Initializing AMReX (23.12-5-gefd77ffab39c)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.12-5-gefd77ffab39c) initialized Starting run at 06:21:37 UTC on 2023-12-06. Successfully read inputs file ... Castro git describe: 23.12-3-g8c346941c AMReX git describe: 23.12-5-gefd77ffab Microphysics git describe: 23.12 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014314993 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.359154094 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.385575581 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.323444011 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.32352058 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.330387007 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.363271372 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.308238332 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.305600427 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.305195469 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.304964789 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009897831 seconds Ending run at 06:21:40 UTC on 2023-12-06. Run time = 3.50877242 Run time without initialization = 3.324354085 Average number of zones advanced per microsecond: 0.789 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.508 ... 3.509 ... 3.509 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2902 2.3322 2.4119 68.74% Gravity::make_radial_gravity() 21 0.2868 0.3033 0.315 8.98% check_for_negative_density() 10 0.0302 0.1157 0.1586 4.52% Castro::initData() 1 0.04858 0.09332 0.121 3.45% FabArray::ParallelCopy_finish() 41 0.04054 0.05692 0.1002 2.86% Castro::estTimeStep() 21 0.0245 0.05478 0.09793 2.79% amrex::Copy() 193 0.06485 0.07852 0.09395 2.68% FabArray::setVal() 143 0.05338 0.06893 0.07988 2.28% Castro::reset_internal_energy(Fab) 1008 0.0439 0.04707 0.04988 1.42% Castro::normalize_species() 62 0.04103 0.04171 0.04291 1.22% FabArray::ParallelCopy_nowait() 41 0.03467 0.04056 0.04219 1.20% StateData::FillBoundary(geom) 41 0.02989 0.03233 0.03647 1.04% FillPatchIterator::Initialize 41 0.02683 0.03154 0.0341 0.97% Gravity::interpolate_monopole_grav() 21 0.02704 0.02888 0.02992 0.85% Castro::construct_new_gravity_source() 10 0.02199 0.02409 0.02626 0.75% Castro::computeTemp() 63 0.01674 0.01926 0.02055 0.59% Castro::initialize_do_advance() 10 0.01171 0.01671 0.02003 0.57% VisMF::Write(FabArray) 2 0.01263 0.01318 0.01547 0.44% Castro::initialize_advance() 10 0.003816 0.01075 0.01447 0.41% FabArray::Saxpy() 20 0.01049 0.01259 0.01398 0.40% MultiFab::contains_nan() 20 0.009847 0.01092 0.01329 0.38% FabArray::setDomainBndry() 41 0.006326 0.008986 0.01193 0.34% Castro::initMFs() 1 0.006055 0.007121 0.01028 0.29% Castro::construct_old_gravity_source() 10 0.006541 0.009405 0.0102 0.29% Amr::writePlotFile() 2 0.006257 0.008433 0.009053 0.26% StateData::define() 4 0.005036 0.005768 0.007807 