Initializing AMReX (23.12-5-gefd77ffab39c)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.12-5-gefd77ffab39c) initialized Starting run at 06:21:31 UTC on 2023-12-05. Successfully read inputs file ... Castro git describe: 23.11-12-g4f728c49f AMReX git describe: 23.12-5-gefd77ffab Microphysics git describe: 23.12 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016517964 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.378697868 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.393457606 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.396325974 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.396559913 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.423625475 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.394891425 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.391077458 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.39762228 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.394126305 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.420495932 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.062491546 seconds Ending run at 06:21:35 UTC on 2023-12-05. Run time = 4.261944544 Run time without initialization = 4.058006441 Average number of zones advanced per microsecond: 0.646 Average number of zones advanced per microsecond per rank: 0.081 TinyProfiler total time across processes [min...avg...max]: 4.261 ... 4.262 ... 4.262 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.5115 2.7125 2.9160 68.42% check_for_negative_density() 10 0.02585 0.2332 0.4388 10.30% Gravity::make_radial_gravity() 21 0.3008 0.3173 0.3315 7.78% Castro::estTimeStep() 21 0.02893 0.08439 0.134 3.15% Castro::initData() 1 0.04712 0.08791 0.1335 3.13% amrex::Copy() 193 0.0985 0.109 0.1186 2.78% FabArray::setVal() 143 0.08675 0.0936 0.09945 2.33% FabArray::ParallelCopy_finish() 41 0.05122 0.0609 0.06788 1.59% Amr::writePlotFile() 2 0.05538 0.06133 0.06294 1.48% FabArray::ParallelCopy_nowait() 41 0.05769 0.05884 0.05998 1.41% FillPatchIterator::Initialize 41 0.04605 0.0515 0.05627 1.32% Castro::reset_internal_energy(Fab) 1008 0.04925 0.05098 0.05277 1.24% Castro::normalize_species() 62 0.04256 0.04327 0.04409 1.03% StateData::FillBoundary(geom) 41 0.03656 0.03878 0.04133 0.97% Castro::construct_new_gravity_source() 10 0.02678 0.03001 0.03337 0.78% Gravity::interpolate_monopole_grav() 21 0.0271 0.029 0.03008 0.71% Castro::initialize_do_advance() 10 0.02284 0.02481 0.02753 0.65% FabArray::setDomainBndry() 41 0.0157 0.01863 0.02285 0.54% Castro::computeTemp() 63 0.02019 0.02113 0.0222 0.52% VisMF::Write(FabArray) 2 0.01259 0.01429 0.02054 0.48% FabArray::Saxpy() 20 0.01656 0.01765 0.01925 0.45% MultiFab::contains_nan() 20 0.01227 0.014 0.01624 0.38% Castro::initialize_advance() 10 0.01377 0.01519 0.01624 0.38% Castro::construct_old_gravity_source() 10 0.01406 0.01456 0.01497 0.35% StateData::define() 4 0.005207 0.006067 0.00907 