Initializing AMReX (23.12-21-gef38229189e3)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.12-21-gef38229189e3) initialized Starting run at 06:29:23 UTC on 2023-12-19. Successfully read inputs file ... Castro git describe: 23.12-12-ge65b3b9c2 AMReX git describe: 23.12-21-gef3822918 Microphysics git describe: 23.12-7-g4d7d0299 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013207509 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.357076681 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.359480519 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.335342959 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.332917382 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.351505998 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.370860752 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.308430265 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.30787807 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.308587449 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.308308294 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007775727 seconds Ending run at 06:29:26 UTC on 2023-12-19. Run time = 3.544267679 Run time without initialization = 3.354062569 Average number of zones advanced per microsecond: 0.782 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.543 ... 3.544 ... 3.544 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2951 2.3586 2.4414 68.88% Gravity::make_radial_gravity() 21 0.2853 0.295 0.3054 8.62% check_for_negative_density() 10 0.006892 0.09468 0.1617 4.56% Castro::initData() 1 0.04757 0.0893 0.1279 3.61% Castro::estTimeStep() 21 0.02706 0.07257 0.1189 3.35% amrex::Copy() 193 0.07145 0.0799 0.09251 2.61% FabArray::setVal() 143 0.06498 0.07543 0.08915 2.52% FabArray::ParallelCopy_finish() 41 0.03265 0.0602 0.07929 2.24% Castro::reset_internal_energy(Fab) 1008 0.0461 0.04811 0.05025 1.42% Castro::normalize_species() 62 0.04117 0.0424 0.04383 1.24% FabArray::ParallelCopy_nowait() 41 0.03611 0.04174 0.0437 1.23% FillPatchIterator::Initialize 41 0.02768 0.03482 0.0405 1.14% StateData::FillBoundary(geom) 41 0.02842 0.03204 0.0351 0.99% Gravity::interpolate_monopole_grav() 21 0.02753 0.02906 0.02996 0.85% Castro::construct_new_gravity_source() 10 0.02238 0.02454 0.02702 0.76% Castro::initialize_do_advance() 10 0.01222 0.01882 0.02336 0.66% Castro::computeTemp() 63 0.01878 0.01973 0.02042 0.58% Castro::initialize_advance() 10 0.009707 0.01227 0.01509 0.43% FabArray::Saxpy() 20 0.01187 0.01301 0.01406 0.40% FabArray::setDomainBndry() 41 0.007361 0.01054 0.01253 0.35% VisMF::Write(FabArray) 2 0.008825 0.009365 0.01193 0.34% MultiFab::contains_nan() 20 0.009992 0.01094 0.01184 0.33% Castro::construct_old_gravity_source() 10 0.006864 0.009747 0.01054 0.30% Amr::writePlotFile() 2 0.006324 0.008876 0.009682 0.27% Amr::coarseTimeStep() 10 0.002161 0.005434 0.008642 0.24% Castro::initMFs() 1 0.006478 0.007037 