Initializing AMReX (23.12-9-gd884f44493c0)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.12-9-gd884f44493c0) initialized Starting run at 01:18:55 UTC on 2023-12-12. Successfully read inputs file ... Castro git describe: 23.12-10-gd8597cd56 AMReX git describe: 23.12-9-gd884f4449 Microphysics git describe: 23.12-1-gbdf6a18e reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.012855603 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.355552651 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.348269735 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.324704118 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.323149029 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.324714182 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.366904568 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.311699911 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.307123857 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.308792838 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.309023538 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007291471 seconds Ending run at 01:18:58 UTC on 2023-12-12. Run time = 3.512388655 Run time without initialization = 3.292157076 Average number of zones advanced per microsecond: 0.796 Average number of zones advanced per microsecond per rank: 0.100 TinyProfiler total time across processes [min...avg...max]: 3.512 ... 3.512 ... 3.512 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3011 2.3389 2.3775 67.69% Gravity::make_radial_gravity() 21 0.2943 0.3125 0.3296 9.38% Castro::initData() 1 0.0537 0.09447 0.1523 4.34% Castro::estTimeStep() 21 0.03174 0.09203 0.1307 3.72% check_for_negative_density() 10 0.03031 0.07197 0.1115 3.17% amrex::Copy() 193 0.06415 0.07919 0.09677 2.76% FabArray::ParallelCopy_finish() 41 0.03768 0.05182 0.09508 2.71% FabArray::setVal() 143 0.0548 0.06821 0.07564 2.15% Castro::reset_internal_energy(Fab) 1008 0.04432 0.04806 0.05096 1.45% Castro::normalize_species() 62 0.04108 0.04223 0.04536 1.29% FabArray::ParallelCopy_nowait() 41 0.03403 0.04035 0.04272 1.22% StateData::FillBoundary(geom) 41 0.02984 0.03236 0.03478 0.99% FillPatchIterator::Initialize 41 0.02662 0.03145 0.03444 0.98% Gravity::interpolate_monopole_grav() 21 0.02766 0.0292 0.03027 0.86% Castro::construct_new_gravity_source() 10 0.02188 0.02431 0.0277 0.79% Castro::computeTemp() 63 0.0178 0.01961 0.02066 0.59% Castro::initialize_do_advance() 10 0.01162 0.01632 0.01775 0.51% Castro::initialize_advance() 10 0.0038 0.01072 0.01442 0.41% MultiFab::contains_nan() 20 0.009584 0.01144 0.01407 0.40% FabArray::Saxpy() 20 0.01056 0.01255 0.01379 0.39% VisMF::Write(FabArray) 2 0.008847 0.009315 0.01147 0.33% FabArray::setDomainBndry() 41 0.006242 0.009145 0.01066 0.30% Castro::construct_old_gravity_source() 10 0.006584 0.009315 0.01001 0.28% Castro::initMFs() 1 0.006344 0.007598 0.00993 0.28% Amr::writePlotFile() 2 0.006152 0.00815 