0.21% Castro::enforce_min_density() 62 0.00803 0.008271 0.008555 0.20% Castro::construct_new_source() 50 0.006821 0.00761 0.008209 0.19% main() 1 0.006472 0.007402 0.007897 0.19% Castro::initMFs() 1 0.006246 0.006731 0.007732 0.18% Gravity::get_new_grav_vector() 11 0.00421 0.004943 0.005803 0.14% Castro::swap_state_time_levels() 10 0.003196 0.004445 0.00496 0.12% Amr::coarseTimeStep() 10 0.001501 0.002661 0.003643 0.09% Gravity::get_old_grav_vector() 10 0.002686 0.002922 0.003221 0.08% Castro::buildMetrics() 1 0.001494 0.001573 0.001838 0.04% Castro::finalize_do_advance() 10 0.001229 0.001563 0.001812 0.04% AmrLevel::FillPatch() 41 0.001066 0.001157 0.00123 0.03% Amr::timeStep() 10 0.0001844 0.0002489 0.00053 0.01% Amr::InitAmr() 1 0.0002727 0.0003508 0.0005166 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003043 0.0003317 0.0003644 0.01% DistributionMapping::LeastUsedCPUs() 1 5.885e-06 0.0001943 0.0002767 0.01% Castro::clean_state() 62 0.0001763 0.0001962 0.0002228 0.01% Castro::do_advance_ctu() 10 0.000169 0.0001975 0.0002208 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001419 0.0001651 0.000216 0.01% StateDataPhysBCFunct::() 41 0.0001143 0.0001434 0.0001684 0.00% Castro::do_old_sources() 10 0.0001242 0.0001325 0.0001449 0.00% Castro::finalize_advance() 10 9.646e-05 0.0001215 0.00014 0.00% FabArray::ParallelCopy() 41 9.562e-05 0.0001089 0.0001311 0.00% Castro::construct_old_source() 50 8.619e-05 0.0001053 0.0001233 0.00% FillPatchSingleLevel 41 8.818e-05 9.273e-05 9.732e-05 0.00% Castro::enforce_consistent_e() 1 7.483e-05 8.472e-05 9.487e-05 0.00% Castro::subcycle_advance_ctu() 10 6.092e-05 7.132e-05 9.329e-05 0.00% Castro::do_new_sources() 10 7.218e-05 8.024e-05 8.818e-05 0.00% FabArrayBase::getCPC() 41 6.487e-05 8.052e-05 8.807e-05 0.00% Castro::Castro() 1 4.956e-05 6.744e-05 8.516e-05 0.00% Castro::apply_source_to_state() 20 5.9e-05 6.617e-05 7.317e-05 0.00% Amr::FinalizeInit() 1 3.147e-06 1.305e-05 7.1e-05 0.00% Castro::advance() 10 4.598e-05 5.427e-05 6.32e-05 0.00% Amr::writeSmallPlotFile() 1 3.149e-05 4.343e-05 5.616e-05 0.00% Castro::construct_old_gravity() 10 4.137e-05 4.639e-05 5.511e-05 0.00% Castro::construct_new_gravity() 10 3e-05 4.45e-05 5.51e-05 0.00% Castro::expand_state() 10 3.19e-05 4.122e-05 5.146e-05 0.00% Castro::enforce_speed_limit() 62 3.052e-05 3.635e-05 4.452e-05 0.00% Amr::defBaseLevel() 1 2.531e-05 3.257e-05 4.444e-05 0.00% Castro::check_for_nan() 20 2.568e-05 2.973e-05 3.566e-05 0.00% FabArrayBase::CPC::define() 2 2.079e-05 2.476e-05 2.887e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.299e-05 1.742e-05 2.279e-05 0.00% Castro::post_timestep() 10 1.391e-05 1.728e-05 2.022e-05 0.00% Castro::post_init() 1 1.385e-05 1.547e-05 1.857e-05 0.00% Amr::initSubcycle() 1 9.816e-06 1.239e-05 1.832e-05 0.00% Gravity::set_mass_offset() 10 8.228e-06 1.223e-05 1.633e-05 0.00% Gravity::swapTimeLevels() 10 9.032e-06 1.222e-05 1.537e-05 