Initializing AMReX (23.12-6-gedb4c25027ef)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.12-6-gedb4c25027ef) initialized Starting run at 06:21:23 UTC on 2023-12-07. Successfully read inputs file ... Castro git describe: 23.12-3-g8c346941c AMReX git describe: 23.12-6-gedb4c2502 Microphysics git describe: 23.12 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01417152 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.371367783 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.395374987 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.402144875 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.40421553 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.431590434 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.405864417 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.408096455 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.407140198 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.404832754 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.428646668 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.015640354 seconds Ending run at 06:21:28 UTC on 2023-12-07. Run time = 4.272543625 Run time without initialization = 4.083511356 Average number of zones advanced per microsecond: 0.642 Average number of zones advanced per microsecond per rank: 0.080 TinyProfiler total time across processes [min...avg...max]: 4.27 ... 4.272 ... 4.273 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.4929 2.7290 3.0150 70.57% check_for_negative_density() 10 0.004347 0.2968 0.5384 12.60% Gravity::make_radial_gravity() 21 0.2957 0.314 0.3349 7.84% Castro::initData() 1 0.04718 0.08514 0.1256 2.94% amrex::Copy() 193 0.09663 0.1083 0.1215 2.84% Castro::estTimeStep() 21 0.02342 0.07312 0.1188 2.78% FabArray::setVal() 143 0.08587 0.09316 0.1017 2.38% FabArray::ParallelCopy_finish() 41 0.05076 0.0592 0.06793 1.59% FabArray::ParallelCopy_nowait() 41 0.05484 0.05899 0.06163 1.44% FillPatchIterator::Initialize 41 0.04764 0.05249 0.05772 1.35% Castro::reset_internal_energy(Fab) 1008 0.04835 0.05112 0.05309 1.24% StateData::FillBoundary(geom) 41 0.03322 0.03953 0.04711 1.10% Castro::normalize_species() 62 0.04243 0.04309 0.04402 1.03% Castro::construct_new_gravity_source() 10 0.02648 0.0297 0.03266 0.76% Gravity::interpolate_monopole_grav() 21 0.02722 0.02912 0.03025 0.71% Castro::initialize_do_advance() 10 0.02261 0.02473 0.02639 0.62% Castro::computeTemp() 63 0.02003 0.02124 0.0223 0.52% FabArray::setDomainBndry() 41 0.01632 0.01807 0.01997 0.47% FabArray::Saxpy() 20 0.01663 0.01811 0.01932 0.45% VisMF::Write(FabArray) 2 0.01204 0.01339 0.01832 0.43% Castro::initialize_advance() 10 0.01342 0.01488 0.01637 0.38% MultiFab::contains_nan() 20 0.01185 0.01377 0.01532 0.36% Castro::construct_old_gravity_source() 10 0.01405 0.01472 0.01507 0.35% Amr::writePlotFile() 2 0.008467 0.01303 0.01506 0.35% Castro::enforce_min_density() 62 0.00783 0.008247 0.008619 