0.007406 0.21% Castro::construct_new_source() 50 0.005881 0.006317 0.006596 0.19% Castro::enforce_min_density() 62 0.005766 0.006234 0.006492 0.18% Castro::swap_state_time_levels() 10 0.003274 0.00456 0.006079 0.17% StateData::define() 4 0.005234 0.005715 0.00601 0.17% main() 1 0.00391 0.004534 0.005178 0.15% Gravity::get_new_grav_vector() 11 0.00292 0.003611 0.003972 0.11% Gravity::get_old_grav_vector() 10 0.001468 0.001994 0.002299 0.06% Castro::buildMetrics() 1 0.001488 0.00163 0.001737 0.05% Castro::finalize_do_advance() 10 0.0005541 0.001097 0.001381 0.04% AmrLevel::FillPatch() 41 0.0008396 0.0009373 0.001188 0.03% Amr::InitAmr() 1 0.000258 0.0003042 0.0004575 0.01% Amr::timeStep() 10 0.0001567 0.0002125 0.0003533 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002748 0.0002924 0.0003178 0.01% DistributionMapping::LeastUsedCPUs() 1 7.683e-06 0.0001693 0.0002197 0.01% Castro::clean_state() 62 0.0001445 0.0001557 0.0001765 0.00% Castro::do_advance_ctu() 10 0.0001135 0.0001429 0.0001712 0.00% FillPatchIterator::FillFromLevel0() 41 9.694e-05 0.0001188 0.0001591 0.00% StateDataPhysBCFunct::() 41 9.373e-05 0.0001048 0.0001207 0.00% Castro::finalize_advance() 10 7.523e-05 9.82e-05 0.000115 0.00% Amr::writeSmallPlotFile() 1 4.275e-05 6.54e-05 0.0001047 0.00% Amr::FinalizeInit() 1 4.47e-06 1.82e-05 0.0001034 0.00% Castro::do_old_sources() 10 6.83e-05 8.744e-05 9.941e-05 0.00% Castro::enforce_consistent_e() 1 7.508e-05 8.399e-05 9.639e-05 0.00% Castro::do_new_sources() 10 5.075e-05 6.588e-05 9.307e-05 0.00% Castro::construct_old_source() 50 5.949e-05 7.276e-05 9.206e-05 0.00% FabArray::ParallelCopy() 41 7.023e-05 8.031e-05 9.177e-05 0.00% FillPatchSingleLevel 41 6.295e-05 7.016e-05 7.782e-05 0.00% FabArrayBase::getCPC() 41 3.707e-05 5.161e-05 7.105e-05 0.00% Castro::Castro() 1 5.703e-05 6.126e-05 6.612e-05 0.00% Castro::subcycle_advance_ctu() 10 4.257e-05 5.337e-05 6.394e-05 0.00% Castro::apply_source_to_state() 20 3.587e-05 4.735e-05 5.976e-05 0.00% Castro::advance() 10 3.481e-05 4.878e-05 5.944e-05 0.00% Castro::retry_advance_ctu() 10 6.685e-06 3.086e-05 5.527e-05 0.00% Castro::construct_old_gravity() 10 3.427e-05 4.044e-05 4.945e-05 0.00% Castro::construct_new_gravity() 10 3.126e-05 3.663e-05 4.475e-05 0.00% Castro::enforce_speed_limit() 62 2.3e-05 2.803e-05 4.115e-05 0.00% Amr::defBaseLevel() 1 2.534e-05 3.06e-05 3.561e-05 0.00% FabArrayBase::CPC::define() 2 2.234e-05 2.641e-05 3.396e-05 0.00% Castro::post_timestep() 10 1.324e-05 1.738e-05 3.36e-05 0.00% Castro::expand_state() 10 2.075e-05 2.674e-05 3.333e-05 0.00% Castro::check_for_nan() 20 2.183e-05 2.386e-05 2.611e-05 0.00% Gravity::set_mass_offset() 10 9.26e-06 1.447e-05 2.323e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.373e-05 1.682e-05 2.216e-05 0.00% Castro::post_init() 1 1.453e-05 1.712e-05 1.996e-05 0.00% Castro::FluxRegCrseInit 10 5.169e-06 1.002e-05 1.565e-05 0.00% Gravity::swapTimeLevels() 