Initializing AMReX (23.12-21-gef38229189e3)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.12-21-gef38229189e3) initialized Starting run at 06:29:23 UTC on 2023-12-20. Successfully read inputs file ... Castro git describe: 23.12-13-gfe78cf0df AMReX git describe: 23.12-21-gef3822918 Microphysics git describe: 23.12-10-g925e0ce0 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013298407 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.355667491 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.352602338 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.329328146 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.329209776 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.329470403 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.357762888 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.315722684 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.307470485 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.30746244 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.307365475 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007470524 seconds Ending run at 06:29:26 UTC on 2023-12-20. Run time = 3.488240253 Run time without initialization = 3.305188915 Average number of zones advanced per microsecond: 0.793 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.488 ... 3.488 ... 3.488 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2766 2.3548 2.4056 68.96% Gravity::make_radial_gravity() 21 0.2877 0.2936 0.3144 9.01% check_for_negative_density() 10 0.0188 0.07492 0.1554 4.45% Castro::initData() 1 0.04734 0.08459 0.1199 3.44% Castro::estTimeStep() 21 0.02279 0.06342 0.1052 3.02% FabArray::ParallelCopy_finish() 41 0.03598 0.05893 0.09933 2.85% amrex::Copy() 193 0.06292 0.08118 0.09709 2.78% FabArray::setVal() 143 0.06236 0.07164 0.07922 2.27% Castro::reset_internal_energy(Fab) 1008 0.04585 0.04772 0.04968 1.42% FabArray::ParallelCopy_nowait() 41 0.03409 0.04031 0.04222 1.21% Castro::normalize_species() 62 0.0406 0.04126 0.04178 1.20% FillPatchIterator::Initialize 41 0.02709 0.03193 0.03537 1.01% StateData::FillBoundary(geom) 41 0.02967 0.03217 0.03455 0.99% Gravity::interpolate_monopole_grav() 21 0.02764 0.02936 0.0306 0.88% Castro::construct_new_gravity_source() 10 0.02166 0.02419 0.02639 0.76% Castro::computeTemp() 63 0.01894 0.0197 0.02037 0.58% Castro::initialize_do_advance() 10 0.01185 0.01685 0.01799 0.52% Castro::initialize_advance() 10 0.008743 0.01223 0.01555 0.45% FabArray::Saxpy() 20 0.01036 0.01242 0.01346 0.39% MultiFab::contains_nan() 20 0.01068 0.01166 0.01289 0.37% VisMF::Write(FabArray) 2 0.0089 0.009453 0.01207 0.35% FabArray::setDomainBndry() 41 0.006769 0.009104 0.01163 0.33% Castro::construct_old_gravity_source() 10 0.006452 0.009277 0.009966 0.29% Amr::writePlotFile() 2 0.006562 0.00884 0.009421 0.27% Castro::enforce_min_density() 62 0.007166 0.007379 0.007721 0.22% Castro::initMFs() 1 0.006612 