Initializing AMReX (23.12-10-gecaa46d0be4b)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.12-10-gecaa46d0be4b) initialized Starting run at 06:20:17 UTC on 2023-12-12. Successfully read inputs file ... Castro git describe: 23.12-6-g9cf0cb6b3 AMReX git describe: 23.12-10-gecaa46d0b Microphysics git describe: 23.12-1-gbdf6a18e reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013389991 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.363094461 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.354465366 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.340130288 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.344526823 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.350727239 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.34028505 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.311389236 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.310166664 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.310677925 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.312615876 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007410717 seconds Ending run at 06:20:20 UTC on 2023-12-12. Run time = 3.558693968 Run time without initialization = 3.351346768 Average number of zones advanced per microsecond: 0.782 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.557 ... 3.558 ... 3.559 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2479 2.3568 2.4168 67.91% Gravity::make_radial_gravity() 21 0.292 0.3027 0.3129 8.79% check_for_negative_density() 10 0.0205 0.08385 0.1977 5.55% Castro::initData() 1 0.04735 0.09551 0.1434 4.03% Castro::estTimeStep() 21 0.04009 0.07815 0.1381 3.88% amrex::Copy() 193 0.07569 0.08096 0.09069 2.55% FabArray::setVal() 143 0.06723 0.07666 0.087 2.44% FabArray::ParallelCopy_finish() 41 0.03875 0.06006 0.07296 2.05% Castro::reset_internal_energy(Fab) 1008 0.04721 0.04827 0.04976 1.40% FabArray::ParallelCopy_nowait() 41 0.0402 0.04244 0.04388 1.23% Castro::normalize_species() 62 0.04198 0.04271 0.04353 1.22% FillPatchIterator::Initialize 41 0.02756 0.03445 0.03824 1.07% StateData::FillBoundary(geom) 41 0.02992 0.03334 0.03786 1.06% Gravity::interpolate_monopole_grav() 21 0.02908 0.02974 0.03173 0.89% Castro::construct_new_gravity_source() 10 0.02313 0.02628 0.02991 0.84% Castro::initialize_do_advance() 10 0.01243 0.01832 0.02333 0.66% Castro::computeTemp() 63 0.01963 0.02011 0.02078 0.58% FabArray::Saxpy() 20 0.01299 0.014 0.01552 0.44% Castro::initialize_advance() 10 0.01005 0.01229 0.01491 0.42% FabArray::setDomainBndry() 41 0.007267 0.0102 0.01277 0.36% VisMF::Write(FabArray) 2 0.008862 0.009423 0.01211 0.34% MultiFab::contains_nan() 20 0.009995 0.01088 0.01152 0.32% Castro::construct_old_gravity_source() 10 0.008794 0.0101 0.01072 0.30% Amr::writePlotFile() 2 0.006022 0.008744 0.009497 0.27% Castro::initMFs() 1 0.006138 0.007937 0.009486 0.27% StateData::define() 4 0.005047 0.006489 