Initializing AMReX (23.12-18-g3497f016d920)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.12-18-g3497f016d920) initialized Starting run at 02:38:39 UTC on 2023-12-18. Successfully read inputs file ... Castro git describe: 23.12-38-g2543d6c45 AMReX git describe: 23.12-18-g3497f016d Microphysics git describe: 23.12-3-g96f4c7ef reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013690552 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.360214217 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.359852412 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.341740729 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.341406666 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.349992235 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.353924807 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.309135708 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.311615896 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.315264973 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.309851278 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007487077 seconds Ending run at 02:38:43 UTC on 2023-12-18. Run time = 3.547202789 Run time without initialization = 3.366249637 Average number of zones advanced per microsecond: 0.779 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.547 ... 3.547 ... 3.547 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2866 2.3802 2.4361 68.68% Gravity::make_radial_gravity() 21 0.2869 0.2947 0.3061 8.63% check_for_negative_density() 10 0.0257 0.0841 0.1801 5.08% Castro::initData() 1 0.04871 0.08494 0.1194 3.37% Castro::estTimeStep() 21 0.02412 0.0724 0.1125 3.17% amrex::Copy() 193 0.06724 0.07877 0.08943 2.52% FabArray::setVal() 143 0.06617 0.07559 0.08872 2.50% FabArray::ParallelCopy_finish() 41 0.0369 0.06247 0.08788 2.48% Castro::reset_internal_energy(Fab) 1008 0.04343 0.04765 0.05223 1.47% FabArray::ParallelCopy_nowait() 41 0.03391 0.04084 0.04334 1.22% Castro::normalize_species() 62 0.04091 0.04188 0.04321 1.22% FillPatchIterator::Initialize 41 0.02698 0.03439 0.03987 1.12% StateData::FillBoundary(geom) 41 0.02952 0.03258 0.03905 1.10% Gravity::interpolate_monopole_grav() 21 0.02792 0.02901 0.02966 0.84% Castro::construct_new_gravity_source() 10 0.02201 0.02453 0.02915 0.82% Castro::initialize_do_advance() 10 0.01199 0.0188 0.02425 0.68% Castro::computeTemp() 63 0.01682 0.01947 0.02164 0.61% Castro::initialize_advance() 10 0.009696 0.01211 0.01493 0.42% FabArray::Saxpy() 20 0.01038 0.01258 0.01346 0.38% FabArray::setDomainBndry() 41 0.006969 0.01019 0.01263 0.36% MultiFab::contains_nan() 20 0.00951 0.0109 0.01202 0.34% VisMF::Write(FabArray) 2 0.009053 0.009446 0.01178 0.33% Castro::construct_new_source() 50 0.005686 0.006851 0.01095 0.31% Castro::construct_old_gravity_source() 10 0.006367 0.009134 0.00992 0.28% Amr::writePlotFile() 2 0.006771 0.008892 0.009324 0.26% Amr::coarseTimeStep() 10 