10 9.147e-06 1.221e-05 1.487e-05 0.00% Amr::initSubcycle() 1 9.295e-06 1.053e-05 1.12e-05 0.00% Castro::computeNewDt() 9 7.168e-06 8.472e-06 1.042e-05 0.00% Castro::create_source_corrector() 10 7.978e-06 9.045e-06 1.004e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.02e-06 4.907e-06 6.068e-06 0.00% Amr::InitializeInit() 1 1.833e-06 2.518e-06 5.529e-06 0.00% Castro::post_regrid() 1 2.204e-06 3.526e-06 4.806e-06 0.00% Castro::computeInitialDt() 2 2.935e-06 3.821e-06 4.393e-06 0.00% Castro::FluxRegFineAdd() 10 1.934e-06 2.428e-06 3.001e-06 0.00% Amr::init() 1 2.13e-06 2.5e-06 2.765e-06 0.00% Amr::initialInit() 1 1.181e-06 1.63e-06 2.065e-06 0.00% DistributionMapping::Distribute() 1 8.77e-07 9.782e-07 1.131e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.543 3.544 3.544 100.00% Amr::coarseTimeStep() 10 3.341 3.341 3.341 94.27% Amr::timeStep() 10 3.322 3.325 3.329 93.91% Castro::advance() 10 3.307 3.308 3.309 93.37% Castro::subcycle_advance_ctu() 10 3.216 3.225 3.233 91.22% Castro::do_advance_ctu() 10 3.216 3.225 3.233 91.22% Castro::construct_ctu_hydro_source() 10 2.469 2.474 2.479 69.93% Gravity::make_radial_gravity() 21 0.3017 0.3115 0.3207 9.05% AmrLevel::FillPatch() 41 0.1856 0.2105 0.2341 6.60% Gravity::get_new_grav_vector() 11 0.208 0.2091 0.2099 5.92% FillPatchIterator::Initialize 41 0.1576 0.1798 0.2019 5.70% Castro::construct_old_gravity() 10 0.1789 0.1871 0.1954 5.51% Gravity::get_old_grav_vector() 10 0.1783 0.1863 0.194 5.47% Castro::initialize_do_advance() 10 0.1616 0.1774 0.1929 5.44% Amr::init() 1 0.1896 0.1897 0.1898 5.35% Castro::construct_new_gravity() 10 0.1847 0.1859 0.1871 5.28% Amr::initialInit() 1 0.1761 0.1764 0.1765 4.98% check_for_negative_density() 10 0.006892 0.09468 0.1617 4.56% FillPatchIterator::FillFromLevel0() 41 0.1109 0.1344 0.1551 4.38% FillPatchSingleLevel 41 0.1108 0.1343 0.155 4.37% Amr::InitializeInit() 1 0.06676 0.1099 0.1495 4.22% Amr::defBaseLevel() 1 0.06676 0.1099 0.1495 4.22% Castro::expand_state() 10 0.1045 0.1215 0.1383 3.90% Castro::initData() 1 0.05141 0.09311 0.1318 3.72% FabArray::ParallelCopy() 41 0.07554 0.1021 0.1209 3.41% Castro::clean_state() 62 0.113 0.1161 0.1192 3.36% Castro::estTimeStep() 21 0.02706 0.07257 0.1189 3.35% Amr::FinalizeInit() 1 0.02697 0.06642 0.1094 3.09% Castro::do_old_sources() 10 0.09437 0.09789 0.1022 2.88% amrex::Copy() 193 0.07145 0.0799 0.09251 2.61% FabArray::setVal() 143 0.06498 0.07543 0.08915 2.52% Castro::initialize_advance() 10 0.07064 0.07853 0.08721 2.46% Castro::computeInitialDt() 2 0.002196 0.0418 0.08502 2.40% FabArray::ParallelCopy_finish() 41 0.03265 0.0602 0.07929 2.24% Castro::computeTemp() 63 0.06552 0.06814 0.07063 1.99% Castro::do_new_sources() 10 0.06016 0.06389 0.06897 1.95% Castro::reset_internal_energy(MultiFab) 63 0.04638 0.04841 0.05057 1.43% Castro::reset_internal_energy(Fab) 1008 0.0461 0.04811 0.05025 1.42% Castro::normalize_species() 62 