0.20% Castro::construct_new_source() 50 0.007181 0.007777 0.008313 0.19% Castro::initMFs() 1 0.006279 0.006733 0.008041 0.19% main() 1 0.005454 0.007301 0.007819 0.18% Castro::swap_state_time_levels() 10 0.003273 0.00465 0.006956 0.16% Gravity::get_new_grav_vector() 11 0.003423 0.004916 0.005974 0.14% StateData::define() 4 0.005184 0.005384 0.005894 0.14% Gravity::get_old_grav_vector() 10 0.002657 0.002904 0.003422 0.08% Amr::coarseTimeStep() 10 0.0008941 0.001871 0.002881 0.07% Castro::finalize_do_advance() 10 0.001173 0.001585 0.001925 0.05% Castro::buildMetrics() 1 0.001455 0.001533 0.001714 0.04% AmrLevel::FillPatch() 41 0.001024 0.001111 0.001236 0.03% Amr::timeStep() 10 0.0001953 0.0002617 0.0005637 0.01% Amr::InitAmr() 1 0.0002753 0.0003028 0.0004156 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003156 0.0003331 0.0003595 0.01% Castro::do_advance_ctu() 10 0.0001771 0.0002004 0.0002536 0.01% Castro::clean_state() 62 0.0001781 0.0001922 0.0002316 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001453 0.0001764 0.0002074 0.00% StateDataPhysBCFunct::() 41 0.0001249 0.0001391 0.0001502 0.00% Castro::finalize_advance() 10 9.461e-05 0.0001228 0.0001419 0.00% Castro::construct_old_source() 50 9.353e-05 0.0001146 0.000141 0.00% Castro::do_old_sources() 10 0.0001151 0.000131 0.0001385 0.00% FabArray::ParallelCopy() 41 0.0001051 0.0001179 0.0001363 0.00% DistributionMapping::LeastUsedCPUs() 1 7.442e-06 0.0001076 0.000127 0.00% FillPatchSingleLevel 41 8.493e-05 9.582e-05 0.0001104 0.00% Castro::enforce_consistent_e() 1 7.405e-05 8.938e-05 0.0001101 0.00% Amr::FinalizeInit() 1 3.758e-06 1.66e-05 0.0001003 0.00% Castro::Castro() 1 5.522e-05 8.036e-05 9.887e-05 0.00% Castro::do_new_sources() 10 7.906e-05 8.702e-05 9.766e-05 0.00% FabArrayBase::getCPC() 41 7.778e-05 8.313e-05 9.133e-05 0.00% Castro::apply_source_to_state() 20 6.375e-05 7.229e-05 8.308e-05 0.00% Castro::subcycle_advance_ctu() 10 6.008e-05 7.124e-05 7.922e-05 0.00% Castro::advance() 10 4.724e-05 5.361e-05 5.961e-05 0.00% Castro::construct_new_gravity() 10 3.405e-05 4.48e-05 5.798e-05 0.00% Amr::writeSmallPlotFile() 1 3.014e-05 4.447e-05 5.493e-05 0.00% Castro::construct_old_gravity() 10 4.188e-05 4.745e-05 5.362e-05 0.00% Castro::expand_state() 10 3.209e-05 3.96e-05 4.548e-05 0.00% Castro::enforce_speed_limit() 62 3.123e-05 3.604e-05 4.313e-05 0.00% Amr::defBaseLevel() 1 2.444e-05 3.219e-05 4.153e-05 0.00% FabArrayBase::CPC::define() 2 2.188e-05 2.801e-05 3.725e-05 0.00% Castro::check_for_nan() 20 2.667e-05 2.829e-05 3.18e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.688e-05 1.949e-05 2.326e-05 0.00% Castro::post_timestep() 10 1.342e-05 1.7e-05 2.105e-05 0.00% Castro::post_init() 1 1.301e-05 1.581e-05 1.991e-05 0.00% Gravity::swapTimeLevels() 10 1.135e-05 1.396e-05 1.73e-05 0.00% Gravity::set_mass_offset() 10 7.754e-06 1.164e-05 1.606e-05 0.00% Castro::create_source_corrector() 10 8.362e-06 1.184e-05 