Initializing AMReX (23.12-11-g064db4eaa599)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.12-11-g064db4eaa599) initialized Starting run at 06:37:12 UTC on 2023-12-13. Successfully read inputs file ... Castro git describe: 23.12-6-g9cf0cb6b3 AMReX git describe: 23.12-11-g064db4eaa Microphysics git describe: 23.12-1-gbdf6a18e reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.012358129 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.351922966 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.344357935 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.321863753 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.322135162 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.324140074 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.362212445 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.320813766 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.307296148 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.309242694 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.309902921 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007356444 seconds Ending run at 06:37:16 UTC on 2023-12-13. Run time = 3.491853175 Run time without initialization = 3.287458157 Average number of zones advanced per microsecond: 0.797 Average number of zones advanced per microsecond per rank: 0.100 TinyProfiler total time across processes [min...avg...max]: 3.491 ... 3.492 ... 3.492 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2980 2.3435 2.3943 68.57% Gravity::make_radial_gravity() 21 0.2797 0.2913 0.3081 8.82% Castro::initData() 1 0.0471 0.09707 0.1392 3.99% Castro::estTimeStep() 21 0.02242 0.07336 0.1237 3.54% check_for_negative_density() 10 0.01633 0.07277 0.121 3.47% FabArray::ParallelCopy_finish() 41 0.03834 0.06176 0.1128 3.23% amrex::Copy() 193 0.06363 0.08003 0.09705 2.78% FabArray::setVal() 143 0.05275 0.06763 0.07623 2.18% Castro::reset_internal_energy(Fab) 1008 0.04543 0.04724 0.04847 1.39% FabArray::ParallelCopy_nowait() 41 0.03322 0.04008 0.04307 1.23% Castro::normalize_species() 62 0.0413 0.04177 0.04238 1.21% StateData::FillBoundary(geom) 41 0.03061 0.0329 0.03726 1.07% FillPatchIterator::Initialize 41 0.02592 0.03157 0.03611 1.03% Gravity::interpolate_monopole_grav() 21 0.02738 0.02884 0.02957 0.85% Castro::construct_new_gravity_source() 10 0.02163 0.02401 0.02577 0.74% Castro::computeTemp() 63 0.01791 0.01919 0.01985 0.57% Castro::initialize_do_advance() 10 0.01086 0.01634 0.01763 0.50% Castro::initialize_advance() 10 0.003753 0.01086 0.01475 0.42% FabArray::Saxpy() 20 0.01022 0.01245 0.01359 0.39% FabArray::setDomainBndry() 41 0.006319 0.009742 0.01209 0.35% MultiFab::contains_nan() 20 0.009685 0.01062 0.01173 0.34% VisMF::Write(FabArray) 2 0.00852 0.009186 0.01158 0.33% Castro::construct_old_gravity_source() 10 0.006503 0.009265 0.01006 0.29% Amr::writePlotFile() 2 0.005672 0.008224 0.01001 0.29% Castro::initMFs() 1 0.006157 0.00796 