Initializing AMReX (23.12-10-gecaa46d0be4b)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.12-10-gecaa46d0be4b) initialized Starting run at 19:14:45 UTC on 2023-12-12. Successfully read inputs file ... Castro git describe: 23.12-8-gff14a423b AMReX git describe: 23.12-10-gecaa46d0b Microphysics git describe: 23.12-1-gbdf6a18e reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013574161 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.366459673 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.347029883 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.325317021 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.327324485 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.326953365 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.36261429 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.313365065 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.309658663 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.313040078 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.31279737 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007408548 seconds Ending run at 19:14:49 UTC on 2023-12-12. Run time = 3.521637895 Run time without initialization = 3.31758983 Average number of zones advanced per microsecond: 0.790 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.52 ... 3.521 ... 3.522 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2940 2.3555 2.3876 67.80% Gravity::make_radial_gravity() 21 0.2903 0.3099 0.3303 9.38% check_for_negative_density() 10 0.04659 0.08411 0.1472 4.18% Castro::initData() 1 0.04893 0.09093 0.1352 3.84% Castro::estTimeStep() 21 0.02875 0.07677 0.1249 3.55% FabArray::ParallelCopy_finish() 41 0.03949 0.05302 0.0982 2.79% amrex::Copy() 193 0.06366 0.07799 0.09501 2.70% FabArray::setVal() 143 0.05338 0.06774 0.07614 2.16% Castro::reset_internal_energy(Fab) 1008 0.04597 0.04774 0.04912 1.39% Castro::normalize_species() 62 0.04139 0.04195 0.04273 1.21% FabArray::ParallelCopy_nowait() 41 0.03355 0.04033 0.04198 1.19% StateData::FillBoundary(geom) 41 0.03038 0.0328 0.0367 1.04% FillPatchIterator::Initialize 41 0.02617 0.03138 0.03403 0.97% Gravity::interpolate_monopole_grav() 21 0.02761 0.02926 0.03049 0.87% Castro::construct_new_gravity_source() 10 0.02159 0.02424 0.02602 0.74% Castro::computeTemp() 63 0.01877 0.01961 0.02022 0.57% Castro::initialize_do_advance() 10 0.01112 0.01595 0.01752 0.50% MultiFab::contains_nan() 20 0.009871 0.01182 0.01467 0.42% Castro::initialize_advance() 10 0.003802 0.01072 0.01413 0.40% FabArray::Saxpy() 20 0.01073 0.01259 0.01411 0.40% FabArray::setDomainBndry() 41 0.006388 0.01014 0.01313 0.37% VisMF::Write(FabArray) 2 0.008415 0.009347 0.01219 0.35% Amr::writePlotFile() 2 0.006327 0.009087 0.01134 0.32% Castro::construct_old_gravity_source() 10 0.006566 0.009378 0.01046 0.30% Castro::initMFs() 1 0.00621 0.007376 0.0101 0.29% StateData::define() 4 0.005182 0.005983 