Initializing AMReX (23.12-13-gb903e8896afb)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.12-13-gb903e8896afb) initialized Starting run at 06:20:50 UTC on 2023-12-14. Successfully read inputs file ... Castro git describe: 23.12-6-g9cf0cb6b3 AMReX git describe: 23.12-13-gb903e8896 Microphysics git describe: 23.12-1-gbdf6a18e reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014395715 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.361915887 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.36045786 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.362246556 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.333992713 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.35557916 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.337904745 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.31068161 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.309567541 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.310443139 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.311178423 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007543252 seconds Ending run at 06:20:54 UTC on 2023-12-14. Run time = 3.551434975 Run time without initialization = 3.366904538 Average number of zones advanced per microsecond: 0.779 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.551 ... 3.551 ... 3.551 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3282 2.3771 2.4239 68.25% Gravity::make_radial_gravity() 21 0.2982 0.3037 0.3161 8.90% check_for_negative_density() 10 0.04264 0.0922 0.1438 4.05% Castro::initData() 1 0.05694 0.0884 0.1203 3.39% Castro::estTimeStep() 21 0.02264 0.06549 0.1004 2.83% amrex::Copy() 193 0.06465 0.07854 0.08903 2.51% FabArray::ParallelCopy_finish() 41 0.03657 0.05856 0.08799 2.48% FabArray::setVal() 143 0.06452 0.07387 0.08693 2.45% Castro::reset_internal_energy(Fab) 1008 0.04556 0.04754 0.04864 1.37% Castro::normalize_species() 62 0.04162 0.04295 0.04441 1.25% FabArray::ParallelCopy_nowait() 41 0.03503 0.04122 0.0438 1.23% FillPatchIterator::Initialize 41 0.02735 0.03346 0.03719 1.05% StateData::FillBoundary(geom) 41 0.03064 0.03277 0.03547 1.00% Gravity::interpolate_monopole_grav() 21 0.02835 0.0299 0.03205 0.90% Castro::construct_new_gravity_source() 10 0.02245 0.02561 0.03059 0.86% Castro::initialize_do_advance() 10 0.01125 0.01774 0.02166 0.61% Castro::computeTemp() 63 0.01825 0.01972 0.02088 0.59% Castro::initialize_advance() 10 0.009638 0.01163 0.01442 0.41% FabArray::Saxpy() 20 0.01032 0.01296 0.014 0.39% FabArray::setDomainBndry() 41 0.006715 0.009916 0.01214 0.34% VisMF::Write(FabArray) 2 0.008399 0.009207 0.0121 0.34% MultiFab::contains_nan() 20 0.009868 0.01068 0.01179 0.33% Amr::writePlotFile() 2 0.007567 0.00982 0.01086 0.31% Castro::construct_old_gravity_source() 10 0.007247 0.009499 0.01004 0.28% Castro::enforce_min_density() 62 0.007105 0.00734 0.007679 0.22% Castro::initMFs() 1 0.006291 