0.007729 0.22% Castro::enforce_min_density() 62 0.007227 0.007409 0.007606 0.21% Castro::construct_new_source() 50 0.006378 0.00648 0.006559 0.18% main() 1 0.003596 0.004667 0.005072 0.14% Castro::swap_state_time_levels() 10 0.003311 0.004423 0.005042 0.14% Gravity::get_new_grav_vector() 11 0.003047 0.003718 0.004115 0.12% Amr::coarseTimeStep() 10 0.001104 0.002044 0.002899 0.08% Gravity::get_old_grav_vector() 10 0.001795 0.002055 0.00234 0.07% Castro::buildMetrics() 1 0.001454 0.001867 0.002241 0.06% Castro::finalize_do_advance() 10 0.001147 0.001419 0.001643 0.05% AmrLevel::FillPatch() 41 0.0007781 0.0009183 0.00108 0.03% Castro::reset_internal_energy(MultiFab) 63 0.0002798 0.000381 0.000981 0.03% Amr::timeStep() 10 0.0001471 0.00022 0.0005078 0.01% Amr::InitAmr() 1 0.0002468 0.0003937 0.000487 0.01% DistributionMapping::LeastUsedCPUs() 1 7e-06 0.0001159 0.0002777 0.01% Castro::do_advance_ctu() 10 0.0001437 0.0001643 0.0002028 0.01% Castro::clean_state() 62 0.0001452 0.0001598 0.0001741 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001165 0.0001342 0.000167 0.00% StateDataPhysBCFunct::() 41 0.0001008 0.0001124 0.0001315 0.00% Castro::do_old_sources() 10 7.838e-05 9.605e-05 0.0001181 0.00% Castro::enforce_consistent_e() 1 7.969e-05 9.109e-05 0.0001112 0.00% Castro::finalize_advance() 10 7.328e-05 8.818e-05 0.0001073 0.00% Amr::FinalizeInit() 1 3.961e-06 1.844e-05 0.0001069 0.00% FabArray::ParallelCopy() 41 7.144e-05 8.615e-05 0.0001049 0.00% Castro::construct_old_source() 50 6.198e-05 8.295e-05 0.0001009 0.00% FillPatchSingleLevel 41 6.149e-05 7.219e-05 9.446e-05 0.00% Castro::Castro() 1 5.747e-05 7.08e-05 8.949e-05 0.00% Castro::advance() 10 3.59e-05 4.882e-05 8.002e-05 0.00% Castro::do_new_sources() 10 5.439e-05 6.849e-05 7.965e-05 0.00% FabArrayBase::getCPC() 41 4.383e-05 5.348e-05 7.772e-05 0.00% Castro::subcycle_advance_ctu() 10 4.168e-05 5.131e-05 6.069e-05 0.00% Castro::construct_old_gravity() 10 3.222e-05 3.968e-05 5.893e-05 0.00% Castro::apply_source_to_state() 20 4.608e-05 5.133e-05 5.824e-05 0.00% Amr::writeSmallPlotFile() 1 3.117e-05 4.31e-05 5.524e-05 0.00% Castro::construct_new_gravity() 10 3.047e-05 3.698e-05 5.31e-05 0.00% Castro::check_for_nan() 20 2.363e-05 2.861e-05 5.211e-05 0.00% Amr::defBaseLevel() 1 2.355e-05 2.99e-05 3.647e-05 0.00% Castro::post_timestep() 10 1.189e-05 1.696e-05 3.335e-05 0.00% FabArrayBase::CPC::define() 2 2.332e-05 2.716e-05 3.284e-05 0.00% Castro::enforce_speed_limit() 62 2.65e-05 2.825e-05 3.128e-05 0.00% Castro::expand_state() 10 1.905e-05 2.584e-05 3.047e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.23e-05 1.913e-05 2.626e-05 0.00% Castro::post_init() 1 1.394e-05 1.565e-05 1.882e-05 0.00% Amr::initSubcycle() 1 9.849e-06 1.388e-05 1.832e-05 0.00% Gravity::set_mass_offset() 10 9.509e-06 1.088e-05 1.259e-05 0.00% Gravity::swapTimeLevels() 10 7.967e-06 1.034e-05 1.252e-05 0.00% Castro::computeNewDt() 