0.00956 0.27% StateData::define() 4 0.005235 0.006663 0.007919 0.23% Castro::enforce_min_density() 62 0.00705 0.00737 0.007626 0.22% Castro::construct_new_source() 50 0.00575 0.0064 0.006837 0.20% main() 1 0.003912 0.004944 0.005241 0.15% Castro::swap_state_time_levels() 10 0.00303 0.004065 0.004427 0.13% Gravity::get_new_grav_vector() 11 0.002672 0.003467 0.003953 0.11% Amr::coarseTimeStep() 10 0.00111 0.002003 0.002813 0.08% Gravity::get_old_grav_vector() 10 0.001418 0.001894 0.002508 0.07% Castro::buildMetrics() 1 0.001491 0.001894 0.00224 0.06% Castro::finalize_do_advance() 10 0.0004901 0.001266 0.001611 0.05% AmrLevel::FillPatch() 41 0.0007148 0.0008874 0.001059 0.03% Amr::InitAmr() 1 0.0002851 0.0004233 0.0006562 0.02% Amr::timeStep() 10 0.0001382 0.0002249 0.0004999 0.01% DistributionMapping::LeastUsedCPUs() 1 7.558e-06 0.0002642 0.0004158 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002773 0.0003026 0.0003252 0.01% StateDataPhysBCFunct::() 41 9.817e-05 0.0001355 0.0001921 0.01% Castro::do_advance_ctu() 10 0.0001052 0.0001455 0.0001892 0.01% Castro::clean_state() 62 0.0001351 0.0001599 0.0001769 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001058 0.0001245 0.0001571 0.00% Castro::finalize_advance() 10 7.053e-05 9.64e-05 0.0001236 0.00% Castro::do_old_sources() 10 6.493e-05 9.293e-05 0.0001163 0.00% Castro::enforce_consistent_e() 1 7.65e-05 8.983e-05 0.0001077 0.00% FabArray::ParallelCopy() 41 7.642e-05 8.886e-05 0.0001057 0.00% Amr::writeSmallPlotFile() 1 3.721e-05 6.608e-05 9.328e-05 0.00% Castro::construct_old_source() 50 4.231e-05 7.398e-05 8.973e-05 0.00% Amr::FinalizeInit() 1 3.989e-06 1.553e-05 8.839e-05 0.00% Castro::do_new_sources() 10 5.374e-05 6.984e-05 8.481e-05 0.00% FillPatchSingleLevel 41 6.399e-05 6.981e-05 8.41e-05 0.00% FabArrayBase::getCPC() 41 4.252e-05 5.549e-05 8.358e-05 0.00% Castro::Castro() 1 5.561e-05 6.671e-05 7.696e-05 0.00% Castro::subcycle_advance_ctu() 10 3.873e-05 5.326e-05 6.412e-05 0.00% Castro::apply_source_to_state() 20 2.96e-05 4.855e-05 6.351e-05 0.00% Castro::enforce_speed_limit() 62 2.498e-05 3.187e-05 4.812e-05 0.00% Castro::advance() 10 3.47e-05 4.21e-05 4.785e-05 0.00% Castro::construct_new_gravity() 10 3.156e-05 3.583e-05 4.084e-05 0.00% Amr::defBaseLevel() 1 2.636e-05 3.45e-05 4.008e-05 0.00% Castro::construct_old_gravity() 10 3.126e-05 3.494e-05 3.82e-05 0.00% Castro::expand_state() 10 1.81e-05 2.573e-05 3.059e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.515e-05 2.178e-05 2.785e-05 0.00% FabArrayBase::CPC::define() 2 2.075e-05 2.427e-05 2.693e-05 0.00% Castro::check_for_nan() 20 2.26e-05 2.457e-05 2.592e-05 0.00% Castro::post_timestep() 10 1.258e-05 1.537e-05 1.99e-05 0.00% Amr::initSubcycle() 1 1.007e-05 1.454e-05 1.95e-05 0.00% Castro::post_init() 1 1.355e-05 1.526e-05 1.798e-05 0.00% Gravity::set_mass_offset() 10 8.481e-06 1.115e-05 1.298e-05 0.00% Gravity::swapTimeLevels() 10 5.286e-06 1.079e-05 