Initializing AMReX (23.12-8-g43d71da32fa4)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.12-8-g43d71da32fa4) initialized Starting run at 06:22:12 UTC on 2023-12-11. Successfully read inputs file ... Castro git describe: 23.12-6-g9cf0cb6b3 AMReX git describe: 23.12-8-g43d71da32 Microphysics git describe: 23.12-1-gbdf6a18e reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013133423 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.35438503 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.340257964 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.327712456 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.326348172 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.326253901 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.357879566 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.317195639 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.308567029 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.313394485 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.309707763 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007343869 seconds Ending run at 06:22:15 UTC on 2023-12-11. Run time = 3.483302779 Run time without initialization = 3.294127062 Average number of zones advanced per microsecond: 0.796 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.482 ... 3.483 ... 3.483 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3122 2.3556 2.3878 68.55% Gravity::make_radial_gravity() 21 0.2877 0.2965 0.3094 8.88% Castro::initData() 1 0.04808 0.08571 0.1254 3.60% check_for_negative_density() 10 0.03596 0.07463 0.1223 3.51% Castro::estTimeStep() 21 0.02315 0.07041 0.1122 3.22% amrex::Copy() 193 0.06113 0.07634 0.08713 2.50% FabArray::ParallelCopy_finish() 41 0.03543 0.0474 0.08213 2.36% FabArray::setVal() 143 0.06344 0.07177 0.07739 2.22% Castro::reset_internal_energy(Fab) 1008 0.04582 0.04763 0.04934 1.42% Castro::normalize_species() 62 0.04101 0.04185 0.043 1.23% FabArray::ParallelCopy_nowait() 41 0.03376 0.04037 0.04243 1.22% StateData::FillBoundary(geom) 41 0.02931 0.03298 0.0368 1.06% FillPatchIterator::Initialize 41 0.02701 0.03152 0.03462 0.99% Gravity::interpolate_monopole_grav() 21 0.02719 0.02888 0.02973 0.85% Castro::construct_new_gravity_source() 10 0.02274 0.02488 0.02757 0.79% Castro::computeTemp() 63 0.01835 0.01981 0.02075 0.60% Castro::initialize_do_advance() 10 0.01169 0.01667 0.01758 0.50% Castro::initialize_advance() 10 0.009206 0.01219 0.01514 0.43% FabArray::Saxpy() 20 0.01077 0.0129 0.01416 0.41% FabArray::setDomainBndry() 41 0.006539 0.009288 0.0121 0.35% VisMF::Write(FabArray) 2 0.0089 0.009424 0.01178 0.34% MultiFab::contains_nan() 20 0.009652 0.01069 0.01154 0.33% Castro::construct_old_gravity_source() 10 0.006398 0.01001 0.01075 0.31% Amr::writePlotFile() 2 0.006064 0.008362 0.00898 0.26% Castro::enforce_min_density() 62 0.007066 0.007423 0.007656 0.22% Castro::construct_new_source() 