Initializing AMReX (23.12-6-gedb4c25027ef)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.12-6-gedb4c25027ef) initialized Starting run at 06:20:29 UTC on 2023-12-08. Successfully read inputs file ... Castro git describe: 23.12-3-g8c346941c AMReX git describe: 23.12-6-gedb4c2502 Microphysics git describe: 23.12 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.012970209 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.359295126 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.333956798 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.330752197 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.326533254 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.325886116 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.358933806 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.319115299 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.309764166 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.310256307 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.310523192 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007290128 seconds Ending run at 06:20:32 UTC on 2023-12-08. Run time = 3.690559934 Run time without initialization = 3.494973903 Average number of zones advanced per microsecond: 0.750 Average number of zones advanced per microsecond per rank: 0.094 TinyProfiler total time across processes [min...avg...max]: 3.69 ... 3.69 ... 3.691 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3211 2.3499 2.3814 64.53% Gravity::make_radial_gravity() 21 0.2939 0.3028 0.317 8.59% Amr::writePlotFile() 2 0.2039 0.2062 0.207 5.61% Castro::initData() 1 0.04743 0.08732 0.1313 3.56% Castro::estTimeStep() 21 0.03066 0.07317 0.117 3.17% amrex::Copy() 193 0.06561 0.08161 0.09708 2.63% FabArray::ParallelCopy_finish() 41 0.03873 0.06017 0.09657 2.62% check_for_negative_density() 10 0.02663 0.06165 0.09394 2.55% FabArray::setVal() 143 0.0632 0.0721 0.08005 2.17% Castro::reset_internal_energy(Fab) 1008 0.04519 0.04723 0.04923 1.33% Castro::normalize_species() 62 0.04104 0.04222 0.04388 1.19% FabArray::ParallelCopy_nowait() 41 0.03458 0.04027 0.0414 1.12% StateData::FillBoundary(geom) 41 0.03013 0.03273 0.03735 1.01% FillPatchIterator::Initialize 41 0.02705 0.03197 0.0355 0.96% Gravity::interpolate_monopole_grav() 21 0.02755 0.02962 0.032 0.87% Castro::construct_new_gravity_source() 10 0.0216 0.02401 0.02655 0.72% Castro::computeTemp() 63 0.01833 0.01958 0.02071 0.56% Castro::initialize_do_advance() 10 0.01182 0.01691 0.01808 0.49% Castro::initialize_advance() 10 0.008816 0.01212 0.01549 0.42% FabArray::Saxpy() 20 0.01035 0.01245 0.01359 0.37% FabArray::setDomainBndry() 41 0.006903 0.009857 0.01279 0.35% MultiFab::contains_nan() 20 0.01001 0.01086 0.01221 0.33% VisMF::Write(FabArray) 2 0.008724 0.009245 0.01158 0.31% Castro::construct_old_gravity_source() 10 0.006618 0.009461 0.01031 0.28% Castro::enforce_min_density() 62 0.007004 0.007385 0.00784 