0.002438 0.006179 0.00862 0.24% Castro::enforce_min_density() 62 0.005695 0.006109 0.006645 0.19% Castro::initMFs() 1 0.00634 0.006363 0.006408 0.18% StateData::define() 4 0.005194 0.005213 0.005235 0.15% main() 1 0.004243 0.00481 0.005059 0.14% Castro::swap_state_time_levels() 10 0.003131 0.004165 0.00441 0.12% Gravity::get_new_grav_vector() 11 0.002848 0.003401 0.003966 0.11% Gravity::get_old_grav_vector() 10 0.001567 0.002002 0.002276 0.06% Castro::finalize_do_advance() 10 0.0005763 0.001289 0.001669 0.05% Castro::buildMetrics() 1 0.001482 0.001496 0.001518 0.04% AmrLevel::FillPatch() 41 0.0008387 0.0009361 0.001227 0.03% Amr::InitAmr() 1 0.0002695 0.0002935 0.0004135 0.01% Amr::timeStep() 10 0.0001649 0.0002057 0.0003349 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002685 0.0002906 0.0003215 0.01% Castro::clean_state() 62 0.0001416 0.0001507 0.0001807 0.01% Castro::do_advance_ctu() 10 0.0001111 0.0001326 0.0001628 0.00% Castro::Castro() 1 6.167e-05 8.242e-05 0.0001615 0.00% DistributionMapping::LeastUsedCPUs() 1 7.185e-06 0.0001237 0.000143 0.00% StateDataPhysBCFunct::() 41 8.652e-05 0.0001043 0.0001269 0.00% FillPatchIterator::FillFromLevel0() 41 9.618e-05 0.0001088 0.0001195 0.00% Castro::finalize_advance() 10 7.342e-05 9.475e-05 0.0001066 0.00% Castro::do_old_sources() 10 6.936e-05 8.747e-05 0.0001041 0.00% Castro::enforce_consistent_e() 1 8.174e-05 8.759e-05 9.736e-05 0.00% Castro::construct_old_source() 50 4.821e-05 7.118e-05 9.537e-05 0.00% Castro::do_new_sources() 10 5.107e-05 6.975e-05 8.395e-05 0.00% FabArray::ParallelCopy() 41 6.692e-05 7.338e-05 8.189e-05 0.00% FillPatchSingleLevel 41 5.619e-05 6.886e-05 7.908e-05 0.00% Amr::FinalizeInit() 1 4.957e-06 1.45e-05 7.606e-05 0.00% Castro::advance() 10 3.397e-05 5.16e-05 7.557e-05 0.00% Castro::subcycle_advance_ctu() 10 3.79e-05 5.218e-05 6.828e-05 0.00% Amr::writeSmallPlotFile() 1 3.054e-05 4.746e-05 6.293e-05 0.00% Castro::apply_source_to_state() 20 3.43e-05 4.532e-05 5.632e-05 0.00% Castro::construct_new_gravity() 10 3.033e-05 3.796e-05 5.274e-05 0.00% Castro::retry_advance_ctu() 10 7.012e-06 2.653e-05 5.259e-05 0.00% FabArrayBase::getCPC() 41 3.885e-05 4.547e-05 5.22e-05 0.00% Castro::construct_old_gravity() 10 3.158e-05 3.726e-05 4.237e-05 0.00% Amr::defBaseLevel() 1 2.386e-05 3.393e-05 4.204e-05 0.00% FabArrayBase::CPC::define() 2 2.339e-05 2.558e-05 3.316e-05 0.00% Castro::expand_state() 10 2.051e-05 2.475e-05 3.101e-05 0.00% Castro::enforce_speed_limit() 62 2.363e-05 2.671e-05 2.966e-05 0.00% Castro::post_init() 1 1.471e-05 1.77e-05 2.952e-05 0.00% Castro::check_for_nan() 20 2.174e-05 2.394e-05 2.576e-05 0.00% Castro::post_timestep() 10 1.303e-05 1.65e-05 2.487e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.216e-05 1.681e-05 2.145e-05 0.00% Castro::FluxRegCrseInit 10 5.759e-06 1.089e-05 1.843e-05 0.00% Gravity::set_mass_offset() 10 9.186e-06 1.168e-05 1.823e-05 0.00% Gravity::swapTimeLevels() 