0.007984 0.23% Castro::enforce_min_density() 62 0.007137 0.007408 0.007664 0.22% Castro::construct_new_source() 50 0.005662 0.006409 0.006904 0.20% Castro::swap_state_time_levels() 10 0.003082 0.004124 0.004926 0.14% main() 1 0.003424 0.004252 0.004884 0.14% Gravity::get_new_grav_vector() 11 0.00282 0.00342 0.003867 0.11% Castro::buildMetrics() 1 0.00146 0.001696 0.002286 0.06% Gravity::get_old_grav_vector() 10 0.001408 0.001895 0.002231 0.06% Amr::coarseTimeStep() 10 0.001066 0.001585 0.00188 0.05% Castro::finalize_do_advance() 10 0.0004545 0.001013 0.001271 0.04% AmrLevel::FillPatch() 41 0.0007116 0.000803 0.0009327 0.03% Amr::InitAmr() 1 0.0002696 0.0003526 0.000501 0.01% Amr::timeStep() 10 0.0001269 0.0002164 0.0004938 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002834 0.0002906 0.0003058 0.01% DistributionMapping::LeastUsedCPUs() 1 7.134e-06 0.0001788 0.0002645 0.01% Castro::clean_state() 62 0.0001372 0.0001482 0.0001741 0.00% Castro::do_advance_ctu() 10 0.0001233 0.0001472 0.000174 0.00% StateDataPhysBCFunct::() 41 8.755e-05 0.0001176 0.0001478 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001049 0.0001241 0.0001426 0.00% Castro::enforce_consistent_e() 1 8.893e-05 9.91e-05 0.0001179 0.00% FabArray::ParallelCopy() 41 6.599e-05 8.656e-05 0.0001173 0.00% Castro::finalize_advance() 10 6.925e-05 8.795e-05 0.0001062 0.00% Castro::do_old_sources() 10 7.229e-05 8.534e-05 9.659e-05 0.00% Castro::construct_old_source() 50 5.421e-05 7.116e-05 8.951e-05 0.00% FillPatchSingleLevel 41 5.373e-05 6.85e-05 8.882e-05 0.00% Castro::do_new_sources() 10 5.323e-05 6.646e-05 8.739e-05 0.00% Castro::Castro() 1 5.602e-05 6.464e-05 7.791e-05 0.00% Amr::FinalizeInit() 1 4.192e-06 1.281e-05 6.828e-05 0.00% Castro::subcycle_advance_ctu() 10 4.301e-05 4.964e-05 6.316e-05 0.00% FabArrayBase::getCPC() 41 4.086e-05 5e-05 6.203e-05 0.00% Amr::writeSmallPlotFile() 1 3.114e-05 4.255e-05 5.485e-05 0.00% Castro::advance() 10 3.589e-05 4.423e-05 5.112e-05 0.00% Castro::apply_source_to_state() 20 3.658e-05 4.421e-05 4.94e-05 0.00% Castro::construct_new_gravity() 10 2.974e-05 3.452e-05 4.312e-05 0.00% Castro::construct_old_gravity() 10 2.963e-05 3.444e-05 3.822e-05 0.00% Amr::defBaseLevel() 1 3.195e-05 3.42e-05 3.693e-05 0.00% FabArrayBase::CPC::define() 2 2.143e-05 2.648e-05 3.135e-05 0.00% Castro::enforce_speed_limit() 62 2.409e-05 2.707e-05 3.128e-05 0.00% Castro::expand_state() 10 2.222e-05 2.452e-05 2.894e-05 0.00% Amr::initSubcycle() 1 9.905e-06 1.403e-05 2.693e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.373e-05 1.911e-05 2.662e-05 0.00% Castro::check_for_nan() 20 2.167e-05 2.437e-05 2.644e-05 0.00% Castro::post_init() 1 1.29e-05 1.56e-05 1.832e-05 0.00% Castro::retry_advance_ctu() 10 6.175e-06 8.384e-06 1.713e-05 0.00% Castro::post_timestep() 10 1.136e-05 1.403e-05 1.705e-05 0.00% Gravity::set_mass_offset() 10 8.423e-06 1.087e-05 1.349e-05 0.00% Gravity::swapTimeLevels() 