0.21% Castro::initMFs() 1 0.006175 0.006599 0.007801 0.21% Castro::construct_new_source() 50 0.005834 0.006328 0.006789 0.18% StateData::define() 4 0.005086 0.005285 0.0058 0.16% Castro::swap_state_time_levels() 10 0.003117 0.004101 0.00445 0.12% main() 1 0.003359 0.003726 0.004018 0.11% Gravity::get_new_grav_vector() 11 0.002825 0.003446 0.00387 0.10% Gravity::get_old_grav_vector() 10 0.001497 0.002016 0.002372 0.06% Amr::coarseTimeStep() 10 0.0009776 0.001821 0.00219 0.06% Castro::buildMetrics() 1 0.001475 0.001537 0.001685 0.05% Castro::finalize_do_advance() 10 0.0003847 0.001021 0.001277 0.03% AmrLevel::FillPatch() 41 0.0007423 0.0008013 0.0008956 0.02% Amr::InitAmr() 1 0.0002659 0.000298 0.0004686 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002874 0.0002972 0.0003416 0.01% Amr::timeStep() 10 0.0001419 0.0001958 0.0003346 0.01% DistributionMapping::LeastUsedCPUs() 1 7.745e-06 0.0001835 0.0002119 0.01% Castro::clean_state() 62 0.0001438 0.0001627 0.0001995 0.01% StateDataPhysBCFunct::() 41 9.799e-05 0.0001369 0.0001825 0.00% Castro::do_advance_ctu() 10 0.0001381 0.0001513 0.0001709 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001186 0.0001288 0.0001567 0.00% Castro::finalize_advance() 10 7.305e-05 0.0001025 0.0001317 0.00% Castro::do_old_sources() 10 7.413e-05 9.103e-05 0.0001054 0.00% Castro::construct_old_source() 50 5.411e-05 7.227e-05 9.277e-05 0.00% Castro::enforce_consistent_e() 1 7.6e-05 8.533e-05 9.194e-05 0.00% FabArray::ParallelCopy() 41 7.836e-05 8.531e-05 9.046e-05 0.00% Castro::Castro() 1 5.439e-05 7.008e-05 8.339e-05 0.00% FillPatchSingleLevel 41 6.591e-05 7.257e-05 8.081e-05 0.00% Amr::writeSmallPlotFile() 1 4.241e-05 5.186e-05 7.394e-05 0.00% Castro::do_new_sources() 10 5.348e-05 6.267e-05 6.97e-05 0.00% FabArrayBase::getCPC() 41 4.106e-05 5.484e-05 6.841e-05 0.00% Amr::FinalizeInit() 1 3.779e-06 1.251e-05 6.83e-05 0.00% Castro::subcycle_advance_ctu() 10 3.906e-05 5.068e-05 6.256e-05 0.00% Castro::apply_source_to_state() 20 3.837e-05 4.804e-05 5.934e-05 0.00% Amr::defBaseLevel() 1 2.522e-05 4.131e-05 5.891e-05 0.00% Castro::advance() 10 3.684e-05 4.219e-05 4.93e-05 0.00% Castro::construct_old_gravity() 10 3.26e-05 3.502e-05 3.809e-05 0.00% Castro::construct_new_gravity() 10 2.873e-05 3.332e-05 3.771e-05 0.00% Castro::enforce_speed_limit() 62 2.429e-05 2.811e-05 3.323e-05 0.00% FabArrayBase::CPC::define() 2 2.352e-05 2.642e-05 3.137e-05 0.00% Castro::expand_state() 10 2.277e-05 2.547e-05 3.119e-05 0.00% Castro::check_for_nan() 20 2.118e-05 2.388e-05 2.669e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.429e-05 1.907e-05 2.501e-05 0.00% Castro::post_init() 1 1.312e-05 1.419e-05 1.558e-05 0.00% Castro::post_timestep() 10 1.272e-05 1.413e-05 1.479e-05 0.00% Gravity::swapTimeLevels() 10 6.524e-06 1.005e-05 1.239e-05 0.00% Amr::initSubcycle() 1 9.77e-06 1.053e-05 1.168e-05 0.00% Gravity::set_mass_offset() 10 8.51e-06 9.618e-06 1.125e-05 