0.006791 0.007523 0.21% Castro::construct_new_source() 50 0.005763 0.006162 0.006407 0.18% StateData::define() 4 0.005202 0.00551 0.005897 0.17% main() 1 0.004056 0.00435 0.00465 0.13% Castro::swap_state_time_levels() 10 0.00313 0.004077 0.004401 0.12% Gravity::get_new_grav_vector() 11 0.002966 0.003704 0.004066 0.11% Amr::coarseTimeStep() 10 0.001235 0.002424 0.003155 0.09% Gravity::get_old_grav_vector() 10 0.001588 0.002032 0.002389 0.07% Castro::buildMetrics() 1 0.001463 0.001586 0.001722 0.05% Castro::finalize_do_advance() 10 0.0004701 0.001153 0.001489 0.04% AmrLevel::FillPatch() 41 0.0007247 0.0009147 0.001198 0.03% Amr::InitAmr() 1 0.000264 0.0002972 0.000458 0.01% Amr::timeStep() 10 0.0001405 0.0002024 0.0003679 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000283 0.0002978 0.0003174 0.01% Castro::Castro() 1 5.564e-05 8.597e-05 0.0002024 0.01% DistributionMapping::LeastUsedCPUs() 1 6.882e-06 0.000167 0.0001966 0.01% Castro::do_advance_ctu() 10 0.0001307 0.0001485 0.0001842 0.01% Castro::clean_state() 62 0.0001434 0.0001518 0.0001799 0.01% StateDataPhysBCFunct::() 41 0.0001006 0.0001183 0.0001341 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001081 0.000117 0.0001265 0.00% Castro::enforce_consistent_e() 1 8.108e-05 9.151e-05 0.0001066 0.00% Castro::do_old_sources() 10 7.166e-05 8.834e-05 0.0001009 0.00% Castro::finalize_advance() 10 7.593e-05 8.655e-05 9.724e-05 0.00% FabArray::ParallelCopy() 41 6.99e-05 8.037e-05 9.339e-05 0.00% Castro::construct_old_source() 50 6.517e-05 7.815e-05 9.317e-05 0.00% FillPatchSingleLevel 41 6.125e-05 7.214e-05 8.427e-05 0.00% FabArrayBase::getCPC() 41 4.245e-05 5.585e-05 7.599e-05 0.00% Amr::FinalizeInit() 1 3.79e-06 1.37e-05 7.556e-05 0.00% Castro::do_new_sources() 10 5.209e-05 5.893e-05 6.741e-05 0.00% Castro::advance() 10 3.419e-05 4.556e-05 6.657e-05 0.00% Amr::writeSmallPlotFile() 1 3.145e-05 4.638e-05 6.63e-05 0.00% Castro::subcycle_advance_ctu() 10 3.721e-05 4.606e-05 5.268e-05 0.00% Castro::apply_source_to_state() 20 3.524e-05 4.481e-05 5.226e-05 0.00% FabArrayBase::CPC::define() 2 2.22e-05 2.722e-05 4.219e-05 0.00% Amr::defBaseLevel() 1 2.427e-05 3.383e-05 4.184e-05 0.00% Castro::construct_new_gravity() 10 3.155e-05 3.48e-05 4.052e-05 0.00% Castro::construct_old_gravity() 10 3.066e-05 3.484e-05 3.946e-05 0.00% Castro::enforce_speed_limit() 62 2.713e-05 2.972e-05 3.563e-05 0.00% Castro::check_for_nan() 20 2.132e-05 2.413e-05 3.139e-05 0.00% Castro::post_timestep() 10 1.21e-05 1.816e-05 2.958e-05 0.00% Castro::expand_state() 10 2.04e-05 2.432e-05 2.754e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.636e-05 2.168e-05 2.697e-05 0.00% Castro::post_init() 1 1.278e-05 1.476e-05 1.735e-05 0.00% Gravity::set_mass_offset() 10 8.146e-06 1.006e-05 1.288e-05 0.00% Amr::initSubcycle() 1 1.011e-05 1.084e-05 1.183e-05 0.00% Gravity::swapTimeLevels() 10 8.217e-06 1e-05 1.177e-05 0.00% Castro::computeNewDt() 