0.008719 0.25% StateData::define() 4 0.005267 0.006205 0.007998 0.23% Castro::construct_new_source() 50 0.005662 0.006344 0.006831 0.19% Castro::enforce_min_density() 62 0.005579 0.005985 0.006313 0.18% Castro::swap_state_time_levels() 10 0.003157 0.004146 0.0044 0.13% main() 1 0.004 0.004148 0.004323 0.12% Gravity::get_new_grav_vector() 11 0.002864 0.00333 0.003706 0.11% Gravity::get_old_grav_vector() 10 0.001562 0.002025 0.003226 0.09% Amr::coarseTimeStep() 10 0.001291 0.001941 0.002578 0.07% Castro::buildMetrics() 1 0.001485 0.001779 0.00233 0.07% Castro::finalize_do_advance() 10 0.0004431 0.001229 0.00165 0.05% AmrLevel::FillPatch() 41 0.0008085 0.001051 0.001487 0.04% Amr::InitAmr() 1 0.0002686 0.0003595 0.0005134 0.01% Amr::timeStep() 10 0.0001456 0.000226 0.000421 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002743 0.000293 0.0003413 0.01% DistributionMapping::LeastUsedCPUs() 1 7.036e-06 0.0001888 0.0002916 0.01% Castro::clean_state() 62 0.0001404 0.0001595 0.0001803 0.01% Castro::do_advance_ctu() 10 0.0001205 0.0001474 0.00017 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001066 0.0001197 0.0001614 0.00% StateDataPhysBCFunct::() 41 9.156e-05 0.0001194 0.0001603 0.00% Castro::enforce_consistent_e() 1 8.083e-05 8.895e-05 0.0001267 0.00% Castro::finalize_advance() 10 7.001e-05 9.283e-05 0.0001135 0.00% Castro::do_old_sources() 10 7.873e-05 9.538e-05 0.0001038 0.00% FabArray::ParallelCopy() 41 7.667e-05 8.195e-05 9.978e-05 0.00% Castro::do_new_sources() 10 5.714e-05 7.075e-05 9.426e-05 0.00% FillPatchSingleLevel 41 5.876e-05 6.802e-05 8.102e-05 0.00% Castro::construct_old_source() 50 5.426e-05 6.812e-05 7.784e-05 0.00% Amr::writeSmallPlotFile() 1 3.035e-05 5.587e-05 7.745e-05 0.00% Castro::Castro() 1 5.394e-05 6.354e-05 7.452e-05 0.00% FabArrayBase::getCPC() 41 4.45e-05 5.61e-05 7.074e-05 0.00% Amr::FinalizeInit() 1 4.031e-06 1.282e-05 6.794e-05 0.00% Castro::subcycle_advance_ctu() 10 4.547e-05 5.013e-05 6.11e-05 0.00% Castro::apply_source_to_state() 20 3.514e-05 4.787e-05 5.776e-05 0.00% Castro::construct_old_gravity() 10 3.394e-05 4.453e-05 5.565e-05 0.00% Castro::advance() 10 3.955e-05 4.705e-05 5.518e-05 0.00% Castro::construct_new_gravity() 10 3.084e-05 3.601e-05 4.142e-05 0.00% Castro::check_for_nan() 20 2.284e-05 2.558e-05 3.411e-05 0.00% FabArrayBase::CPC::define() 2 2.166e-05 2.644e-05 3.353e-05 0.00% Amr::defBaseLevel() 1 2.261e-05 2.854e-05 3.329e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.475e-05 1.936e-05 3.167e-05 0.00% Castro::enforce_speed_limit() 62 2.531e-05 2.786e-05 3.074e-05 0.00% Castro::expand_state() 10 2.153e-05 2.518e-05 2.888e-05 0.00% Castro::create_source_corrector() 10 7.433e-06 1.112e-05 2.522e-05 0.00% Castro::post_timestep() 10 1.295e-05 1.562e-05 2.296e-05 0.00% Castro::post_init() 1 1.635e-05 1.81e-05 2.081e-05 0.00% Amr::initSubcycle() 1 9.801e-06 1.309e-05 1.936e-05 0.00% Gravity::set_mass_offset() 10 8.643e-06 