0.00% Castro::create_source_corrector() 10 6.849e-06 8.799e-06 9.943e-06 0.00% Castro::FluxRegCrseInit 10 6.085e-06 8.008e-06 9.263e-06 0.00% Castro::computeNewDt() 9 7.01e-06 7.813e-06 8.664e-06 0.00% Castro::retry_advance_ctu() 10 6.335e-06 6.968e-06 8.644e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.018e-06 5.365e-06 6.268e-06 0.00% Amr::InitializeInit() 1 1.777e-06 2.512e-06 5.123e-06 0.00% Castro::post_regrid() 1 1.966e-06 3.036e-06 4.14e-06 0.00% Castro::computeInitialDt() 2 3.269e-06 3.578e-06 4.034e-06 0.00% Amr::initialInit() 1 1.312e-06 1.774e-06 3.233e-06 0.00% Castro::FluxRegFineAdd() 10 1.985e-06 2.33e-06 2.658e-06 0.00% Amr::init() 1 1.734e-06 2.141e-06 2.534e-06 0.00% DistributionMapping::Distribute() 1 1.083e-06 1.292e-06 1.44e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.69 3.69 3.691 100.00% Amr::coarseTimeStep() 10 3.286 3.286 3.286 89.03% Amr::timeStep() 10 3.273 3.273 3.274 88.72% Castro::advance() 10 3.257 3.257 3.258 88.27% Castro::subcycle_advance_ctu() 10 3.174 3.179 3.188 86.37% Castro::do_advance_ctu() 10 3.174 3.179 3.188 86.37% Castro::construct_ctu_hydro_source() 10 2.425 2.432 2.435 65.98% Gravity::make_radial_gravity() 21 0.3104 0.3195 0.3313 8.98% AmrLevel::FillPatch() 41 0.1894 0.2072 0.2216 6.01% Amr::writePlotFile() 2 0.218 0.2183 0.2186 5.92% Gravity::get_new_grav_vector() 11 0.2085 0.2103 0.2114 5.73% Castro::construct_old_gravity() 10 0.1915 0.1977 0.2079 5.63% Gravity::get_old_grav_vector() 10 0.1908 0.197 0.2073 5.62% FillPatchIterator::Initialize 41 0.1562 0.1755 0.1977 5.36% Amr::init() 1 0.195 0.1951 0.1952 5.29% Castro::construct_new_gravity() 10 0.1832 0.1843 0.1851 5.01% Amr::initialInit() 1 0.1818 0.1821 0.1825 4.94% Castro::initialize_do_advance() 10 0.1592 0.1642 0.1672 4.53% FillPatchIterator::FillFromLevel0() 41 0.1179 0.1337 0.1637 4.44% FillPatchSingleLevel 41 0.1178 0.1335 0.1636 4.43% Amr::InitializeInit() 1 0.06717 0.1074 0.1523 4.13% Amr::defBaseLevel() 1 0.06716 0.1074 0.1523 4.13% Castro::initData() 1 0.05144 0.09129 0.1349 3.65% FabArray::ParallelCopy() 41 0.08023 0.1006 0.1313 3.56% Castro::clean_state() 62 0.113 0.116 0.1195 3.24% Castro::estTimeStep() 21 0.03066 0.07317 0.117 3.17% Amr::FinalizeInit() 1 0.02947 0.07471 0.1152 3.12% Castro::expand_state() 10 0.1047 0.1097 0.114 3.09% Castro::do_old_sources() 10 0.09142 0.1016 0.109 2.95% amrex::Copy() 193 0.06561 0.08161 0.09708 2.63% FabArray::ParallelCopy_finish() 41 0.03873 0.06017 0.09657 2.62% check_for_negative_density() 10 0.02663 0.06165 0.09394 2.55% Castro::computeInitialDt() 2 0.002345 0.04727 0.08756 2.37% FabArray::setVal() 143 0.0632 0.0721 0.08005 2.17% Castro::initialize_advance() 10 0.06561 0.07473 0.07936 2.15% Castro::computeTemp() 63 0.06404 0.0671 0.07023 1.90% Castro::do_new_sources() 10 0.05952 0.06317 0.06841 1.85% Castro::reset_internal_energy(MultiFab) 63 0.04548 0.04753 0.04952 1.34% Castro::reset_internal_energy(Fab) 