9 7.113e-06 8.679e-06 1.087e-05 0.00% Castro::create_source_corrector() 10 8.146e-06 9.015e-06 1.038e-05 0.00% Castro::FluxRegCrseInit 10 6.096e-06 7.559e-06 9.538e-06 0.00% Castro::retry_advance_ctu() 10 7.103e-06 7.776e-06 8.553e-06 0.00% Amr::initialInit() 1 1.279e-06 2.451e-06 7.541e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.801e-06 4.71e-06 5.864e-06 0.00% Castro::post_regrid() 1 1.637e-06 3.379e-06 5.04e-06 0.00% Amr::InitializeInit() 1 2.042e-06 2.665e-06 4.77e-06 0.00% Castro::computeInitialDt() 2 2.98e-06 3.688e-06 4.482e-06 0.00% Castro::FluxRegFineAdd() 10 1.956e-06 2.326e-06 2.909e-06 0.00% Amr::init() 1 1.735e-06 2.232e-06 2.715e-06 0.00% DistributionMapping::Distribute() 1 9.27e-07 1.201e-06 1.691e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.557 3.558 3.559 100.00% Amr::coarseTimeStep() 10 3.339 3.339 3.339 93.82% Amr::timeStep() 10 3.326 3.327 3.327 93.50% Castro::advance() 10 3.31 3.31 3.311 93.04% Castro::subcycle_advance_ctu() 10 3.221 3.228 3.234 90.89% Castro::do_advance_ctu() 10 3.221 3.228 3.234 90.88% Castro::construct_ctu_hydro_source() 10 2.458 2.462 2.467 69.32% Gravity::make_radial_gravity() 21 0.3072 0.3196 0.3286 9.23% AmrLevel::FillPatch() 41 0.1919 0.2129 0.2354 6.62% Gravity::get_new_grav_vector() 11 0.2174 0.2192 0.2204 6.19% Amr::init() 1 0.2067 0.2068 0.207 5.82% FillPatchIterator::Initialize 41 0.162 0.181 0.203 5.70% check_for_negative_density() 10 0.0205 0.08385 0.1977 5.55% Castro::construct_old_gravity() 10 0.1784 0.1887 0.1964 5.52% Gravity::get_old_grav_vector() 10 0.1778 0.1879 0.1953 5.49% Castro::construct_new_gravity() 10 0.1924 0.1936 0.1945 5.46% Amr::initialInit() 1 0.1928 0.1932 0.1937 5.44% Castro::initialize_do_advance() 10 0.1633 0.177 0.1932 5.43% Amr::InitializeInit() 1 0.06592 0.118 0.1639 4.61% Amr::defBaseLevel() 1 0.06592 0.118 0.1639 4.61% FillPatchIterator::FillFromLevel0() 41 0.1165 0.1363 0.1552 4.36% FillPatchSingleLevel 41 0.1163 0.1362 0.1551 4.36% Castro::initData() 1 0.05115 0.09941 0.1476 4.15% Castro::estTimeStep() 21 0.04009 0.07815 0.1381 3.88% Castro::expand_state() 10 0.1068 0.121 0.1364 3.83% Amr::FinalizeInit() 1 0.02974 0.07523 0.1276 3.59% Castro::clean_state() 62 0.117 0.1181 0.1203 3.38% FabArray::ParallelCopy() 41 0.08173 0.1027 0.117 3.29% Castro::do_old_sources() 10 0.09341 0.09782 0.1025 2.88% Castro::computeInitialDt() 2 0.002518 0.04832 0.1006 2.83% amrex::Copy() 193 0.07569 0.08096 0.09069 2.55% FabArray::setVal() 143 0.06723 0.07666 0.087 2.44% Castro::initialize_advance() 10 0.07233 0.07858 0.08521 2.39% Castro::do_new_sources() 10 0.06201 0.07029 0.0792 2.23% FabArray::ParallelCopy_finish() 41 0.03875 0.06006 0.07296 2.05% Castro::computeTemp() 63 0.06755 0.06876 0.07151 2.01% Castro::reset_internal_energy(MultiFab) 63 0.04751 0.04865 0.05074 1.43% Castro::reset_internal_energy(Fab) 1008 0.04721 0.04827 0.04976 1.40% FabArray::ParallelCopy_nowait() 