0.22% Castro::enforce_min_density() 62 0.007014 0.007394 0.007733 0.22% Castro::construct_new_source() 50 0.005813 0.006251 0.006817 0.19% Castro::swap_state_time_levels() 10 0.003117 0.004105 0.004335 0.12% main() 1 0.003727 0.004094 0.004319 0.12% Gravity::get_new_grav_vector() 11 0.002852 0.003326 0.003916 0.11% Amr::coarseTimeStep() 10 0.001282 0.002002 0.002969 0.08% Castro::buildMetrics() 1 0.00144 0.001648 0.00227 0.06% Gravity::get_old_grav_vector() 10 0.001636 0.001929 0.002201 0.06% Castro::finalize_do_advance() 10 0.000409 0.001074 0.001378 0.04% AmrLevel::FillPatch() 41 0.0007053 0.000844 0.0009937 0.03% Amr::InitAmr() 1 0.0002595 0.0003485 0.0005106 0.01% Amr::timeStep() 10 0.0001378 0.0002054 0.0003807 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002758 0.0002985 0.0003295 0.01% DistributionMapping::LeastUsedCPUs() 1 6.716e-06 0.0001972 0.0002877 0.01% StateDataPhysBCFunct::() 41 0.0001013 0.0001437 0.0001843 0.01% Castro::clean_state() 62 0.0001372 0.0001564 0.0001803 0.01% Castro::do_advance_ctu() 10 0.000115 0.0001479 0.0001731 0.00% FillPatchIterator::FillFromLevel0() 41 0.000107 0.0001226 0.00014 0.00% Castro::enforce_consistent_e() 1 7.486e-05 0.0001008 0.0001345 0.00% Castro::finalize_advance() 10 7.417e-05 0.000104 0.0001291 0.00% Castro::do_old_sources() 10 6.322e-05 8.626e-05 0.0001096 0.00% FabArray::ParallelCopy() 41 7.275e-05 8.228e-05 9.371e-05 0.00% Castro::do_new_sources() 10 5.3e-05 6.485e-05 9.145e-05 0.00% Castro::construct_old_source() 50 4.533e-05 6.98e-05 8.587e-05 0.00% Castro::Castro() 1 6.029e-05 7.156e-05 8.531e-05 0.00% Castro::subcycle_advance_ctu() 10 3.669e-05 5.135e-05 8.52e-05 0.00% FillPatchSingleLevel 41 6.053e-05 6.986e-05 7.813e-05 0.00% Amr::FinalizeInit() 1 4.326e-06 1.391e-05 7.437e-05 0.00% Amr::writeSmallPlotFile() 1 3.138e-05 5.688e-05 7.282e-05 0.00% FabArrayBase::getCPC() 41 4.061e-05 5.231e-05 6.827e-05 0.00% Castro::advance() 10 3.773e-05 4.38e-05 5.519e-05 0.00% Castro::apply_source_to_state() 20 3.518e-05 4.615e-05 5.338e-05 0.00% Amr::defBaseLevel() 1 2.84e-05 3.656e-05 4.725e-05 0.00% Castro::post_init() 1 1.302e-05 2.081e-05 3.892e-05 0.00% Castro::enforce_speed_limit() 62 2.494e-05 2.922e-05 3.848e-05 0.00% Castro::construct_old_gravity() 10 3.158e-05 3.512e-05 3.769e-05 0.00% Castro::construct_new_gravity() 10 2.968e-05 3.268e-05 3.581e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.176e-05 2.043e-05 3.052e-05 0.00% FabArrayBase::CPC::define() 2 2.358e-05 2.706e-05 3.008e-05 0.00% Castro::expand_state() 10 1.845e-05 2.326e-05 2.657e-05 0.00% Castro::check_for_nan() 20 2.158e-05 2.332e-05 2.643e-05 0.00% Castro::post_timestep() 10 1.186e-05 1.426e-05 2.272e-05 0.00% Amr::initSubcycle() 1 9.92e-06 1.224e-05 1.884e-05 0.00% Gravity::set_mass_offset() 10 8.684e-06 1.036e-05 1.175e-05 0.00% Gravity::swapTimeLevels() 10 7.29e-06 8.989e-06 1.119e-05 0.00% Castro::computeNewDt() 9 8.023e-06 