1.257e-05 0.00% Castro::create_source_corrector() 10 6.948e-06 8.67e-06 1.052e-05 0.00% Castro::computeNewDt() 9 7.384e-06 8.224e-06 9.621e-06 0.00% Castro::FluxRegCrseInit 10 6.651e-06 8.286e-06 9.482e-06 0.00% Castro::retry_advance_ctu() 10 6.519e-06 6.889e-06 7.713e-06 0.00% Castro::post_regrid() 1 1.533e-06 3.103e-06 7.294e-06 0.00% Amr::InitializeInit() 1 2.022e-06 3.325e-06 7.283e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.932e-06 5.401e-06 6.926e-06 0.00% Castro::computeInitialDt() 2 2.798e-06 3.532e-06 4.917e-06 0.00% Castro::FluxRegFineAdd() 10 1.885e-06 2.391e-06 3.331e-06 0.00% Amr::init() 1 1.929e-06 2.3e-06 3.045e-06 0.00% Amr::initialInit() 1 1.383e-06 1.729e-06 1.945e-06 0.00% DistributionMapping::Distribute() 1 1.033e-06 1.385e-06 1.743e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.491 3.492 3.492 100.00% Amr::coarseTimeStep() 10 3.275 3.275 3.275 93.79% Amr::timeStep() 10 3.262 3.263 3.264 93.46% Castro::advance() 10 3.246 3.247 3.247 92.99% Castro::subcycle_advance_ctu() 10 3.168 3.173 3.192 91.43% Castro::do_advance_ctu() 10 3.168 3.173 3.192 91.42% Castro::construct_ctu_hydro_source() 10 2.431 2.437 2.44 69.88% Gravity::make_radial_gravity() 21 0.2955 0.3072 0.3212 9.20% AmrLevel::FillPatch() 41 0.1841 0.2071 0.2331 6.67% FillPatchIterator::Initialize 41 0.1533 0.1765 0.2093 5.99% Gravity::get_new_grav_vector() 11 0.2033 0.2037 0.204 5.84% Amr::init() 1 0.2036 0.2038 0.204 5.84% Castro::construct_old_gravity() 10 0.1829 0.1914 0.2025 5.80% Gravity::get_old_grav_vector() 10 0.1823 0.1908 0.2019 5.78% Amr::initialInit() 1 0.191 0.1912 0.1914 5.48% Castro::construct_new_gravity() 10 0.1806 0.1814 0.1821 5.22% FillPatchIterator::FillFromLevel0() 41 0.1165 0.1352 0.1771 5.07% FillPatchSingleLevel 41 0.1164 0.1351 0.177 5.07% Castro::initialize_do_advance() 10 0.1541 0.1615 0.1691 4.84% Amr::InitializeInit() 1 0.06586 0.1196 0.1652 4.73% Amr::defBaseLevel() 1 0.06586 0.1196 0.1652 4.73% FabArray::ParallelCopy() 41 0.08155 0.102 0.1462 4.19% Castro::initData() 1 0.05072 0.1008 0.1431 4.10% Amr::FinalizeInit() 1 0.02606 0.07156 0.1254 3.59% Castro::estTimeStep() 21 0.02242 0.07336 0.1237 3.54% Castro::expand_state() 10 0.1004 0.1084 0.1229 3.52% check_for_negative_density() 10 0.01633 0.07277 0.121 3.47% Castro::clean_state() 62 0.1122 0.1152 0.1169 3.35% FabArray::ParallelCopy_finish() 41 0.03834 0.06176 0.1128 3.23% Castro::do_old_sources() 10 0.08799 0.1023 0.1098 3.14% Castro::computeInitialDt() 2 0.002163 0.04784 0.1018 2.91% amrex::Copy() 193 0.06363 0.08003 0.09705 2.78% FabArray::setVal() 143 0.05275 0.06763 0.07623 2.18% Castro::initialize_advance() 10 0.05001 0.07004 0.07566 2.17% Castro::computeTemp() 63 0.06364 0.06673 0.06861 1.96% Castro::do_new_sources() 10 0.0602 0.06343 0.06783 1.94% Castro::reset_internal_energy(MultiFab) 63 0.04573 0.04754 0.04877 1.40% Castro::reset_internal_energy(Fab) 1008 0.04543 0.04724 0.04847 