50 0.005707 0.006418 0.007293 0.21% Castro::initMFs() 1 0.006276 0.006355 0.006732 0.19% StateData::define() 4 0.005118 0.005185 0.005355 0.15% Castro::swap_state_time_levels() 10 0.00314 0.004151 0.004393 0.13% main() 1 0.003324 0.003876 0.004317 0.12% Gravity::get_new_grav_vector() 11 0.002818 0.003469 0.003908 0.11% Amr::coarseTimeStep() 10 0.001332 0.00214 0.003085 0.09% Gravity::get_old_grav_vector() 10 0.001535 0.001904 0.002281 0.07% Castro::buildMetrics() 1 0.001497 0.001508 0.001529 0.04% Castro::finalize_do_advance() 10 0.0004621 0.001009 0.001197 0.03% AmrLevel::FillPatch() 41 0.0007557 0.0008503 0.0009466 0.03% Amr::InitAmr() 1 0.0002513 0.0002797 0.0003993 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002836 0.0003207 0.0003643 0.01% Amr::timeStep() 10 0.0001998 0.0002323 0.0003486 0.01% Castro::clean_state() 62 0.0001384 0.0001629 0.0001868 0.01% Castro::do_advance_ctu() 10 0.0001256 0.0001518 0.0001776 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001154 0.0001413 0.0001682 0.00% StateDataPhysBCFunct::() 41 0.000103 0.0001217 0.0001574 0.00% DistributionMapping::LeastUsedCPUs() 1 7.481e-06 0.0001235 0.0001427 0.00% Castro::finalize_advance() 10 8.63e-05 0.0001083 0.0001329 0.00% Castro::do_old_sources() 10 8.722e-05 9.892e-05 0.0001132 0.00% Castro::Castro() 1 7.973e-05 8.935e-05 0.0001101 0.00% Castro::enforce_consistent_e() 1 8.064e-05 9.089e-05 0.0001087 0.00% FabArray::ParallelCopy() 41 8.032e-05 8.981e-05 0.0001004 0.00% Amr::FinalizeInit() 1 3.964e-06 1.664e-05 9.83e-05 0.00% Castro::construct_old_source() 50 6.845e-05 7.722e-05 9.117e-05 0.00% Castro::do_new_sources() 10 5.586e-05 6.842e-05 8.636e-05 0.00% FillPatchSingleLevel 41 6.702e-05 7.614e-05 8.617e-05 0.00% FabArrayBase::getCPC() 41 4.694e-05 5.92e-05 7.555e-05 0.00% Castro::apply_source_to_state() 20 3.856e-05 5.027e-05 5.981e-05 0.00% Castro::subcycle_advance_ctu() 10 4.479e-05 5.205e-05 5.946e-05 0.00% Amr::writeSmallPlotFile() 1 3.142e-05 4.506e-05 5.663e-05 0.00% Amr::defBaseLevel() 1 2.687e-05 3.428e-05 5.465e-05 0.00% Castro::advance() 10 3.87e-05 4.568e-05 5.29e-05 0.00% Castro::retry_advance_ctu() 10 6.14e-06 1.233e-05 4.66e-05 0.00% Castro::construct_old_gravity() 10 3.388e-05 3.915e-05 4.598e-05 0.00% Castro::construct_new_gravity() 10 3.134e-05 3.714e-05 4.393e-05 0.00% Castro::enforce_speed_limit() 62 2.617e-05 2.985e-05 3.739e-05 0.00% Castro::expand_state() 10 2.311e-05 2.614e-05 3.131e-05 0.00% FabArrayBase::CPC::define() 2 2.11e-05 2.608e-05 3.031e-05 0.00% Castro::check_for_nan() 20 2.259e-05 2.506e-05 3.027e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.436e-05 1.794e-05 2.131e-05 0.00% Castro::post_timestep() 10 1.194e-05 1.572e-05 2.028e-05 0.00% Castro::post_init() 1 1.296e-05 1.461e-05 1.596e-05 0.00% Gravity::set_mass_offset() 10 8.759e-06 1.19e-05 1.391e-05 0.00% Gravity::swapTimeLevels() 10 6.822e-06 9.604e-06 1.258e-05 