0.04117 0.0424 0.04383 1.24% FabArray::ParallelCopy_nowait() 41 0.03621 0.04182 0.04376 1.23% StateDataPhysBCFunct::() 41 0.02853 0.03214 0.03519 0.99% StateData::FillBoundary(geom) 41 0.02842 0.03204 0.0351 0.99% Castro::construct_new_source() 50 0.02827 0.03086 0.03336 0.94% Gravity::interpolate_monopole_grav() 21 0.02753 0.02906 0.02996 0.85% Castro::finalize_do_advance() 10 0.01669 0.02264 0.02778 0.78% Castro::construct_new_gravity_source() 10 0.02238 0.02454 0.02702 0.76% Castro::post_init() 1 0.02392 0.02416 0.02433 0.69% Amr::writePlotFile() 2 0.0211 0.02125 0.02151 0.61% Castro::post_timestep() 10 0.01528 0.01723 0.01919 0.54% Castro::apply_source_to_state() 20 0.0119 0.01306 0.01411 0.40% FabArray::Saxpy() 20 0.01187 0.01301 0.01406 0.40% FabArray::setDomainBndry() 41 0.007361 0.01054 0.01253 0.35% VisMF::Write(FabArray) 2 0.008825 0.009365 0.01193 0.34% Castro::check_for_nan() 20 0.01002 0.01097 0.01186 0.33% MultiFab::contains_nan() 20 0.009992 0.01094 0.01184 0.33% Castro::Castro() 1 0.009742 0.01088 0.01161 0.33% Castro::construct_old_source() 50 0.006935 0.00982 0.01061 0.30% Castro::construct_old_gravity_source() 10 0.006864 0.009747 0.01054 0.30% Castro::computeNewDt() 9 0.009234 0.009247 0.009252 0.26% Castro::initMFs() 1 0.006478 0.007037 0.007406 0.21% Castro::enforce_min_density() 62 0.005766 0.006234 0.006492 0.18% Castro::swap_state_time_levels() 10 0.003274 0.00456 0.006079 0.17% AmrLevel::AmrLevel(dm) 1 0.005257 0.005732 0.006026 0.17% StateData::define() 4 0.005234 0.005715 0.00601 0.17% Castro::finalize_advance() 10 0.002931 0.00428 0.005733 0.16% Castro::buildMetrics() 1 0.001599 0.001767 0.001892 0.05% Castro::post_regrid() 1 0.00151 0.00158 0.001678 0.05% Amr::InitAmr() 1 0.0002673 0.0003147 0.0004685 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.279e-05 0.0001752 0.0002265 0.01% DistributionMapping::LeastUsedCPUs() 1 7.683e-06 0.0001693 0.0002197 0.01% Amr::writeSmallPlotFile() 1 4.275e-05 6.54e-05 0.0001047 0.00% FabArrayBase::getCPC() 41 5.989e-05 7.802e-05 9.928e-05 0.00% Castro::enforce_consistent_e() 1 7.508e-05 8.399e-05 9.639e-05 0.00% Castro::retry_advance_ctu() 10 6.685e-06 3.086e-05 5.527e-05 0.00% Castro::enforce_speed_limit() 62 2.3e-05 2.803e-05 4.115e-05 0.00% FabArrayBase::CPC::define() 2 2.234e-05 2.641e-05 3.396e-05 0.00% Gravity::set_mass_offset() 10 9.26e-06 1.447e-05 2.323e-05 0.00% Castro::FluxRegCrseInit 10 5.169e-06 1.002e-05 1.565e-05 0.00% Gravity::swapTimeLevels() 10 9.147e-06 1.221e-05 1.487e-05 0.00% Amr::initSubcycle() 1 9.295e-06 1.053e-05 1.12e-05 0.00% Castro::create_source_corrector() 10 7.978e-06 9.045e-06 1.004e-05 0.00% Castro::FluxRegFineAdd() 10 1.934e-06 2.428e-06 3.001e-06 0.00% DistributionMapping::Distribute() 1 8.77e-07 9.782e-07 1.131e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 32 B 39 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.12-21-gef38229189e3) finalized