0.00% Castro::create_source_corrector() 10 9e-06 1.19e-05 1.485e-05 0.00% Castro::FluxRegCrseInit 10 7.018e-06 8.863e-06 1.171e-05 0.00% Castro::retry_advance_ctu() 10 6.509e-06 7.581e-06 1.084e-05 0.00% Castro::computeNewDt() 9 7.978e-06 9.159e-06 1.071e-05 0.00% Amr::initialInit() 1 1.406e-06 3.183e-06 8.329e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.073e-06 5.901e-06 7.596e-06 0.00% Amr::InitializeInit() 1 1.702e-06 2.436e-06 4.603e-06 0.00% Castro::computeInitialDt() 2 2.902e-06 3.336e-06 3.946e-06 0.00% Castro::post_regrid() 1 1.742e-06 2.405e-06 3.548e-06 0.00% Castro::FluxRegFineAdd() 10 2.295e-06 2.787e-06 3.427e-06 0.00% Amr::init() 1 1.791e-06 2.281e-06 2.809e-06 0.00% DistributionMapping::Distribute() 1 1.048e-06 1.174e-06 1.328e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 4.261 4.261 4.262 100.00% Amr::coarseTimeStep() 10 3.988 3.988 3.988 93.56% Amr::timeStep() 10 3.974 3.975 3.976 93.28% Castro::advance() 10 3.957 3.958 3.959 92.89% Castro::subcycle_advance_ctu() 10 3.857 3.86 3.862 90.61% Castro::do_advance_ctu() 10 3.857 3.86 3.862 90.61% Castro::construct_ctu_hydro_source() 10 2.964 2.968 2.972 69.72% check_for_negative_density() 10 0.02585 0.2332 0.4388 10.30% Gravity::make_radial_gravity() 21 0.3231 0.3407 0.3565 8.37% AmrLevel::FillPatch() 41 0.2621 0.2746 0.2892 6.78% Castro::initialize_do_advance() 10 0.2155 0.2267 0.2411 5.66% FillPatchIterator::Initialize 41 0.2206 0.2293 0.2395 5.62% Gravity::get_new_grav_vector() 11 0.2318 0.2337 0.2348 5.51% Castro::construct_old_gravity() 10 0.1912 0.2062 0.218 5.12% Gravity::get_old_grav_vector() 10 0.1904 0.2053 0.2172 5.10% Castro::construct_new_gravity() 10 0.2062 0.2078 0.2091 4.91% Amr::init() 1 0.2032 0.2034 0.2035 4.77% Amr::initialInit() 1 0.1867 0.1871 0.1874 4.40% Castro::expand_state() 10 0.1463 0.1578 0.1735 4.07% FillPatchIterator::FillFromLevel0() 41 0.15 0.1591 0.164 3.85% FillPatchSingleLevel 41 0.1498 0.159 0.1638 3.84% Amr::InitializeInit() 1 0.06673 0.1084 0.1571 3.68% Amr::defBaseLevel() 1 0.06673 0.1084 0.157 3.68% Castro::initData() 1 0.05112 0.09177 0.1371 3.22% Castro::estTimeStep() 21 0.02893 0.08439 0.134 3.15% Castro::do_old_sources() 10 0.1274 0.1293 0.1308 3.07% FabArray::ParallelCopy() 41 0.1105 0.12 0.1266 2.97% Castro::clean_state() 62 0.1215 0.1233 0.1263 2.96% Amr::FinalizeInit() 1 0.03008 0.07865 0.1207 2.83% amrex::Copy() 193 0.0985 0.109 0.1186 2.78% FabArray::setVal() 143 0.08675 0.0936 0.09945 2.33% Castro::initialize_advance() 10 0.09175 0.09391 0.09677 2.27% Castro::computeInitialDt() 2 0.002284 0.05108 0.09286 2.18% Castro::do_new_sources() 10 0.06919 0.07575 0.08221 1.93% Amr::writePlotFile() 2 0.07865 0.07889 0.07924 1.86% Castro::computeTemp() 63 0.06986 0.07245 0.07532 1.77% FabArray::ParallelCopy_finish() 41 0.05122 0.0609 0.06788 1.59% FabArray::ParallelCopy_nowait() 41 0.0578 0.05895 0.06007 1.41% Castro::reset_internal_energy(MultiFab) 63 