41 0.04027 0.04252 0.04396 1.24% Castro::normalize_species() 62 0.04198 0.04271 0.04353 1.22% StateDataPhysBCFunct::() 41 0.03003 0.03345 0.03798 1.07% StateData::FillBoundary(geom) 41 0.02992 0.03334 0.03786 1.06% Castro::construct_new_source() 50 0.02951 0.03276 0.03635 1.02% Gravity::interpolate_monopole_grav() 21 0.02908 0.02974 0.03173 0.89% Castro::finalize_do_advance() 10 0.01242 0.0222 0.03055 0.86% Castro::construct_new_gravity_source() 10 0.02313 0.02628 0.02991 0.84% Castro::post_init() 1 0.02625 0.0265 0.02679 0.75% Amr::writePlotFile() 2 0.02077 0.02107 0.02142 0.60% Castro::post_timestep() 10 0.01576 0.01598 0.01621 0.46% Castro::apply_source_to_state() 20 0.01304 0.01405 0.01557 0.44% FabArray::Saxpy() 20 0.01299 0.014 0.01552 0.44% Castro::Castro() 1 0.009391 0.01194 0.01428 0.40% FabArray::setDomainBndry() 41 0.007267 0.0102 0.01277 0.36% VisMF::Write(FabArray) 2 0.008862 0.009423 0.01211 0.34% Castro::check_for_nan() 20 0.01002 0.01091 0.01154 0.32% MultiFab::contains_nan() 20 0.009995 0.01088 0.01152 0.32% Castro::construct_old_source() 50 0.008856 0.01018 0.01081 0.30% Castro::construct_old_gravity_source() 10 0.008794 0.0101 0.01072 0.30% Castro::initMFs() 1 0.006138 0.007937 0.009486 0.27% Castro::computeNewDt() 9 0.00905 0.009058 0.009067 0.25% AmrLevel::AmrLevel(dm) 1 0.00506 0.006508 0.007755 0.22% StateData::define() 4 0.005047 0.006489 0.007729 0.22% Castro::enforce_min_density() 62 0.007227 0.007409 0.007606 0.21% Castro::swap_state_time_levels() 10 0.003311 0.004423 0.005042 0.14% Castro::finalize_advance() 10 0.00295 0.003685 0.004433 0.12% Castro::buildMetrics() 1 0.001562 0.002034 0.002453 0.07% Castro::post_regrid() 1 0.00153 0.001672 0.001928 0.05% Amr::InitAmr() 1 0.0002571 0.0004076 0.0005037 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.21e-05 0.0001218 0.0002846 0.01% DistributionMapping::LeastUsedCPUs() 1 7e-06 0.0001159 0.0002777 0.01% Castro::enforce_consistent_e() 1 7.969e-05 9.109e-05 0.0001112 0.00% FabArrayBase::getCPC() 41 6.775e-05 8.064e-05 0.0001073 0.00% Amr::writeSmallPlotFile() 1 3.117e-05 4.31e-05 5.524e-05 0.00% FabArrayBase::CPC::define() 2 2.332e-05 2.716e-05 3.284e-05 0.00% Castro::enforce_speed_limit() 62 2.65e-05 2.825e-05 3.128e-05 0.00% Amr::initSubcycle() 1 9.849e-06 1.388e-05 1.832e-05 0.00% Gravity::set_mass_offset() 10 9.509e-06 1.088e-05 1.259e-05 0.00% Gravity::swapTimeLevels() 10 7.967e-06 1.034e-05 1.252e-05 0.00% Castro::create_source_corrector() 10 8.146e-06 9.015e-06 1.038e-05 0.00% Castro::FluxRegCrseInit 10 6.096e-06 7.559e-06 9.538e-06 0.00% Castro::retry_advance_ctu() 10 7.103e-06 7.776e-06 8.553e-06 0.00% Castro::FluxRegFineAdd() 10 1.956e-06 2.326e-06 2.909e-06 0.00% DistributionMapping::Distribute() 1 9.27e-07 1.201e-06 1.691e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 35 B 41 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.12-10-gecaa46d0be4b) finalized