0.00% Castro::create_source_corrector() 10 7.172e-06 8.911e-06 1.122e-05 0.00% Castro::computeNewDt() 9 7.227e-06 8.838e-06 1.107e-05 0.00% Amr::initSubcycle() 1 9.706e-06 1.018e-05 1.065e-05 0.00% Castro::FluxRegCrseInit 10 6.664e-06 7.833e-06 9.322e-06 0.00% Amr::initialInit() 1 1.3e-06 3.161e-06 7.989e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.515e-06 4.202e-06 5.472e-06 0.00% Castro::computeInitialDt() 2 3.215e-06 3.894e-06 4.828e-06 0.00% Castro::post_regrid() 1 1.766e-06 2.971e-06 4.795e-06 0.00% Amr::InitializeInit() 1 1.718e-06 2.189e-06 4.648e-06 0.00% Castro::FluxRegFineAdd() 10 1.78e-06 2.37e-06 2.856e-06 0.00% Amr::init() 1 1.739e-06 2.283e-06 2.666e-06 0.00% DistributionMapping::Distribute() 1 8.95e-07 9.919e-07 1.297e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.482 3.483 3.483 100.00% Amr::coarseTimeStep() 10 3.283 3.283 3.283 94.23% Amr::timeStep() 10 3.269 3.27 3.27 93.89% Castro::advance() 10 3.253 3.253 3.254 93.41% Castro::subcycle_advance_ctu() 10 3.171 3.175 3.183 91.39% Castro::do_advance_ctu() 10 3.171 3.175 3.183 91.39% Castro::construct_ctu_hydro_source() 10 2.445 2.451 2.455 70.48% Gravity::make_radial_gravity() 21 0.3031 0.3125 0.3234 9.28% Gravity::get_new_grav_vector() 11 0.2093 0.2104 0.2117 6.08% AmrLevel::FillPatch() 41 0.1749 0.192 0.204 5.86% Castro::construct_old_gravity() 10 0.1749 0.1841 0.1927 5.53% Gravity::get_old_grav_vector() 10 0.1743 0.1835 0.1921 5.51% Amr::init() 1 0.1886 0.1887 0.1888 5.42% Castro::construct_new_gravity() 10 0.1835 0.1842 0.1849 5.31% FillPatchIterator::Initialize 41 0.1461 0.1621 0.1806 5.19% Amr::initialInit() 1 0.1753 0.1756 0.1759 5.05% Castro::initialize_do_advance() 10 0.153 0.1611 0.1695 4.87% FillPatchIterator::FillFromLevel0() 41 0.1111 0.1213 0.1471 4.22% FillPatchSingleLevel 41 0.1109 0.1211 0.1469 4.22% Amr::InitializeInit() 1 0.06852 0.1062 0.1458 4.19% Amr::defBaseLevel() 1 0.06852 0.1062 0.1458 4.19% Castro::initData() 1 0.05219 0.08986 0.1295 3.72% check_for_negative_density() 10 0.03596 0.07463 0.1223 3.51% Castro::clean_state() 62 0.1121 0.1163 0.1198 3.44% FabArray::ParallelCopy() 41 0.07716 0.08795 0.1161 3.33% Castro::expand_state() 10 0.09747 0.1074 0.1151 3.30% Castro::estTimeStep() 21 0.02315 0.07041 0.1122 3.22% Amr::FinalizeInit() 1 0.0297 0.06937 0.1074 3.08% Castro::do_old_sources() 10 0.08802 0.09434 0.09891 2.84% amrex::Copy() 193 0.06113 0.07634 0.08713 2.50% FabArray::ParallelCopy_finish() 41 0.03543 0.0474 0.08213 2.36% Castro::computeInitialDt() 2 0.002333 0.04187 0.07961 2.29% Castro::initialize_advance() 10 0.06601 0.0749 0.07921 2.27% FabArray::setVal() 143 0.06344 0.07177 0.07739 2.22% Castro::do_new_sources() 10 0.06043 0.06439 0.07145 2.05% Castro::computeTemp() 63 0.06446 0.06776 0.07038 2.02% Castro::reset_internal_energy(MultiFab) 63 0.04611 0.04795 0.04963 1.42% Castro::reset_internal_energy(Fab) 1008 0.04582 0.04763 0.04934 1.42% Castro::normalize_species() 