0.04956 0.05131 0.05312 1.25% Castro::reset_internal_energy(Fab) 1008 0.04925 0.05098 0.05277 1.24% Castro::normalize_species() 62 0.04256 0.04327 0.04409 1.03% StateDataPhysBCFunct::() 41 0.03668 0.03892 0.04148 0.97% StateData::FillBoundary(geom) 41 0.03656 0.03878 0.04133 0.97% Castro::construct_new_source() 50 0.03393 0.03762 0.04125 0.97% Castro::finalize_do_advance() 10 0.01779 0.02565 0.03372 0.79% Castro::construct_new_gravity_source() 10 0.02678 0.03001 0.03337 0.78% Gravity::interpolate_monopole_grav() 21 0.0271 0.029 0.03008 0.71% Castro::post_init() 1 0.02687 0.02719 0.02747 0.64% FabArray::setDomainBndry() 41 0.0157 0.01863 0.02285 0.54% VisMF::Write(FabArray) 2 0.01259 0.01429 0.02054 0.48% Castro::apply_source_to_state() 20 0.01662 0.01771 0.01932 0.45% FabArray::Saxpy() 20 0.01656 0.01765 0.01925 0.45% Castro::post_timestep() 10 0.01532 0.01592 0.01633 0.38% Castro::check_for_nan() 20 0.0123 0.01403 0.01628 0.38% MultiFab::contains_nan() 20 0.01227 0.014 0.01624 0.38% Castro::construct_old_source() 50 0.01414 0.01467 0.01509 0.35% Castro::construct_old_gravity_source() 10 0.01406 0.01456 0.01497 0.35% Castro::Castro() 1 0.01004 0.01034 0.01115 0.26% Castro::computeNewDt() 9 0.009236 0.009241 0.009248 0.22% AmrLevel::AmrLevel(dm) 1 0.005226 0.006085 0.009088 0.21% StateData::define() 4 0.005207 0.006067 0.00907 0.21% Castro::enforce_min_density() 62 0.00803 0.008271 0.008555 0.20% Castro::initMFs() 1 0.006246 0.006731 0.007732 0.18% Castro::finalize_advance() 10 0.003864 0.004524 0.00514 0.12% Castro::swap_state_time_levels() 10 0.003196 0.004445 0.00496 0.12% Castro::post_regrid() 1 0.001486 0.001642 0.001992 0.05% Castro::buildMetrics() 1 0.001609 0.0017 0.001976 0.05% Amr::InitAmr() 1 0.0002827 0.0003632 0.0005347 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.147e-05 0.0002013 0.0002852 0.01% DistributionMapping::LeastUsedCPUs() 1 5.885e-06 0.0001943 0.0002767 0.01% FabArrayBase::getCPC() 41 8.876e-05 0.0001053 0.0001169 0.00% Castro::enforce_consistent_e() 1 7.483e-05 8.472e-05 9.487e-05 0.00% Amr::writeSmallPlotFile() 1 3.149e-05 4.343e-05 5.616e-05 0.00% Castro::enforce_speed_limit() 62 3.052e-05 3.635e-05 4.452e-05 0.00% FabArrayBase::CPC::define() 2 2.079e-05 2.476e-05 2.887e-05 0.00% Amr::initSubcycle() 1 9.816e-06 1.239e-05 1.832e-05 0.00% Gravity::set_mass_offset() 10 8.228e-06 1.223e-05 1.633e-05 0.00% Gravity::swapTimeLevels() 10 9.032e-06 1.222e-05 1.537e-05 0.00% Castro::create_source_corrector() 10 9e-06 1.19e-05 1.485e-05 0.00% Castro::FluxRegCrseInit 10 7.018e-06 8.863e-06 1.171e-05 0.00% Castro::retry_advance_ctu() 10 6.509e-06 7.581e-06 1.084e-05 0.00% Castro::FluxRegFineAdd() 10 2.295e-06 2.787e-06 3.427e-06 0.00% DistributionMapping::Distribute() 1 1.048e-06 1.174e-06 1.328e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 24 B 28 B 35 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.12-5-gefd77ffab39c) finalized