05 9.672e-05 0.0001299 0.00% FabArray::ParallelCopy() 41 7.002e-05 8.331e-05 9.972e-05 0.00% Castro::enforce_consistent_e() 1 7.581e-05 8.58e-05 9.965e-05 0.00% Castro::do_old_sources() 10 6.943e-05 8.698e-05 9.844e-05 0.00% Amr::FinalizeInit() 1 3.718e-06 1.415e-05 7.881e-05 0.00% Castro::construct_old_source() 50 5.543e-05 6.784e-05 7.804e-05 0.00% Amr::writeSmallPlotFile() 1 2.991e-05 5.381e-05 7.496e-05 0.00% FillPatchSingleLevel 41 5.607e-05 6.788e-05 7.375e-05 0.00% Castro::do_new_sources() 10 5.286e-05 6.302e-05 7.345e-05 0.00% Castro::Castro() 1 5.321e-05 6.235e-05 7.261e-05 0.00% FabArrayBase::getCPC() 41 4.047e-05 5.398e-05 7.217e-05 0.00% Castro::subcycle_advance_ctu() 10 3.755e-05 4.853e-05 5.876e-05 0.00% Castro::construct_old_gravity() 10 3.242e-05 4.061e-05 5.615e-05 0.00% Castro::apply_source_to_state() 20 3.319e-05 4.563e-05 5.578e-05 0.00% Amr::defBaseLevel() 1 2.581e-05 3.748e-05 5.517e-05 0.00% Castro::advance() 10 3.483e-05 4.255e-05 4.876e-05 0.00% FabArrayBase::CPC::define() 2 2.332e-05 2.925e-05 4.492e-05 0.00% Castro::construct_new_gravity() 10 3.058e-05 3.54e-05 4.208e-05 0.00% Castro::create_source_corrector() 10 6.818e-06 1.3e-05 3.571e-05 0.00% Castro::check_for_nan() 20 2.148e-05 2.539e-05 3.487e-05 0.00% Castro::enforce_speed_limit() 62 2.438e-05 2.718e-05 3.223e-05 0.00% Castro::expand_state() 10 1.669e-05 2.515e-05 2.972e-05 0.00% Castro::post_init() 1 1.328e-05 1.712e-05 2.773e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.217e-05 1.781e-05 2.535e-05 0.00% Amr::initSubcycle() 1 9.891e-06 1.252e-05 1.79e-05 0.00% Gravity::set_mass_offset() 10 9.458e-06 1.181e-05 1.773e-05 0.00% Castro::post_timestep() 10 1.087e-05 1.422e-05 1.731e-05 0.00% Castro::computeNewDt() 9 8.003e-06 8.861e-06 1.039e-05 0.00% Gravity::swapTimeLevels() 10 8.33e-06 9.064e-06 1.019e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.268e-06 5.943e-06 9.721e-06 0.00% Castro::FluxRegCrseInit 10 5.854e-06 7.491e-06 8.926e-06 0.00% Castro::retry_advance_ctu() 10 6.343e-06 7.068e-06 8.065e-06 0.00% Amr::InitializeInit() 1 1.789e-06 2.61e-06 4.886e-06 0.00% Castro::computeInitialDt() 2 2.992e-06 3.749e-06 4.852e-06 0.00% Castro::post_regrid() 1 1.694e-06 2.797e-06 4.713e-06 0.00% Castro::FluxRegFineAdd() 10 1.993e-06 2.438e-06 3.248e-06 0.00% Amr::init() 1 1.914e-06 2.217e-06 2.489e-06 0.00% Amr::initialInit() 1 1.332e-06 1.73e-06 2.094e-06 0.00% DistributionMapping::Distribute() 1 8.6e-07 1.098e-06 1.338e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.505 3.505 3.505 100.00% Amr::coarseTimeStep() 10 3.291 3.291 3.291 93.89% Amr::timeStep() 10 3.279 3.279 3.28 93.56% Castro::advance() 10 3.263 3.263 3.264 93.10% Castro::subcycle_advance_ctu() 10 3.185 3.19 3.208 91.52% Castro::do_advance_ctu() 10 3.185 3.19 3.208 91.52% Castro::construct_ctu_hydro_source() 10 2.436 2.44 2.446 69.79% Gravity::make_radial_gravity() 21 0.3028 0.3171 0.3293 9.39% AmrLevel::FillPatch() 41 0.1852 0.2072 0.2325 6.63% Castro::construct_old_gravity() 10 0.1891 0.1991 0.2112 6.02% Gravity::get_old_grav_vector() 10 0.1881 0.1983 0.2106 6.01% FillPatchIterator::Initialize 41 0.1549 0.1752 0.2093 5.97% Gravity::get_new_grav_vector() 11 0.202 0.2047 0.2069 5.90% Amr::init() 1 0.1989 0.1991 0.1991 5.68% Amr::initialInit() 1 0.1848 0.1849 0.1851 5.28% Castro::construct_new_gravity() 10 0.1821 0.1829 0.1842 5.25% FillPatchIterator::FillFromLevel0() 41 0.1105 0.133 0.1768 5.04% FillPatchSingleLevel 41 0.1104 0.1329 0.1767 5.04% Castro::initialize_do_advance() 10 0.1604 0.1689 0.175 4.99% Amr::InitializeInit() 1 0.0674 0.1097 0.159 4.54% Amr::defBaseLevel() 1 0.0674 0.1097 0.159 4.54% FabArray::ParallelCopy() 41 0.07722 0.1003 0.1451 4.14% check_for_negative_density() 10 0.02646 0.07009 0.1387 3.96% Castro::initData() 1 0.0515 