1.196e-05 1.371e-05 0.00% Gravity::swapTimeLevels() 10 7.84e-06 9.949e-06 1.31e-05 0.00% Castro::computeNewDt() 9 7.945e-06 9.317e-06 1.104e-05 0.00% Castro::FluxRegCrseInit 10 5.896e-06 7.822e-06 1.065e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.1e-06 5.322e-06 8.832e-06 0.00% Castro::retry_advance_ctu() 10 6.754e-06 7.698e-06 8.377e-06 0.00% Amr::InitializeInit() 1 1.816e-06 2.529e-06 5.767e-06 0.00% Castro::computeInitialDt() 2 2.808e-06 3.676e-06 4.083e-06 0.00% Castro::post_regrid() 1 1.876e-06 2.61e-06 3.329e-06 0.00% Castro::FluxRegFineAdd() 10 1.981e-06 2.337e-06 3.127e-06 0.00% Amr::init() 1 1.885e-06 2.29e-06 3.016e-06 0.00% Amr::initialInit() 1 1.169e-06 1.892e-06 2.729e-06 0.00% DistributionMapping::Distribute() 1 9.26e-07 1.145e-06 1.344e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.512 3.512 3.512 100.00% Amr::coarseTimeStep() 10 3.281 3.281 3.281 93.40% Amr::timeStep() 10 3.268 3.268 3.269 93.06% Castro::advance() 10 3.252 3.252 3.253 92.61% Castro::subcycle_advance_ctu() 10 3.174 3.179 3.195 90.98% Castro::do_advance_ctu() 10 3.174 3.179 3.195 90.97% Castro::construct_ctu_hydro_source() 10 2.428 2.431 2.434 69.28% Gravity::make_radial_gravity() 21 0.3108 0.3286 0.3422 9.74% Amr::init() 1 0.2195 0.2197 0.2198 6.26% AmrLevel::FillPatch() 41 0.1737 0.1975 0.2176 6.19% Gravity::get_new_grav_vector() 11 0.2091 0.211 0.2131 6.07% Castro::construct_old_gravity() 10 0.1851 0.1997 0.2126 6.05% Gravity::get_old_grav_vector() 10 0.1841 0.1991 0.212 6.04% Amr::initialInit() 1 0.2066 0.2069 0.2073 5.90% FillPatchIterator::Initialize 41 0.1435 0.1656 0.1933 5.50% Castro::construct_new_gravity() 10 0.186 0.1871 0.1883 5.36% Amr::InitializeInit() 1 0.07581 0.116 0.1788 5.09% Amr::defBaseLevel() 1 0.0758 0.1159 0.1788 5.09% Castro::initialize_do_advance() 10 0.1551 0.1643 0.1751 4.98% FillPatchIterator::FillFromLevel0() 41 0.1076 0.125 0.1605 4.57% FillPatchSingleLevel 41 0.1074 0.1249 0.1603 4.56% Castro::initData() 1 0.05727 0.09823 0.1567 4.46% Amr::FinalizeInit() 1 0.02799 0.09098 0.1308 3.72% Castro::estTimeStep() 21 0.03174 0.09203 0.1307 3.72% FabArray::ParallelCopy() 41 0.0764 0.09233 0.1293 3.68% Castro::clean_state() 62 0.109 0.1154 0.121 3.45% Castro::expand_state() 10 0.09636 0.1095 0.1209 3.44% check_for_negative_density() 10 0.03031 0.07197 0.1115 3.17% Castro::computeInitialDt() 2 0.0025 0.06554 0.1056 3.01% Castro::do_old_sources() 10 0.09007 0.09763 0.1035 2.95% amrex::Copy() 193 0.06415 0.07919 0.09677 2.76% FabArray::ParallelCopy_finish() 41 0.03768 0.05182 0.09508 2.71% FabArray::setVal() 143 0.0548 0.06821 0.07564 2.15% Castro::initialize_advance() 10 0.05294 0.07034 0.07504 2.14% Castro::do_new_sources() 10 0.05972 0.0636 0.0701 2.00% Castro::computeTemp() 63 0.0624 0.06796 0.07005 1.99% Castro::reset_internal_energy(MultiFab) 63 0.0446 0.04836 0.05124 1.46% Castro::reset_internal_energy(Fab) 1008 0.04432 0.04806 0.05096 1.45% Castro::normalize_species() 