10 7.416e-06 9.949e-06 1.248e-05 0.00% Castro::create_source_corrector() 10 6.794e-06 8.992e-06 1.047e-05 0.00% Amr::initSubcycle() 1 9.494e-06 9.901e-06 1.035e-05 0.00% Castro::computeNewDt() 9 7.645e-06 8.554e-06 9.528e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.701e-06 5.229e-06 7.291e-06 0.00% Amr::InitializeInit() 1 1.764e-06 2.345e-06 5.017e-06 0.00% Castro::computeInitialDt() 2 3.875e-06 4.198e-06 4.683e-06 0.00% Castro::post_regrid() 1 1.972e-06 3.454e-06 4.576e-06 0.00% Amr::init() 1 2.025e-06 2.671e-06 4.567e-06 0.00% Castro::FluxRegFineAdd() 10 2.143e-06 2.317e-06 2.585e-06 0.00% Amr::initialInit() 1 1.501e-06 1.847e-06 2.124e-06 0.00% DistributionMapping::Distribute() 1 8.12e-07 9.047e-07 1.04e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.546 3.547 3.547 100.00% Amr::coarseTimeStep() 10 3.354 3.354 3.354 94.55% Amr::timeStep() 10 3.334 3.337 3.341 94.17% Castro::advance() 10 3.319 3.321 3.322 93.64% Castro::subcycle_advance_ctu() 10 3.231 3.239 3.247 91.55% Castro::do_advance_ctu() 10 3.231 3.239 3.247 91.54% Castro::construct_ctu_hydro_source() 10 2.482 2.485 2.488 70.14% Gravity::make_radial_gravity() 21 0.3036 0.3108 0.3212 9.05% AmrLevel::FillPatch() 41 0.1862 0.2114 0.2304 6.50% Gravity::get_new_grav_vector() 11 0.2069 0.2089 0.2102 5.93% FillPatchIterator::Initialize 41 0.1583 0.1809 0.1994 5.62% Castro::construct_old_gravity() 10 0.1797 0.186 0.1935 5.45% Gravity::get_old_grav_vector() 10 0.1791 0.1852 0.193 5.44% Castro::initialize_do_advance() 10 0.1657 0.1781 0.1903 5.36% Castro::construct_new_gravity() 10 0.1843 0.1856 0.1865 5.26% Amr::init() 1 0.1804 0.1805 0.1805 5.09% check_for_negative_density() 10 0.0257 0.0841 0.1801 5.08% Amr::initialInit() 1 0.1665 0.1669 0.1671 4.71% FillPatchIterator::FillFromLevel0() 41 0.1125 0.1363 0.154 4.34% FillPatchSingleLevel 41 0.1124 0.1362 0.1539 4.34% Amr::InitializeInit() 1 0.06922 0.1056 0.1401 3.95% Amr::defBaseLevel() 1 0.06921 0.1056 0.1401 3.95% Castro::expand_state() 10 0.1069 0.1225 0.136 3.84% Castro::initData() 1 0.05285 0.0891 0.1236 3.48% Castro::clean_state() 62 0.1076 0.1147 0.1232 3.47% FabArray::ParallelCopy() 41 0.07866 0.1035 0.1219 3.44% Castro::estTimeStep() 21 0.02412 0.0724 0.1125 3.17% Castro::do_old_sources() 10 0.09173 0.09599 0.1005 2.83% Amr::FinalizeInit() 1 0.02694 0.06129 0.09729 2.74% amrex::Copy() 193 0.06724 0.07877 0.08943 2.52% FabArray::setVal() 143 0.06617 0.07559 0.08872 2.50% FabArray::ParallelCopy_finish() 41 0.0369 0.06247 0.08788 2.48% Castro::initialize_advance() 10 0.06913 0.07712 0.08545 2.41% Castro::do_new_sources() 10 0.05976 0.06513 0.07834 2.21% Castro::computeTemp() 63 0.06052 0.06741 0.07415 2.09% Castro::computeInitialDt() 2 0.002316 0.0368 0.07305 2.06% Castro::reset_internal_energy(MultiFab) 63 0.0437 0.04794 0.05252 1.48% Castro::reset_internal_energy(Fab) 1008 0.04343 0.04765 0.05223 1.47% FabArray::ParallelCopy_nowait() 