10 7.598e-06 1.001e-05 1.236e-05 0.00% Castro::create_source_corrector() 10 5.871e-06 8.382e-06 1.097e-05 0.00% Castro::computeNewDt() 9 7.71e-06 8.348e-06 9.906e-06 0.00% Castro::FluxRegCrseInit 10 5.655e-06 7.525e-06 9.792e-06 0.00% Amr::initialInit() 1 1.43e-06 2.609e-06 9.666e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.187e-06 5.705e-06 6.964e-06 0.00% Castro::post_regrid() 1 2.098e-06 3.625e-06 6.27e-06 0.00% Amr::InitializeInit() 1 2.062e-06 2.706e-06 5.6e-06 0.00% Castro::computeInitialDt() 2 3.215e-06 4.12e-06 4.919e-06 0.00% Amr::init() 1 1.983e-06 2.276e-06 2.797e-06 0.00% Castro::FluxRegFineAdd() 10 1.881e-06 2.216e-06 2.57e-06 0.00% DistributionMapping::Distribute() 1 1.118e-06 1.244e-06 1.308e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.52 3.521 3.522 100.00% Amr::coarseTimeStep() 10 3.305 3.305 3.305 93.86% Amr::timeStep() 10 3.293 3.293 3.294 93.53% Castro::advance() 10 3.277 3.277 3.278 93.07% Castro::subcycle_advance_ctu() 10 3.199 3.204 3.223 91.52% Castro::do_advance_ctu() 10 3.199 3.204 3.223 91.52% Castro::construct_ctu_hydro_source() 10 2.455 2.46 2.465 69.98% Gravity::make_radial_gravity() 21 0.3061 0.3254 0.3437 9.76% AmrLevel::FillPatch() 41 0.1822 0.2 0.2191 6.22% Castro::construct_old_gravity() 10 0.1831 0.1991 0.2159 6.13% Gravity::get_old_grav_vector() 10 0.182 0.1984 0.2154 6.12% Gravity::get_new_grav_vector() 11 0.2082 0.2093 0.2106 5.98% Amr::init() 1 0.2033 0.2035 0.2036 5.78% FillPatchIterator::Initialize 41 0.148 0.1681 0.1953 5.55% Amr::initialInit() 1 0.1896 0.19 0.1904 5.41% Castro::construct_new_gravity() 10 0.1837 0.1843 0.185 5.25% Castro::initialize_do_advance() 10 0.1573 0.1673 0.1794 5.09% FillPatchIterator::FillFromLevel0() 41 0.1123 0.1266 0.1628 4.62% FillPatchSingleLevel 41 0.1122 0.1265 0.1626 4.62% Amr::InitializeInit() 1 0.06819 0.1123 0.1612 4.58% Amr::defBaseLevel() 1 0.06819 0.1123 0.1612 4.58% check_for_negative_density() 10 0.04659 0.08411 0.1472 4.18% Castro::initData() 1 0.05288 0.09495 0.1389 3.94% FabArray::ParallelCopy() 41 0.08164 0.09352 0.1319 3.75% Castro::estTimeStep() 21 0.02875 0.07677 0.1249 3.55% Castro::expand_state() 10 0.1034 0.1132 0.1229 3.49% Amr::FinalizeInit() 1 0.02901 0.07767 0.1215 3.45% Castro::clean_state() 62 0.1135 0.1162 0.1184 3.36% Castro::do_old_sources() 10 0.08953 0.0958 0.101 2.87% FabArray::ParallelCopy_finish() 41 0.03949 0.05302 0.0982 2.79% Castro::computeInitialDt() 2 0.002332 0.05137 0.09542 2.71% amrex::Copy() 193 0.06366 0.07799 0.09501 2.70% FabArray::setVal() 143 0.05338 0.06774 0.07614 2.16% Castro::initialize_advance() 10 0.05031 0.06995 0.07493 2.13% Castro::computeTemp() 63 0.06509 0.06764 0.06963 1.98% Castro::do_new_sources() 10 0.06035 0.06373 0.06838 1.94% Castro::reset_internal_energy(MultiFab) 63 0.04625 0.04803 0.04941 1.40% Castro::reset_internal_energy(Fab) 1008 0.04597 0.04774 0.04912 1.39% Castro::normalize_species() 62 