0.006668 0.006844 0.20% Castro::construct_new_source() 50 0.005455 0.006326 0.006806 0.20% StateData::define() 4 0.005327 0.005428 0.005781 0.17% main() 1 0.004352 0.00468 0.004948 0.14% Castro::swap_state_time_levels() 10 0.002474 0.004203 0.00453 0.13% Gravity::get_new_grav_vector() 11 0.002709 0.003435 0.003807 0.11% Gravity::get_old_grav_vector() 10 0.001403 0.001943 0.002382 0.07% Amr::coarseTimeStep() 10 0.001024 0.001841 0.002369 0.07% Castro::buildMetrics() 1 0.00156 0.00157 0.001585 0.05% Castro::finalize_do_advance() 10 0.0005105 0.001281 0.001561 0.04% AmrLevel::FillPatch() 41 0.0007942 0.0009127 0.001109 0.03% Amr::InitAmr() 1 0.0002705 0.0002959 0.0004108 0.01% Amr::timeStep() 10 0.0001972 0.0002284 0.0003435 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002714 0.0002991 0.0003381 0.01% Castro::do_advance_ctu() 10 0.0001338 0.0001525 0.000173 0.00% Castro::clean_state() 62 0.0001385 0.0001497 0.0001668 0.00% DistributionMapping::LeastUsedCPUs() 1 7.645e-06 0.0001158 0.000132 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001131 0.000119 0.0001296 0.00% Castro::finalize_advance() 10 8.371e-05 9.482e-05 0.0001145 0.00% StateDataPhysBCFunct::() 41 8.821e-05 9.973e-05 0.0001131 0.00% Castro::do_old_sources() 10 7.612e-05 9.122e-05 0.0001059 0.00% Castro::Castro() 1 7.036e-05 8.709e-05 0.0001058 0.00% Castro::enforce_consistent_e() 1 8.047e-05 8.746e-05 9.629e-05 0.00% FabArray::ParallelCopy() 41 6.549e-05 8.02e-05 9.503e-05 0.00% Castro::construct_old_source() 50 5.348e-05 6.867e-05 7.873e-05 0.00% Castro::do_new_sources() 10 5.96e-05 6.552e-05 7.285e-05 0.00% Amr::FinalizeInit() 1 3.739e-06 1.35e-05 7.25e-05 0.00% FillPatchSingleLevel 41 6.589e-05 6.887e-05 7.169e-05 0.00% FabArrayBase::getCPC() 41 4.288e-05 5.081e-05 6.385e-05 0.00% Castro::subcycle_advance_ctu() 10 4.364e-05 5.119e-05 6.102e-05 0.00% Amr::defBaseLevel() 1 3.768e-05 4.958e-05 5.898e-05 0.00% Castro::apply_source_to_state() 20 4.279e-05 4.863e-05 5.845e-05 0.00% Castro::advance() 10 3.642e-05 4.63e-05 5.817e-05 0.00% Amr::writeSmallPlotFile() 1 3.044e-05 4.582e-05 5.615e-05 0.00% Castro::construct_old_gravity() 10 3.143e-05 3.987e-05 5.065e-05 0.00% Castro::construct_new_gravity() 10 3.202e-05 3.577e-05 4.085e-05 0.00% Castro::enforce_speed_limit() 62 2.628e-05 3.025e-05 3.695e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.839e-05 2.432e-05 3.572e-05 0.00% Castro::post_timestep() 10 1.385e-05 2.086e-05 3.211e-05 0.00% Castro::expand_state() 10 2.191e-05 2.455e-05 2.851e-05 0.00% Castro::check_for_nan() 20 2.241e-05 2.531e-05 2.747e-05 0.00% FabArrayBase::CPC::define() 2 2.072e-05 2.404e-05 2.727e-05 0.00% Gravity::swapTimeLevels() 10 8.233e-06 1.181e-05 2.475e-05 0.00% Castro::post_init() 1 1.212e-05 1.556e-05 1.935e-05 0.00% Castro::create_source_corrector() 10 7.948e-06 1.042e-05 1.79e-05 0.00% Gravity::set_mass_offset() 10 7.869e-06 1.213e-05 1.375e-05 