62 0.04101 0.04185 0.043 1.23% FabArray::ParallelCopy_nowait() 41 0.03387 0.04045 0.04252 1.22% StateDataPhysBCFunct::() 41 0.02943 0.0331 0.03692 1.06% StateData::FillBoundary(geom) 41 0.02931 0.03298 0.0368 1.06% Castro::construct_new_source() 50 0.02845 0.0313 0.03433 0.99% Gravity::interpolate_monopole_grav() 21 0.02719 0.02888 0.02973 0.85% Castro::construct_new_gravity_source() 10 0.02274 0.02488 0.02757 0.79% Castro::post_init() 1 0.02687 0.02722 0.02746 0.79% Castro::finalize_do_advance() 10 0.01243 0.0202 0.02502 0.72% Amr::writePlotFile() 2 0.02029 0.02056 0.02084 0.60% Castro::post_timestep() 10 0.0151 0.01599 0.01682 0.48% Castro::apply_source_to_state() 20 0.01083 0.01295 0.01422 0.41% FabArray::Saxpy() 20 0.01077 0.0129 0.01416 0.41% FabArray::setDomainBndry() 41 0.006539 0.009288 0.0121 0.35% VisMF::Write(FabArray) 2 0.0089 0.009424 0.01178 0.34% Castro::check_for_nan() 20 0.009677 0.01071 0.01157 0.33% MultiFab::contains_nan() 20 0.009652 0.01069 0.01154 0.33% Castro::Castro() 1 0.01088 0.01101 0.01145 0.33% Castro::construct_old_source() 50 0.006466 0.01008 0.01085 0.31% Castro::construct_old_gravity_source() 10 0.006398 0.01001 0.01075 0.31% Castro::computeNewDt() 9 0.009343 0.00937 0.009454 0.27% Castro::enforce_min_density() 62 0.007066 0.007423 0.007656 0.22% Castro::initMFs() 1 0.006276 0.006355 0.006732 0.19% AmrLevel::AmrLevel(dm) 1 0.005133 0.005203 0.005373 0.15% StateData::define() 4 0.005118 0.005185 0.005355 0.15% Castro::swap_state_time_levels() 10 0.00314 0.004151 0.004393 0.13% Castro::finalize_advance() 10 0.003214 0.003428 0.003669 0.11% Castro::buildMetrics() 1 0.001614 0.001636 0.001667 0.05% Castro::post_regrid() 1 0.001497 0.001585 0.001667 0.05% Amr::InitAmr() 1 0.0002615 0.0002899 0.0004093 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.19e-05 0.0001287 0.0001495 0.00% DistributionMapping::LeastUsedCPUs() 1 7.481e-06 0.0001235 0.0001427 0.00% Castro::enforce_consistent_e() 1 8.064e-05 9.089e-05 0.0001087 0.00% FabArrayBase::getCPC() 41 6.82e-05 8.528e-05 0.0001031 0.00% Amr::writeSmallPlotFile() 1 3.142e-05 4.506e-05 5.663e-05 0.00% Castro::retry_advance_ctu() 10 6.14e-06 1.233e-05 4.66e-05 0.00% Castro::enforce_speed_limit() 62 2.617e-05 2.985e-05 3.739e-05 0.00% FabArrayBase::CPC::define() 2 2.11e-05 2.608e-05 3.031e-05 0.00% Gravity::set_mass_offset() 10 8.759e-06 1.19e-05 1.391e-05 0.00% Gravity::swapTimeLevels() 10 6.822e-06 9.604e-06 1.258e-05 0.00% Castro::create_source_corrector() 10 7.172e-06 8.911e-06 1.122e-05 0.00% Amr::initSubcycle() 1 9.706e-06 1.018e-05 1.065e-05 0.00% Castro::FluxRegCrseInit 10 6.664e-06 7.833e-06 9.322e-06 0.00% Castro::FluxRegFineAdd() 10 1.78e-06 2.37e-06 2.856e-06 0.00% DistributionMapping::Distribute() 1 8.95e-07 9.919e-07 1.297e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 30 B 36 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.12-8-g43d71da32fa4) finalized