0.09228 0.1369 3.91% Castro::expand_state() 10 0.1039 0.1125 0.1273 3.63% Castro::clean_state() 62 0.1132 0.1177 0.1263 3.60% Amr::FinalizeInit() 1 0.02589 0.07524 0.1174 3.35% Castro::estTimeStep() 21 0.02981 0.07665 0.1147 3.27% FabArray::ParallelCopy_finish() 41 0.03528 0.0587 0.1102 3.14% Castro::do_old_sources() 10 0.09047 0.1008 0.1068 3.05% amrex::Copy() 193 0.06226 0.08203 0.1014 2.89% Castro::computeInitialDt() 2 0.002144 0.05162 0.09388 2.68% Castro::computeTemp() 63 0.06536 0.06919 0.0775 2.21% FabArray::setVal() 143 0.05341 0.06767 0.07546 2.15% Castro::initialize_advance() 10 0.05094 0.06967 0.07501 2.14% Castro::do_new_sources() 10 0.06004 0.06356 0.06794 1.94% Castro::reset_internal_energy(MultiFab) 63 0.04632 0.04859 0.05418 1.55% Castro::reset_internal_energy(Fab) 1008 0.04605 0.04829 0.05386 1.54% FabArray::ParallelCopy_nowait() 41 0.0348 0.04149 0.04363 1.24% Castro::normalize_species() 62 0.04127 0.04188 0.0431 1.23% StateDataPhysBCFunct::() 41 0.03087 0.03257 0.03409 0.97% StateData::FillBoundary(geom) 41 0.03074 0.03245 0.03398 0.97% Castro::construct_new_source() 50 0.02709 0.03035 0.03275 0.93% Gravity::interpolate_monopole_grav() 21 0.02844 0.02911 0.02963 0.85% Castro::construct_new_gravity_source() 10 0.02144 0.02401 0.02599 0.74% Amr::writePlotFile() 2 0.02384 0.02398 0.02422 0.69% Castro::post_init() 1 0.02076 0.02289 0.02327 0.66% Castro::finalize_do_advance() 10 0.01248 0.01711 0.02037 0.58% Castro::post_timestep() 10 0.01533 0.01584 0.01621 0.46% VisMF::Write(FabArray) 2 0.01167 0.01264 0.01501 0.43% Castro::check_for_nan() 20 0.009874 0.01146 0.01437 0.41% MultiFab::contains_nan() 20 0.009851 0.01144 0.01434 0.41% Castro::Castro() 1 0.009796 0.01115 0.01414 0.40% Castro::apply_source_to_state() 20 0.01026 0.01262 0.01395 0.40% FabArray::Saxpy() 20 0.01021 0.01257 0.01389 0.40% FabArray::setDomainBndry() 41 0.006526 0.009582 0.01082 0.31% Castro::construct_old_source() 50 0.006613 0.009342 0.01028 0.29% Castro::construct_old_gravity_source() 10 0.006558 0.009274 0.0102 0.29% Castro::initMFs() 1 0.006238 0.007488 0.01004 0.29% Castro::computeNewDt() 9 0.009104 0.009107 0.009111 0.26% AmrLevel::AmrLevel(dm) 1 0.005131 0.006032 0.00794 0.23% StateData::define() 4 0.005119 0.006014 0.007915 0.23% Castro::enforce_min_density() 62 0.007017 0.007339 0.007731 0.22% Castro::swap_state_time_levels() 10 0.003098 0.004043 0.004368 0.12% Castro::post_regrid() 1 0.001515 0.001839 0.003733 0.11% Castro::finalize_advance() 10 0.003074 0.003283 0.003534 0.10% Castro::buildMetrics() 1 0.0016 0.001887 0.002491 0.07% Amr::InitAmr() 1 0.0002862 0.0003626 0.0005119 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.273e-05 0.0001903 0.0002685 0.01% DistributionMapping::LeastUsedCPUs() 1 6.932e-06 0.0001832 0.0002598 0.01% FabArrayBase::getCPC() 41 7.223e-05 8.323e-05 0.0001081 0.00% Castro::enforce_consistent_e() 1 7.581e-05 8.58e-05 9.965e-05 0.00% Amr::writeSmallPlotFile() 1 2.991e-05 5.381e-05 7.496e-05 0.00% FabArrayBase::CPC::define() 2 2.332e-05 2.925e-05 4.492e-05 0.00% Castro::create_source_corrector() 10 6.818e-06 1.3e-05 3.571e-05 0.00% Castro::enforce_speed_limit() 62 2.438e-05 2.718e-05 3.223e-05 0.00% Amr::initSubcycle() 1 9.891e-06 1.252e-05 1.79e-05 0.00% Gravity::set_mass_offset() 10 9.458e-06 1.181e-05 1.773e-05 0.00% Gravity::swapTimeLevels() 10 8.33e-06 9.064e-06 1.019e-05 0.00% Castro::FluxRegCrseInit 10 5.854e-06 7.491e-06 8.926e-06 0.00% Castro::retry_advance_ctu() 10 6.343e-06 7.068e-06 8.065e-06 0.00% Castro::FluxRegFineAdd() 10 1.993e-06 2.438e-06 3.248e-06 0.00% DistributionMapping::Distribute() 1 8.6e-07 1.098e-06 1.338e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 33 B 36 B 44 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.12-5-gefd77ffab39c) finalized