8.937e-06 1.102e-05 0.00% Castro::FluxRegCrseInit 10 7.33e-06 8.44e-06 9.622e-06 0.00% Castro::create_source_corrector() 10 7.111e-06 8.185e-06 9.165e-06 0.00% Castro::retry_advance_ctu() 10 5.963e-06 7.374e-06 8.062e-06 0.00% Castro::post_regrid() 1 1.903e-06 3.517e-06 7.463e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.855e-06 5.314e-06 6.89e-06 0.00% Castro::computeInitialDt() 2 2.67e-06 3.909e-06 4.878e-06 0.00% Amr::InitializeInit() 1 1.753e-06 2.601e-06 4.808e-06 0.00% Castro::FluxRegFineAdd() 10 1.971e-06 2.572e-06 3.743e-06 0.00% Amr::init() 1 2.041e-06 2.417e-06 2.734e-06 0.00% Amr::initialInit() 1 1.452e-06 1.943e-06 2.428e-06 0.00% DistributionMapping::Distribute() 1 9.68e-07 1.222e-06 1.849e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.508 3.509 3.509 100.00% Amr::coarseTimeStep() 10 3.31 3.31 3.31 94.34% Amr::timeStep() 10 3.297 3.298 3.298 94.00% Castro::advance() 10 3.281 3.282 3.282 93.54% Castro::subcycle_advance_ctu() 10 3.197 3.207 3.226 91.93% Castro::do_advance_ctu() 10 3.197 3.207 3.225 91.92% Castro::construct_ctu_hydro_source() 10 2.463 2.468 2.472 70.45% Gravity::make_radial_gravity() 21 0.3028 0.3194 0.3285 9.36% AmrLevel::FillPatch() 41 0.18 0.2024 0.2243 6.39% Gravity::get_new_grav_vector() 11 0.2067 0.2084 0.2102 5.99% Castro::construct_old_gravity() 10 0.1807 0.1935 0.2015 5.74% Gravity::get_old_grav_vector() 10 0.1797 0.1928 0.2009 5.72% FillPatchIterator::Initialize 41 0.1505 0.1708 0.2003 5.71% Castro::construct_new_gravity() 10 0.1824 0.1836 0.1849 5.27% Amr::init() 1 0.1837 0.1839 0.184 5.24% Castro::initialize_do_advance() 10 0.1619 0.17 0.1807 5.15% Amr::initialInit() 1 0.1694 0.1696 0.1698 4.84% FillPatchIterator::FillFromLevel0() 41 0.1154 0.1303 0.1672 4.76% FillPatchSingleLevel 41 0.1153 0.1302 0.1671 4.76% check_for_negative_density() 10 0.0302 0.1157 0.1586 4.52% Amr::InitializeInit() 1 0.06766 0.1147 0.1413 4.03% Amr::defBaseLevel() 1 0.06766 0.1147 0.1413 4.03% FabArray::ParallelCopy() 41 0.08282 0.09764 0.135 3.85% Castro::expand_state() 10 0.1041 0.1166 0.1329 3.79% Castro::initData() 1 0.05235 0.09757 0.1257 3.58% Castro::clean_state() 62 0.1083 0.1149 0.1192 3.40% Amr::FinalizeInit() 1 0.02848 0.05485 0.1017 2.90% FabArray::ParallelCopy_finish() 41 0.04054 0.05692 0.1002 2.86% Castro::estTimeStep() 21 0.0245 0.05478 0.09793 2.79% Castro::do_old_sources() 10 0.09139 0.09489 0.0969 2.76% amrex::Copy() 193 0.06485 0.07852 0.09395 2.68% Castro::initialize_advance() 10 0.05215 0.07111 0.08079 2.30% FabArray::setVal() 143 0.05338 0.06893 0.07988 2.28% Castro::computeInitialDt() 2 0.002259 0.02874 0.07579 2.16% Castro::computeTemp() 63 0.06093 0.06663 0.07074 2.02% Castro::do_new_sources() 10 0.05914 0.06288 0.06864 1.96% Castro::reset_internal_energy(MultiFab) 63 0.04419 0.04737 0.05019 1.43% Castro::reset_internal_energy(Fab) 1008 0.0439 0.04707 0.04988 1.42% Castro::normalize_species() 62 0.04103 