41 0.03398 0.04091 0.04341 1.22% Castro::normalize_species() 62 0.04091 0.04188 0.04321 1.22% Castro::construct_new_source() 50 0.0277 0.03138 0.0401 1.13% StateDataPhysBCFunct::() 41 0.02961 0.03268 0.03917 1.10% StateData::FillBoundary(geom) 41 0.02952 0.03258 0.03905 1.10% Castro::finalize_do_advance() 10 0.01369 0.02746 0.03349 0.94% Gravity::interpolate_monopole_grav() 21 0.02792 0.02901 0.02966 0.84% Castro::construct_new_gravity_source() 10 0.02201 0.02453 0.02915 0.82% Castro::post_init() 1 0.02381 0.02421 0.02436 0.69% Amr::writePlotFile() 2 0.02102 0.02119 0.02145 0.60% Castro::post_timestep() 10 0.01458 0.01613 0.01886 0.53% Castro::apply_source_to_state() 20 0.01042 0.01262 0.01351 0.38% FabArray::Saxpy() 20 0.01038 0.01258 0.01346 0.38% FabArray::setDomainBndry() 41 0.006969 0.01019 0.01263 0.36% Castro::check_for_nan() 20 0.009535 0.01092 0.01204 0.34% MultiFab::contains_nan() 20 0.00951 0.0109 0.01202 0.34% VisMF::Write(FabArray) 2 0.009053 0.009446 0.01178 0.33% Castro::Castro() 1 0.01105 0.0111 0.01116 0.31% Castro::construct_old_source() 50 0.006415 0.009205 0.009997 0.28% Castro::construct_old_gravity_source() 10 0.006367 0.009134 0.00992 0.28% Castro::computeNewDt() 9 0.009444 0.009448 0.009452 0.27% Castro::enforce_min_density() 62 0.005695 0.006109 0.006645 0.19% Castro::initMFs() 1 0.00634 0.006363 0.006408 0.18% Castro::finalize_advance() 10 0.002957 0.00422 0.005748 0.16% AmrLevel::AmrLevel(dm) 1 0.005212 0.005229 0.005248 0.15% StateData::define() 4 0.005194 0.005213 0.005235 0.15% Castro::swap_state_time_levels() 10 0.003131 0.004165 0.00441 0.12% Castro::buildMetrics() 1 0.001613 0.001632 0.001651 0.05% Castro::post_regrid() 1 0.001473 0.00157 0.001648 0.05% Amr::InitAmr() 1 0.0002798 0.0003034 0.0004231 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.178e-05 0.0001298 0.0001499 0.00% DistributionMapping::LeastUsedCPUs() 1 7.185e-06 0.0001237 0.000143 0.00% Castro::enforce_consistent_e() 1 8.174e-05 8.759e-05 9.736e-05 0.00% FabArrayBase::getCPC() 41 6.224e-05 7.105e-05 7.66e-05 0.00% Amr::writeSmallPlotFile() 1 3.054e-05 4.746e-05 6.293e-05 0.00% Castro::retry_advance_ctu() 10 7.012e-06 2.653e-05 5.259e-05 0.00% FabArrayBase::CPC::define() 2 2.339e-05 2.558e-05 3.316e-05 0.00% Castro::enforce_speed_limit() 62 2.363e-05 2.671e-05 2.966e-05 0.00% Castro::FluxRegCrseInit 10 5.759e-06 1.089e-05 1.843e-05 0.00% Gravity::set_mass_offset() 10 9.186e-06 1.168e-05 1.823e-05 0.00% Gravity::swapTimeLevels() 10 7.416e-06 9.949e-06 1.248e-05 0.00% Castro::create_source_corrector() 10 6.794e-06 8.992e-06 1.047e-05 0.00% Amr::initSubcycle() 1 9.494e-06 9.901e-06 1.035e-05 0.00% Castro::FluxRegFineAdd() 10 2.143e-06 2.317e-06 2.585e-06 0.00% DistributionMapping::Distribute() 1 8.12e-07 9.047e-07 1.04e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 36 B 38 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.12-18-g3497f016d920) finalized