9 7.928e-06 9.012e-06 1.087e-05 0.00% Castro::create_source_corrector() 10 6.404e-06 8.653e-06 9.761e-06 0.00% Castro::retry_advance_ctu() 10 6.501e-06 7.423e-06 9.013e-06 0.00% Castro::FluxRegCrseInit 10 6.67e-06 7.567e-06 8.699e-06 0.00% Castro::FluxRegFineAdd() 10 1.951e-06 3.141e-06 8.21e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.033e-06 5.514e-06 6.686e-06 0.00% Amr::init() 1 2.01e-06 2.77e-06 6.623e-06 0.00% Amr::InitializeInit() 1 1.782e-06 2.393e-06 5.292e-06 0.00% Castro::post_regrid() 1 2.172e-06 3.077e-06 4.637e-06 0.00% Castro::computeInitialDt() 2 3.08e-06 3.906e-06 4.583e-06 0.00% Amr::initialInit() 1 1.288e-06 1.691e-06 2.302e-06 0.00% DistributionMapping::Distribute() 1 9.71e-07 1.097e-06 1.184e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.551 3.551 3.551 100.00% Amr::coarseTimeStep() 10 3.355 3.355 3.355 94.46% Amr::timeStep() 10 3.341 3.342 3.343 94.13% Castro::advance() 10 3.325 3.326 3.327 93.68% Castro::subcycle_advance_ctu() 10 3.237 3.246 3.253 91.60% Castro::do_advance_ctu() 10 3.237 3.246 3.253 91.59% Castro::construct_ctu_hydro_source() 10 2.487 2.49 2.493 70.19% Gravity::make_radial_gravity() 21 0.3153 0.3203 0.3288 9.26% AmrLevel::FillPatch() 41 0.1893 0.2076 0.2225 6.26% Gravity::get_new_grav_vector() 11 0.2161 0.219 0.2205 6.21% Castro::construct_old_gravity() 10 0.1847 0.1895 0.1963 5.53% Gravity::get_old_grav_vector() 10 0.1841 0.1888 0.1957 5.51% Castro::construct_new_gravity() 10 0.1915 0.1929 0.1941 5.46% FillPatchIterator::Initialize 41 0.1584 0.1764 0.1894 5.33% Amr::init() 1 0.1839 0.1841 0.1841 5.18% Castro::initialize_do_advance() 10 0.1627 0.1715 0.1821 5.13% Amr::initialInit() 1 0.1693 0.17 0.1705 4.80% FillPatchIterator::FillFromLevel0() 41 0.1114 0.133 0.1542 4.34% FillPatchSingleLevel 41 0.1112 0.1329 0.1541 4.34% check_for_negative_density() 10 0.04264 0.0922 0.1438 4.05% Amr::InitializeInit() 1 0.0786 0.109 0.1403 3.95% Amr::defBaseLevel() 1 0.0786 0.109 0.1403 3.95% Castro::expand_state() 10 0.1038 0.1165 0.1279 3.60% Castro::initData() 1 0.0609 0.09245 0.1246 3.51% FabArray::ParallelCopy() 41 0.07876 0.09994 0.1232 3.47% Castro::clean_state() 62 0.1146 0.1171 0.121 3.41% Castro::estTimeStep() 21 0.02264 0.06549 0.1004 2.83% Castro::do_old_sources() 10 0.09122 0.09456 0.0971 2.73% Amr::FinalizeInit() 1 0.02937 0.06104 0.0917 2.58% amrex::Copy() 193 0.06465 0.07854 0.08903 2.51% FabArray::ParallelCopy_finish() 41 0.03657 0.05856 0.08799 2.48% FabArray::setVal() 143 0.06452 0.07387 0.08693 2.45% Castro::initialize_advance() 10 0.06921 0.0763 0.08576 2.41% Castro::do_new_sources() 10 0.05966 0.06718 0.07889 2.22% Castro::computeTemp() 63 0.06411 0.06756 0.06984 1.97% Castro::computeInitialDt() 2 0.002288 0.03355 0.06392 1.80% Castro::reset_internal_energy(MultiFab) 63 0.04585 0.04784 0.04896 1.38% Castro::reset_internal_energy(Fab) 1008 0.04556 0.04754 0.04864 1.37% Castro::normalize_species() 