0.04171 0.04291 1.22% FabArray::ParallelCopy_nowait() 41 0.03476 0.04064 0.04229 1.21% StateDataPhysBCFunct::() 41 0.03001 0.03247 0.03657 1.04% StateData::FillBoundary(geom) 41 0.02989 0.03233 0.03647 1.04% Castro::construct_new_source() 50 0.02781 0.03034 0.03307 0.94% Gravity::interpolate_monopole_grav() 21 0.02704 0.02888 0.02992 0.85% Castro::construct_new_gravity_source() 10 0.02199 0.02409 0.02626 0.75% Castro::post_init() 1 0.0255 0.02572 0.0259 0.74% Amr::writePlotFile() 2 0.02413 0.02428 0.02448 0.70% Castro::finalize_do_advance() 10 0.01203 0.01785 0.02154 0.61% Castro::post_timestep() 10 0.01479 0.01576 0.01644 0.47% VisMF::Write(FabArray) 2 0.01263 0.01318 0.01547 0.44% Castro::Castro() 1 0.01003 0.01114 0.01432 0.41% Castro::apply_source_to_state() 20 0.01053 0.01263 0.01403 0.40% FabArray::Saxpy() 20 0.01049 0.01259 0.01398 0.40% Castro::check_for_nan() 20 0.009871 0.01094 0.01331 0.38% MultiFab::contains_nan() 20 0.009847 0.01092 0.01329 0.38% FabArray::setDomainBndry() 41 0.006326 0.008986 0.01193 0.34% Castro::construct_old_source() 50 0.006587 0.009475 0.01028 0.29% Castro::initMFs() 1 0.006055 0.007121 0.01028 0.29% Castro::construct_old_gravity_source() 10 0.006541 0.009405 0.0102 0.29% Castro::computeNewDt() 9 0.009272 0.009276 0.009278 0.26% AmrLevel::AmrLevel(dm) 1 0.005052 0.005788 0.007838 0.22% StateData::define() 4 0.005036 0.005768 0.007807 0.22% Castro::enforce_min_density() 62 0.007014 0.007394 0.007733 0.22% Castro::swap_state_time_levels() 10 0.003117 0.004105 0.004335 0.12% Castro::finalize_advance() 10 0.003187 0.003361 0.003542 0.10% Castro::buildMetrics() 1 0.001557 0.001789 0.002468 0.07% Castro::post_regrid() 1 0.001521 0.001613 0.001983 0.06% Amr::InitAmr() 1 0.0002702 0.0003607 0.0005285 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.221e-05 0.0002037 0.0002953 0.01% DistributionMapping::LeastUsedCPUs() 1 6.716e-06 0.0001972 0.0002877 0.01% Castro::enforce_consistent_e() 1 7.486e-05 0.0001008 0.0001345 0.00% FabArrayBase::getCPC() 41 6.419e-05 7.937e-05 9.748e-05 0.00% Amr::writeSmallPlotFile() 1 3.138e-05 5.688e-05 7.282e-05 0.00% Castro::enforce_speed_limit() 62 2.494e-05 2.922e-05 3.848e-05 0.00% FabArrayBase::CPC::define() 2 2.358e-05 2.706e-05 3.008e-05 0.00% Amr::initSubcycle() 1 9.92e-06 1.224e-05 1.884e-05 0.00% Gravity::set_mass_offset() 10 8.684e-06 1.036e-05 1.175e-05 0.00% Gravity::swapTimeLevels() 10 7.29e-06 8.989e-06 1.119e-05 0.00% Castro::FluxRegCrseInit 10 7.33e-06 8.44e-06 9.622e-06 0.00% Castro::create_source_corrector() 10 7.111e-06 8.185e-06 9.165e-06 0.00% Castro::retry_advance_ctu() 10 5.963e-06 7.374e-06 8.062e-06 0.00% Castro::FluxRegFineAdd() 10 1.971e-06 2.572e-06 3.743e-06 0.00% DistributionMapping::Distribute() 1 9.68e-07 1.222e-06 1.849e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 37 B 49 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.12-5-gefd77ffab39c) finalized