1.39% FabArray::ParallelCopy_nowait() 41 0.03329 0.04016 0.04314 1.24% Castro::normalize_species() 62 0.0413 0.04177 0.04238 1.21% StateDataPhysBCFunct::() 41 0.03071 0.03304 0.03738 1.07% StateData::FillBoundary(geom) 41 0.03061 0.0329 0.03726 1.07% Castro::construct_new_source() 50 0.02738 0.03041 0.03258 0.93% Gravity::interpolate_monopole_grav() 21 0.02738 0.02884 0.02957 0.85% Castro::construct_new_gravity_source() 10 0.02163 0.02401 0.02577 0.74% Castro::post_init() 1 0.02305 0.0233 0.02344 0.67% Castro::finalize_do_advance() 10 0.01257 0.01766 0.02172 0.62% Amr::writePlotFile() 2 0.01986 0.02003 0.02032 0.58% Castro::post_timestep() 10 0.01499 0.01577 0.01634 0.47% Castro::Castro() 1 0.009421 0.01186 0.01415 0.41% Castro::apply_source_to_state() 20 0.01024 0.0125 0.01365 0.39% FabArray::Saxpy() 20 0.01022 0.01245 0.01359 0.39% FabArray::setDomainBndry() 41 0.006319 0.009742 0.01209 0.35% Castro::check_for_nan() 20 0.009709 0.01065 0.01175 0.34% MultiFab::contains_nan() 20 0.009685 0.01062 0.01173 0.34% VisMF::Write(FabArray) 2 0.00852 0.009186 0.01158 0.33% Castro::construct_old_source() 50 0.006545 0.009339 0.01015 0.29% Castro::construct_old_gravity_source() 10 0.006503 0.009265 0.01006 0.29% Castro::initMFs() 1 0.006157 0.00796 0.00956 0.27% Castro::computeNewDt() 9 0.009128 0.009136 0.009148 0.26% AmrLevel::AmrLevel(dm) 1 0.00525 0.006685 0.007947 0.23% StateData::define() 4 0.005235 0.006663 0.007919 0.23% Castro::enforce_min_density() 62 0.00705 0.00737 0.007626 0.22% Castro::swap_state_time_levels() 10 0.00303 0.004065 0.004427 0.13% Castro::finalize_advance() 10 0.003108 0.003344 0.003539 0.10% Castro::buildMetrics() 1 0.001602 0.002064 0.002462 0.07% Castro::post_regrid() 1 0.001515 0.001552 0.001591 0.05% Amr::InitAmr() 1 0.0002952 0.0004379 0.0006757 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.279e-05 0.000271 0.000424 0.01% DistributionMapping::LeastUsedCPUs() 1 7.558e-06 0.0002642 0.0004158 0.01% Castro::enforce_consistent_e() 1 7.65e-05 8.983e-05 0.0001077 0.00% FabArrayBase::getCPC() 41 6.582e-05 7.975e-05 0.0001058 0.00% Amr::writeSmallPlotFile() 1 3.721e-05 6.608e-05 9.328e-05 0.00% Castro::enforce_speed_limit() 62 2.498e-05 3.187e-05 4.812e-05 0.00% FabArrayBase::CPC::define() 2 2.075e-05 2.427e-05 2.693e-05 0.00% Amr::initSubcycle() 1 1.007e-05 1.454e-05 1.95e-05 0.00% Gravity::set_mass_offset() 10 8.481e-06 1.115e-05 1.298e-05 0.00% Gravity::swapTimeLevels() 10 5.286e-06 1.079e-05 1.257e-05 0.00% Castro::create_source_corrector() 10 6.948e-06 8.67e-06 1.052e-05 0.00% Castro::FluxRegCrseInit 10 6.651e-06 8.286e-06 9.482e-06 0.00% Castro::retry_advance_ctu() 10 6.519e-06 6.889e-06 7.713e-06 0.00% Castro::FluxRegFineAdd() 10 1.885e-06 2.391e-06 3.331e-06 0.00% DistributionMapping::Distribute() 1 1.033e-06 1.385e-06 1.743e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 35 B 40 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.12-11-g064db4eaa599) finalized