0.00% Castro::computeNewDt() 9 7.683e-06 9.444e-06 1.112e-05 0.00% Amr::initSubcycle() 1 9.858e-06 1.037e-05 1.108e-05 0.00% Castro::FluxRegCrseInit 10 6.286e-06 7.959e-06 8.851e-06 0.00% Castro::retry_advance_ctu() 10 6.233e-06 7.521e-06 8.686e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.908e-06 5.87e-06 6.966e-06 0.00% Amr::InitializeInit() 1 1.788e-06 2.372e-06 4.956e-06 0.00% Castro::post_regrid() 1 1.671e-06 3.44e-06 4.729e-06 0.00% Castro::computeInitialDt() 2 3.096e-06 3.861e-06 4.504e-06 0.00% Castro::FluxRegFineAdd() 10 1.969e-06 2.427e-06 3.067e-06 0.00% Amr::init() 1 1.559e-06 2.039e-06 2.253e-06 0.00% Amr::initialInit() 1 1.024e-06 1.477e-06 1.743e-06 0.00% DistributionMapping::Distribute() 1 9.43e-07 1.102e-06 1.274e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.488 3.488 3.488 100.00% Amr::coarseTimeStep() 10 3.293 3.293 3.293 94.40% Amr::timeStep() 10 3.28 3.28 3.281 94.06% Castro::advance() 10 3.264 3.264 3.265 93.59% Castro::subcycle_advance_ctu() 10 3.183 3.187 3.198 91.67% Castro::do_advance_ctu() 10 3.183 3.187 3.198 91.67% Castro::construct_ctu_hydro_source() 10 2.446 2.451 2.454 70.36% Gravity::make_radial_gravity() 21 0.3044 0.3102 0.3282 9.41% AmrLevel::FillPatch() 41 0.1793 0.2036 0.2197 6.30% Gravity::get_new_grav_vector() 11 0.2046 0.2062 0.2078 5.96% Castro::construct_old_gravity() 10 0.186 0.1911 0.206 5.91% Gravity::get_old_grav_vector() 10 0.1853 0.1905 0.2055 5.89% FillPatchIterator::Initialize 41 0.1492 0.1729 0.1974 5.66% Castro::construct_new_gravity() 10 0.181 0.1819 0.1829 5.24% Amr::init() 1 0.1825 0.1826 0.1826 5.24% Amr::initialInit() 1 0.1689 0.169 0.1692 4.85% Castro::initialize_do_advance() 10 0.1578 0.1627 0.1678 4.81% FillPatchIterator::FillFromLevel0() 41 0.1096 0.1319 0.1636 4.69% FillPatchSingleLevel 41 0.1094 0.1317 0.1634 4.69% check_for_negative_density() 10 0.0188 0.07492 0.1554 4.45% Amr::InitializeInit() 1 0.06836 0.1057 0.1411 4.04% Amr::defBaseLevel() 1 0.06835 0.1057 0.1411 4.04% FabArray::ParallelCopy() 41 0.07765 0.0994 0.1336 3.83% Castro::initData() 1 0.05144 0.08866 0.1241 3.56% Castro::clean_state() 62 0.1134 0.1156 0.1189 3.41% Castro::expand_state() 10 0.1023 0.1084 0.1133 3.25% Castro::do_old_sources() 10 0.08988 0.1001 0.1072 3.07% Castro::estTimeStep() 21 0.02279 0.06342 0.1052 3.02% Amr::FinalizeInit() 1 0.02809 0.06335 0.1005 2.88% FabArray::ParallelCopy_finish() 41 0.03598 0.05893 0.09933 2.85% amrex::Copy() 193 0.06292 0.08118 0.09709 2.78% FabArray::setVal() 143 0.06236 0.07164 0.07922 2.27% Castro::initialize_advance() 10 0.06226 0.07405 0.07814 2.24% Castro::computeInitialDt() 2 0.00234 0.0377 0.07506 2.15% Castro::computeTemp() 63 0.06513 0.06772 0.07036 2.02% Castro::do_new_sources() 10 0.05968 0.06339 0.06906 1.98% Castro::reset_internal_energy(MultiFab) 63 0.04619 0.04802 0.04999 1.43% Castro::reset_internal_energy(Fab) 1008 0.04585 0.04772 0.04968 1.42% FabArray::ParallelCopy_nowait() 