62 0.04162 0.04295 0.04441 1.25% FabArray::ParallelCopy_nowait() 41 0.03515 0.0413 0.04386 1.24% Castro::construct_new_source() 50 0.02864 0.03177 0.03673 1.03% StateDataPhysBCFunct::() 41 0.03076 0.03288 0.03559 1.00% StateData::FillBoundary(geom) 41 0.03064 0.03277 0.03547 1.00% Gravity::interpolate_monopole_grav() 21 0.02835 0.0299 0.03205 0.90% Castro::finalize_do_advance() 10 0.01217 0.02392 0.03189 0.90% Castro::construct_new_gravity_source() 10 0.02245 0.02561 0.03059 0.86% Castro::post_init() 1 0.02622 0.02708 0.02767 0.78% Amr::writePlotFile() 2 0.02122 0.0217 0.0222 0.63% Castro::post_timestep() 10 0.01518 0.01592 0.01619 0.46% Castro::apply_source_to_state() 20 0.01037 0.01301 0.01405 0.40% FabArray::Saxpy() 20 0.01032 0.01296 0.014 0.39% FabArray::setDomainBndry() 41 0.006715 0.009916 0.01214 0.34% VisMF::Write(FabArray) 2 0.008399 0.009207 0.0121 0.34% Castro::check_for_nan() 20 0.0099 0.0107 0.01181 0.33% MultiFab::contains_nan() 20 0.009868 0.01068 0.01179 0.33% Castro::Castro() 1 0.009936 0.01077 0.01157 0.33% Castro::construct_old_source() 50 0.007313 0.009577 0.01013 0.29% Castro::construct_old_gravity_source() 10 0.007247 0.009499 0.01004 0.28% Castro::computeNewDt() 9 0.009174 0.009181 0.009192 0.26% Castro::enforce_min_density() 62 0.007105 0.00734 0.007679 0.22% Castro::initMFs() 1 0.006291 0.006791 0.007523 0.21% AmrLevel::AmrLevel(dm) 1 0.005222 0.005532 0.005913 0.17% StateData::define() 4 0.005202 0.00551 0.005897 0.17% Castro::finalize_advance() 10 0.002919 0.003706 0.004548 0.13% Castro::swap_state_time_levels() 10 0.00313 0.004077 0.004401 0.12% Castro::post_regrid() 1 0.001501 0.001664 0.001961 0.06% Castro::buildMetrics() 1 0.001575 0.00172 0.001874 0.05% Amr::InitAmr() 1 0.0002744 0.000308 0.0004698 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.247e-05 0.0001736 0.0002041 0.01% DistributionMapping::LeastUsedCPUs() 1 6.882e-06 0.000167 0.0001966 0.01% FabArrayBase::getCPC() 41 6.578e-05 8.307e-05 0.0001157 0.00% Castro::enforce_consistent_e() 1 8.108e-05 9.151e-05 0.0001066 0.00% Amr::writeSmallPlotFile() 1 3.145e-05 4.638e-05 6.63e-05 0.00% FabArrayBase::CPC::define() 2 2.22e-05 2.722e-05 4.219e-05 0.00% Castro::enforce_speed_limit() 62 2.713e-05 2.972e-05 3.563e-05 0.00% Gravity::set_mass_offset() 10 8.146e-06 1.006e-05 1.288e-05 0.00% Amr::initSubcycle() 1 1.011e-05 1.084e-05 1.183e-05 0.00% Gravity::swapTimeLevels() 10 8.217e-06 1e-05 1.177e-05 0.00% Castro::create_source_corrector() 10 6.404e-06 8.653e-06 9.761e-06 0.00% Castro::retry_advance_ctu() 10 6.501e-06 7.423e-06 9.013e-06 0.00% Castro::FluxRegCrseInit 10 6.67e-06 7.567e-06 8.699e-06 0.00% Castro::FluxRegFineAdd() 10 1.951e-06 3.141e-06 8.21e-06 0.00% DistributionMapping::Distribute() 1 9.71e-07 1.097e-06 1.184e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 32 B 37 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.12-13-gb903e8896afb) finalized