1.417e-05 0.00% Castro::FluxRegCrseInit 10 5.488e-06 8.973e-06 1.191e-05 0.00% Amr::initSubcycle() 1 9.742e-06 1.048e-05 1.159e-05 0.00% Castro::computeNewDt() 9 7.366e-06 8.619e-06 1.089e-05 0.00% Castro::retry_advance_ctu() 10 6.103e-06 7.698e-06 1.059e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.67e-06 4.969e-06 6.816e-06 0.00% Amr::InitializeInit() 1 1.734e-06 2.888e-06 6.044e-06 0.00% Castro::FluxRegFineAdd() 10 2.101e-06 2.711e-06 3.869e-06 0.00% Amr::init() 1 1.912e-06 2.382e-06 3.845e-06 0.00% Castro::computeInitialDt() 2 2.825e-06 3.413e-06 3.754e-06 0.00% Castro::post_regrid() 1 2.083e-06 2.683e-06 3.493e-06 0.00% Amr::initialInit() 1 1.407e-06 1.596e-06 2.028e-06 0.00% DistributionMapping::Distribute() 1 1.018e-06 1.173e-06 1.438e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 4.27 4.272 4.273 100.00% Amr::coarseTimeStep() 10 4.06 4.06 4.06 95.03% Amr::timeStep() 10 4.047 4.048 4.049 94.76% Castro::advance() 10 4.031 4.031 4.032 94.37% Castro::subcycle_advance_ctu() 10 3.93 3.934 3.939 92.19% Castro::do_advance_ctu() 10 3.93 3.934 3.939 92.18% Castro::construct_ctu_hydro_source() 10 3.042 3.048 3.053 71.45% check_for_negative_density() 10 0.004347 0.2968 0.5384 12.60% Gravity::make_radial_gravity() 21 0.3177 0.3381 0.3609 8.45% AmrLevel::FillPatch() 41 0.2535 0.2731 0.2871 6.72% FillPatchIterator::Initialize 41 0.2154 0.2289 0.2381 5.57% Castro::initialize_do_advance() 10 0.2084 0.2237 0.2372 5.55% Castro::construct_old_gravity() 10 0.1955 0.2117 0.2288 5.35% Gravity::get_old_grav_vector() 10 0.1946 0.2109 0.2281 5.34% Gravity::get_new_grav_vector() 11 0.2257 0.2265 0.2272 5.32% Castro::construct_new_gravity() 10 0.2024 0.2037 0.2044 4.78% Amr::init() 1 0.1885 0.1886 0.1886 4.41% Amr::initialInit() 1 0.174 0.1742 0.1743 4.08% Castro::expand_state() 10 0.1389 0.1546 0.1684 3.94% FillPatchIterator::FillFromLevel0() 41 0.1511 0.1584 0.1637 3.83% FillPatchSingleLevel 41 0.1509 0.1582 0.1635 3.83% Amr::InitializeInit() 1 0.06716 0.1054 0.1469 3.44% Amr::defBaseLevel() 1 0.06715 0.1054 0.1469 3.44% Castro::do_old_sources() 10 0.1286 0.1299 0.1315 3.08% Castro::initData() 1 0.05113 0.08908 0.1293 3.03% FabArray::ParallelCopy() 41 0.111 0.1184 0.1274 2.98% Castro::clean_state() 62 0.1208 0.1234 0.1258 2.94% amrex::Copy() 193 0.09663 0.1083 0.1215 2.84% Castro::estTimeStep() 21 0.02342 0.07312 0.1188 2.78% Amr::FinalizeInit() 1 0.02736 0.06877 0.1071 2.51% FabArray::setVal() 143 0.08587 0.09316 0.1017 2.38% Castro::initialize_advance() 10 0.08834 0.09298 0.09718 2.27% Castro::do_new_sources() 10 0.06938 0.07599 0.08332 1.95% Castro::computeInitialDt() 2 0.002741 0.04431 0.08256 1.93% Castro::computeTemp() 63 0.06911 0.07269 0.07517 1.76% FabArray::ParallelCopy_finish() 41 0.05076 0.0592 0.06793 1.59% FabArray::ParallelCopy_nowait() 41 0.05495 0.0591 0.06173 1.44% Castro::reset_internal_energy(MultiFab) 63 0.04867 0.05145 0.05342 1.25% Castro::reset_internal_energy(Fab) 