62 0.04108 0.04223 0.04536 1.29% FabArray::ParallelCopy_nowait() 41 0.03412 0.04043 0.04279 1.22% StateDataPhysBCFunct::() 41 0.02993 0.03248 0.03488 0.99% StateData::FillBoundary(geom) 41 0.02984 0.03236 0.03478 0.99% Castro::construct_new_source() 50 0.02754 0.03065 0.03453 0.98% Gravity::interpolate_monopole_grav() 21 0.02766 0.0292 0.03027 0.86% Castro::construct_new_gravity_source() 10 0.02188 0.02431 0.0277 0.79% Castro::post_init() 1 0.02475 0.02511 0.02537 0.72% Castro::finalize_do_advance() 10 0.01155 0.01848 0.02268 0.65% Amr::writePlotFile() 2 0.01991 0.02012 0.02038 0.58% Castro::post_timestep() 10 0.01461 0.01546 0.01619 0.46% Castro::check_for_nan() 20 0.009618 0.01147 0.01409 0.40% MultiFab::contains_nan() 20 0.009584 0.01144 0.01407 0.40% Castro::Castro() 1 0.009673 0.01127 0.01406 0.40% Castro::apply_source_to_state() 20 0.01062 0.0126 0.01384 0.39% FabArray::Saxpy() 20 0.01056 0.01255 0.01379 0.39% VisMF::Write(FabArray) 2 0.008847 0.009315 0.01147 0.33% FabArray::setDomainBndry() 41 0.006242 0.009145 0.01066 0.30% Castro::construct_old_source() 50 0.006649 0.009383 0.01009 0.29% Castro::construct_old_gravity_source() 10 0.006584 0.009315 0.01001 0.28% Castro::initMFs() 1 0.006344 0.007598 0.00993 0.28% Castro::computeNewDt() 9 0.009233 0.009246 0.009256 0.26% AmrLevel::AmrLevel(dm) 1 0.005285 0.006224 0.00803 0.23% StateData::define() 4 0.005267 0.006205 0.007998 0.23% Castro::enforce_min_density() 62 0.005579 0.005985 0.006313 0.18% Castro::swap_state_time_levels() 10 0.003157 0.004146 0.0044 0.13% Castro::finalize_advance() 10 0.003009 0.003275 0.003509 0.10% Castro::buildMetrics() 1 0.001608 0.001929 0.002534 0.07% Castro::post_regrid() 1 0.001467 0.001562 0.001774 0.05% Amr::InitAmr() 1 0.0002797 0.0003726 0.0005328 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.321e-05 0.0001953 0.0002986 0.01% DistributionMapping::LeastUsedCPUs() 1 7.036e-06 0.0001888 0.0002916 0.01% Castro::enforce_consistent_e() 1 8.083e-05 8.895e-05 0.0001267 0.00% FabArrayBase::getCPC() 41 6.731e-05 8.253e-05 9.557e-05 0.00% Amr::writeSmallPlotFile() 1 3.035e-05 5.587e-05 7.745e-05 0.00% FabArrayBase::CPC::define() 2 2.166e-05 2.644e-05 3.353e-05 0.00% Castro::enforce_speed_limit() 62 2.531e-05 2.786e-05 3.074e-05 0.00% Castro::create_source_corrector() 10 7.433e-06 1.112e-05 2.522e-05 0.00% Amr::initSubcycle() 1 9.801e-06 1.309e-05 1.936e-05 0.00% Gravity::set_mass_offset() 10 8.643e-06 1.196e-05 1.371e-05 0.00% Gravity::swapTimeLevels() 10 7.84e-06 9.949e-06 1.31e-05 0.00% Castro::FluxRegCrseInit 10 5.896e-06 7.822e-06 1.065e-05 0.00% Castro::retry_advance_ctu() 10 6.754e-06 7.698e-06 8.377e-06 0.00% Castro::FluxRegFineAdd() 10 1.981e-06 2.337e-06 3.127e-06 0.00% DistributionMapping::Distribute() 1 9.26e-07 1.145e-06 1.344e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 36 B 48 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.12-9-gd884f44493c0) finalized