1008 0.04519 0.04723 0.04923 1.33% Castro::normalize_species() 62 0.04104 0.04222 0.04388 1.19% FabArray::ParallelCopy_nowait() 41 0.03464 0.04035 0.04147 1.12% StateDataPhysBCFunct::() 41 0.03029 0.03287 0.03747 1.02% StateData::FillBoundary(geom) 41 0.03013 0.03273 0.03735 1.01% Castro::construct_new_source() 50 0.02743 0.03034 0.03334 0.90% Gravity::interpolate_monopole_grav() 21 0.02755 0.02962 0.032 0.87% Castro::post_init() 1 0.02681 0.02712 0.02737 0.74% Castro::construct_new_gravity_source() 10 0.0216 0.02401 0.02655 0.72% Castro::finalize_do_advance() 10 0.0122 0.01763 0.02109 0.57% Castro::post_timestep() 10 0.01541 0.01584 0.01634 0.44% Castro::apply_source_to_state() 20 0.01039 0.0125 0.01363 0.37% FabArray::Saxpy() 20 0.01035 0.01245 0.01359 0.37% FabArray::setDomainBndry() 41 0.006903 0.009857 0.01279 0.35% Castro::check_for_nan() 20 0.01003 0.01088 0.01223 0.33% MultiFab::contains_nan() 20 0.01001 0.01086 0.01221 0.33% VisMF::Write(FabArray) 2 0.008724 0.009245 0.01158 0.31% Castro::Castro() 1 0.01026 0.0106 0.01144 0.31% Castro::construct_old_source() 50 0.006672 0.009533 0.0104 0.28% Castro::construct_old_gravity_source() 10 0.006618 0.009461 0.01031 0.28% Castro::computeNewDt() 9 0.009286 0.009307 0.009323 0.25% Castro::enforce_min_density() 62 0.007004 0.007385 0.00784 0.21% Castro::initMFs() 1 0.006175 0.006599 0.007801 0.21% AmrLevel::AmrLevel(dm) 1 0.005103 0.005305 0.005821 0.16% StateData::define() 4 0.005086 0.005285 0.0058 0.16% Castro::swap_state_time_levels() 10 0.003117 0.004101 0.00445 0.12% Castro::finalize_advance() 10 0.00315 0.003384 0.003643 0.10% Castro::buildMetrics() 1 0.001617 0.00168 0.001845 0.05% Castro::post_regrid() 1 0.001535 0.001612 0.001675 0.05% Amr::InitAmr() 1 0.0002763 0.0003086 0.0004803 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.31e-05 0.0001901 0.0002188 0.01% DistributionMapping::LeastUsedCPUs() 1 7.745e-06 0.0001835 0.0002119 0.01% FabArrayBase::getCPC() 41 6.855e-05 8.126e-05 9.849e-05 0.00% Castro::enforce_consistent_e() 1 7.6e-05 8.533e-05 9.194e-05 0.00% Amr::writeSmallPlotFile() 1 4.241e-05 5.186e-05 7.394e-05 0.00% Castro::enforce_speed_limit() 62 2.429e-05 2.811e-05 3.323e-05 0.00% FabArrayBase::CPC::define() 2 2.352e-05 2.642e-05 3.137e-05 0.00% Gravity::swapTimeLevels() 10 6.524e-06 1.005e-05 1.239e-05 0.00% Amr::initSubcycle() 1 9.77e-06 1.053e-05 1.168e-05 0.00% Gravity::set_mass_offset() 10 8.51e-06 9.618e-06 1.125e-05 0.00% Castro::create_source_corrector() 10 6.849e-06 8.799e-06 9.943e-06 0.00% Castro::FluxRegCrseInit 10 6.085e-06 8.008e-06 9.263e-06 0.00% Castro::retry_advance_ctu() 10 6.335e-06 6.968e-06 8.644e-06 0.00% Castro::FluxRegFineAdd() 10 1.985e-06 2.33e-06 2.658e-06 0.00% DistributionMapping::Distribute() 1 1.083e-06 1.292e-06 1.44e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 27 B 31 B 37 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.12-6-gedb4c25027ef) finalized