1008 0.04835 0.05112 0.05309 1.24% StateDataPhysBCFunct::() 41 0.03334 0.03967 0.04725 1.11% StateData::FillBoundary(geom) 41 0.03322 0.03953 0.04711 1.10% Castro::normalize_species() 62 0.04243 0.04309 0.04402 1.03% Castro::construct_new_source() 50 0.03388 0.03748 0.04086 0.96% Castro::construct_new_gravity_source() 10 0.02648 0.0297 0.03266 0.76% Amr::writePlotFile() 2 0.02999 0.03014 0.03036 0.71% Gravity::interpolate_monopole_grav() 21 0.02722 0.02912 0.03025 0.71% Castro::finalize_do_advance() 10 0.0127 0.02108 0.02959 0.69% Castro::post_init() 1 0.02382 0.02401 0.02415 0.57% FabArray::setDomainBndry() 41 0.01632 0.01807 0.01997 0.47% Castro::apply_source_to_state() 20 0.01669 0.01818 0.01941 0.45% FabArray::Saxpy() 20 0.01663 0.01811 0.01932 0.45% VisMF::Write(FabArray) 2 0.01204 0.01339 0.01832 0.43% Castro::post_timestep() 10 0.01591 0.01609 0.0164 0.38% Castro::check_for_nan() 20 0.01188 0.0138 0.01535 0.36% MultiFab::contains_nan() 20 0.01185 0.01377 0.01532 0.36% Castro::construct_old_source() 50 0.01414 0.01483 0.01518 0.36% Castro::construct_old_gravity_source() 10 0.01405 0.01472 0.01507 0.35% Castro::Castro() 1 0.01041 0.01075 0.01163 0.27% Castro::computeNewDt() 9 0.009313 0.009325 0.009338 0.22% Castro::enforce_min_density() 62 0.00783 0.008247 0.008619 0.20% Castro::initMFs() 1 0.006279 0.006733 0.008041 0.19% Castro::swap_state_time_levels() 10 0.003273 0.00465 0.006956 0.16% AmrLevel::AmrLevel(dm) 1 0.005204 0.005404 0.005916 0.14% StateData::define() 4 0.005184 0.005384 0.005894 0.14% Castro::finalize_advance() 10 0.003947 0.004439 0.004939 0.12% Castro::buildMetrics() 1 0.001578 0.001665 0.001875 0.04% Castro::post_regrid() 1 0.001496 0.001569 0.001665 0.04% Amr::InitAmr() 1 0.0002858 0.0003133 0.0004257 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.237e-05 0.0001137 0.0001351 0.00% DistributionMapping::LeastUsedCPUs() 1 7.442e-06 0.0001076 0.000127 0.00% FabArrayBase::getCPC() 41 9.965e-05 0.0001111 0.0001245 0.00% Castro::enforce_consistent_e() 1 7.405e-05 8.938e-05 0.0001101 0.00% Amr::writeSmallPlotFile() 1 3.014e-05 4.447e-05 5.493e-05 0.00% Castro::enforce_speed_limit() 62 3.123e-05 3.604e-05 4.313e-05 0.00% FabArrayBase::CPC::define() 2 2.188e-05 2.801e-05 3.725e-05 0.00% Gravity::swapTimeLevels() 10 1.135e-05 1.396e-05 1.73e-05 0.00% Gravity::set_mass_offset() 10 7.754e-06 1.164e-05 1.606e-05 0.00% Castro::create_source_corrector() 10 8.362e-06 1.184e-05 1.417e-05 0.00% Castro::FluxRegCrseInit 10 5.488e-06 8.973e-06 1.191e-05 0.00% Amr::initSubcycle() 1 9.742e-06 1.048e-05 1.159e-05 0.00% Castro::retry_advance_ctu() 10 6.103e-06 7.698e-06 1.059e-05 0.00% Castro::FluxRegFineAdd() 10 2.101e-06 2.711e-06 3.869e-06 0.00% DistributionMapping::Distribute() 1 1.018e-06 1.173e-06 1.438e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 24 B 26 B 30 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.12-6-gedb4c25027ef) finalized