0.04139 0.04195 0.04273 1.21% FabArray::ParallelCopy_nowait() 41 0.03363 0.04041 0.04205 1.19% StateDataPhysBCFunct::() 41 0.03049 0.03291 0.03683 1.05% StateData::FillBoundary(geom) 41 0.03038 0.0328 0.0367 1.04% Castro::construct_new_source() 50 0.02725 0.03065 0.03281 0.93% Gravity::interpolate_monopole_grav() 21 0.02761 0.02926 0.03049 0.87% Castro::post_init() 1 0.02549 0.02594 0.02635 0.75% Castro::construct_new_gravity_source() 10 0.02159 0.02424 0.02602 0.74% Castro::finalize_do_advance() 10 0.0122 0.01735 0.02153 0.61% Amr::writePlotFile() 2 0.02061 0.02099 0.02149 0.61% Castro::post_timestep() 10 0.01559 0.0158 0.0162 0.46% Castro::check_for_nan() 20 0.009894 0.01185 0.01469 0.42% MultiFab::contains_nan() 20 0.009871 0.01182 0.01467 0.42% Castro::Castro() 1 0.009964 0.01117 0.01424 0.40% Castro::apply_source_to_state() 20 0.01078 0.01263 0.01415 0.40% FabArray::Saxpy() 20 0.01073 0.01259 0.01411 0.40% FabArray::setDomainBndry() 41 0.006388 0.01014 0.01313 0.37% VisMF::Write(FabArray) 2 0.008415 0.009347 0.01219 0.35% Castro::construct_old_source() 50 0.00662 0.009449 0.01055 0.30% Castro::construct_old_gravity_source() 10 0.006566 0.009378 0.01046 0.30% Castro::initMFs() 1 0.00621 0.007376 0.0101 0.29% Castro::computeNewDt() 9 0.009053 0.009068 0.009076 0.26% AmrLevel::AmrLevel(dm) 1 0.005198 0.006002 0.008011 0.23% StateData::define() 4 0.005182 0.005983 0.007984 0.23% Castro::enforce_min_density() 62 0.007137 0.007408 0.007664 0.22% Castro::swap_state_time_levels() 10 0.003082 0.004124 0.004926 0.14% Castro::finalize_advance() 10 0.003154 0.003361 0.003541 0.10% Castro::buildMetrics() 1 0.001577 0.001842 0.002498 0.07% Castro::post_regrid() 1 0.001523 0.001618 0.001945 0.06% Amr::InitAmr() 1 0.0002808 0.0003666 0.0005194 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.293e-05 0.0001857 0.0002727 0.01% DistributionMapping::LeastUsedCPUs() 1 7.134e-06 0.0001788 0.0002645 0.01% Castro::enforce_consistent_e() 1 8.893e-05 9.91e-05 0.0001179 0.00% FabArrayBase::getCPC() 41 6.743e-05 7.649e-05 8.702e-05 0.00% Amr::writeSmallPlotFile() 1 3.114e-05 4.255e-05 5.485e-05 0.00% FabArrayBase::CPC::define() 2 2.143e-05 2.648e-05 3.135e-05 0.00% Castro::enforce_speed_limit() 62 2.409e-05 2.707e-05 3.128e-05 0.00% Amr::initSubcycle() 1 9.905e-06 1.403e-05 2.693e-05 0.00% Castro::retry_advance_ctu() 10 6.175e-06 8.384e-06 1.713e-05 0.00% Gravity::set_mass_offset() 10 8.423e-06 1.087e-05 1.349e-05 0.00% Gravity::swapTimeLevels() 10 7.598e-06 1.001e-05 1.236e-05 0.00% Castro::create_source_corrector() 10 5.871e-06 8.382e-06 1.097e-05 0.00% Castro::FluxRegCrseInit 10 5.655e-06 7.525e-06 9.792e-06 0.00% Castro::FluxRegFineAdd() 10 1.881e-06 2.216e-06 2.57e-06 0.00% DistributionMapping::Distribute() 1 1.118e-06 1.244e-06 1.308e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 34 B 43 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.12-10-gecaa46d0be4b) finalized