41 0.03418 0.04039 0.04228 1.21% Castro::normalize_species() 62 0.0406 0.04126 0.04178 1.20% StateDataPhysBCFunct::() 41 0.02977 0.03227 0.03465 0.99% StateData::FillBoundary(geom) 41 0.02967 0.03217 0.03455 0.99% Castro::construct_new_source() 50 0.02711 0.03051 0.03316 0.95% Gravity::interpolate_monopole_grav() 21 0.02764 0.02936 0.0306 0.88% Castro::construct_new_gravity_source() 10 0.02166 0.02419 0.02639 0.76% Castro::post_init() 1 0.02515 0.02535 0.02548 0.73% Castro::finalize_do_advance() 10 0.01243 0.01762 0.02227 0.64% Amr::writePlotFile() 2 0.021 0.02111 0.02127 0.61% Castro::post_timestep() 10 0.01543 0.01581 0.01627 0.47% Castro::apply_source_to_state() 20 0.01041 0.01247 0.01351 0.39% FabArray::Saxpy() 20 0.01036 0.01242 0.01346 0.39% Castro::check_for_nan() 20 0.01071 0.01169 0.01292 0.37% MultiFab::contains_nan() 20 0.01068 0.01166 0.01289 0.37% VisMF::Write(FabArray) 2 0.0089 0.009453 0.01207 0.35% Castro::Castro() 1 0.01131 0.01141 0.01163 0.33% FabArray::setDomainBndry() 41 0.006769 0.009104 0.01163 0.33% Castro::construct_old_source() 50 0.006506 0.009345 0.01004 0.29% Castro::construct_old_gravity_source() 10 0.006452 0.009277 0.009966 0.29% Castro::computeNewDt() 9 0.009376 0.009391 0.009399 0.27% Castro::enforce_min_density() 62 0.007166 0.007379 0.007721 0.22% Castro::initMFs() 1 0.006612 0.006668 0.006844 0.20% AmrLevel::AmrLevel(dm) 1 0.005363 0.005452 0.005804 0.17% StateData::define() 4 0.005327 0.005428 0.005781 0.17% Castro::swap_state_time_levels() 10 0.002474 0.004203 0.00453 0.13% Castro::finalize_advance() 10 0.003106 0.003344 0.003572 0.10% Castro::buildMetrics() 1 0.001689 0.001701 0.001713 0.05% Castro::post_regrid() 1 0.001551 0.001603 0.001663 0.05% Amr::InitAmr() 1 0.0002812 0.0003063 0.0004209 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.25e-05 0.0001227 0.0001392 0.00% DistributionMapping::LeastUsedCPUs() 1 7.645e-06 0.0001158 0.000132 0.00% Castro::enforce_consistent_e() 1 8.047e-05 8.746e-05 9.629e-05 0.00% FabArrayBase::getCPC() 41 6.458e-05 7.485e-05 9.044e-05 0.00% Amr::writeSmallPlotFile() 1 3.044e-05 4.582e-05 5.615e-05 0.00% Castro::enforce_speed_limit() 62 2.628e-05 3.025e-05 3.695e-05 0.00% FabArrayBase::CPC::define() 2 2.072e-05 2.404e-05 2.727e-05 0.00% Gravity::swapTimeLevels() 10 8.233e-06 1.181e-05 2.475e-05 0.00% Castro::create_source_corrector() 10 7.948e-06 1.042e-05 1.79e-05 0.00% Gravity::set_mass_offset() 10 7.869e-06 1.213e-05 1.375e-05 0.00% Amr::initSubcycle() 1 9.858e-06 1.037e-05 1.108e-05 0.00% Castro::FluxRegCrseInit 10 6.286e-06 7.959e-06 8.851e-06 0.00% Castro::retry_advance_ctu() 10 6.233e-06 7.521e-06 8.686e-06 0.00% Castro::FluxRegFineAdd() 10 1.969e-06 2.427e-06 3.067e-06 0.00% DistributionMapping::Distribute() 1 9.43e-07 1.102e-06 1.274e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 31 B 36 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.12-21-gef38229189e3) finalized