Initializing AMReX (23.12-24-g75571e2dcbf2)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.12-24-g75571e2dcbf2) initialized Starting run at 06:20:09 UTC on 2023-12-22. Successfully read inputs file ... Castro git describe: 23.12-16-gdaa8721ed AMReX git describe: 23.12-24-g75571e2dc Microphysics git describe: 23.12-13-ga38a1eea reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013707574 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.363502036 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.365684587 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.375189559 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.378596721 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.412807277 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.386439917 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.383307505 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.384567534 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.381148195 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.383905489 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.012309087 seconds Ending run at 06:20:13 UTC on 2023-12-22. Run time = 4.031526664 Run time without initialization = 3.836734425 Average number of zones advanced per microsecond: 0.683 Average number of zones advanced per microsecond per rank: 0.085 TinyProfiler total time across processes [min...avg...max]: 4.029 ... 4.03 ... 4.032 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.4922 2.6802 2.8666 71.10% check_for_negative_density() 10 0.01379 0.2097 0.3943 9.78% Gravity::make_radial_gravity() 21 0.2904 0.3102 0.3365 8.35% Castro::initData() 1 0.05308 0.08733 0.1246 3.09% Castro::estTimeStep() 21 0.03468 0.07357 0.1064 2.64% FabArray::ParallelCopy_finish() 41 0.03972 0.0535 0.0984 2.44% amrex::Copy() 193 0.06192 0.08566 0.09556 2.37% FabArray::setVal() 143 0.07425 0.08467 0.09325 2.31% Castro::reset_internal_energy(Fab) 1008 0.0468 0.04972 0.05204 1.29% FabArray::ParallelCopy_nowait() 41 0.03571 0.04654 0.04974 1.23% Castro::normalize_species() 62 0.0419 0.04255 0.04315 1.07% FillPatchIterator::Initialize 41 0.02916 0.0351 0.03964 0.98% StateData::FillBoundary(geom) 41 0.0288 0.03353 0.03931 0.98% Castro::construct_new_gravity_source() 10 0.02465 0.02781 0.03175 0.79% Gravity::interpolate_monopole_grav() 21 0.02789 0.02957 0.03094 0.77% Castro::computeTemp() 63 0.01889 0.02072 0.02221 0.55% Castro::initialize_do_advance() 10 0.01044 0.01923 0.02165 0.54% FabArray::Saxpy() 20 0.01259 0.01587 0.0172 0.43% Castro::initialize_advance() 10 0.008544 0.01352 0.01536 0.38% FabArray::setDomainBndry() 41 0.006216 0.01086 0.01474 0.37% VisMF::Write(FabArray) 2 0.009572 0.01108 0.01456 0.36% MultiFab::contains_nan() 20 0.01064 0.01206 0.01358 0.34% Castro::construct_old_gravity_source() 10 0.006646 0.01184 0.01282 0.32% Amr::writePlotFile() 2 0.007685 0.01126 0.01276 0.32% Castro::initMFs() 1 0.006509 0.007613 0.01029 0.26% main() 1 0.005487 0.007451 0.008563 0.21% StateData::define() 4 0.00535 0.006163 0.00817 0.20% Castro::construct_new_source() 50 0.005998 0.007303 0.008011 0.20% Castro::enforce_min_density() 62 0.005655 0.006287 0.00659 0.16% Castro::swap_state_time_levels() 10 0.003153 0.004252 0.004933 0.12% Gravity::get_new_grav_vector() 11 0.002883 0.003847 0.004644 0.12% Amr::coarseTimeStep() 10 0.001608 0.002191 0.002759 0.07% Gravity::get_old_grav_vector() 10 0.001406 0.002023 0.00261 0.06% Castro::buildMetrics() 1 0.00151 0.001779 0.002379 0.06% Castro::finalize_do_advance() 10 0.0004606 0.001296 0.001745 0.04% AmrLevel::FillPatch() 41 0.0008873 0.001056 0.001283 0.03% Amr::InitAmr() 1 0.0002672 0.0003528 0.0006387 0.02% Amr::timeStep() 10 0.0001428 0.0002279 0.0004616 0.01% DistributionMapping::LeastUsedCPUs() 1 8.879e-06 0.0003155 0.0003992 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000291 0.0003123 0.0003702 0.01% Castro::clean_state() 62 0.0001499 0.0001763 0.0002059 0.01% Castro::do_advance_ctu() 10 0.0001349 0.0001638 0.0002011 0.00% FillPatchIterator::FillFromLevel0() 41 0.000115 0.0001366 0.0002002 0.00% Castro::finalize_advance() 10 8.181e-05 0.0001117 0.0001396 0.00% Castro::do_old_sources() 10 7.938e-05 0.0001065 0.0001342 0.00% StateDataPhysBCFunct::() 41 9.837e-05 0.000105 0.0001155 0.00% Castro::construct_old_source() 50 6.303e-05 8.104e-05 0.0001124 0.00% FabArray::ParallelCopy() 41 7.695e-05 8.642e-05 0.0001101 0.00% FillPatchSingleLevel 41 5.835e-05 7.634e-05 9.75e-05 0.00% Castro::do_new_sources() 10 5.981e-05 7.303e-05 9.603e-05 0.00% Castro::enforce_consistent_e() 1 8.131e-05 8.78e-05 9.401e-05 0.00% FabArrayBase::getCPC() 41 5.312e-05 6.689e-05 8.901e-05 0.00% Castro::Castro() 1 5.281e-05 6.75e-05 7.978e-05 0.00% Castro::subcycle_advance_ctu() 10 4.427e-05 5.572e-05 6.689e-05 0.00% Amr::FinalizeInit() 1 4.227e-06 1.311e-05 6.667e-05 0.00% Castro::apply_source_to_state() 20 4.355e-05 5.742e-05 6.41e-05 0.00% Amr::writeSmallPlotFile() 1 3.134e-05 4.59e-05 6.404e-05 0.00% Castro::advance() 10 3.514e-05 4.714e-05 5.536e-05 0.00% Castro::construct_old_gravity() 10 3.294e-05 4.08e-05 4.951e-05 0.00% Castro::construct_new_gravity() 10 3.372e-05 3.8e-05 4.717e-05 0.00% Amr::defBaseLevel() 1 2.375e-05 3.312e-05 4.186e-05 0.00% Castro::enforce_speed_limit() 62 2.64e-05 3.03e-05 3.598e-05 0.00% Castro::expand_state() 10 2.096e-05 2.9e-05 3.383e-05 0.00% FabArrayBase::CPC::define() 2 2.271e-05 2.7e-05 3.181e-05 0.00% Castro::check_for_nan() 20 2.256e-05 2.507e-05 2.829e-05 0.00% Castro::post_init() 1 1.514e-05 1.774e-05 2.683e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.297e-05 1.793e-05 2.356e-05 0.00% Castro::post_timestep() 10 1.326e-05 1.658e-05 1.893e-05 0.00% Amr::initSubcycle() 1 9.657e-06 1.189e-05 1.727e-05 0.00% Castro::create_source_corrector() 10 7.923e-06 1.073e-05 1.526e-05 0.00% Gravity::set_mass_offset() 10 8.615e-06 1.158e-05 1.506e-05 0.00% Gravity::swapTimeLevels() 10 9.008e-06 1.246e-05 1.427e-05 0.00% Castro::computeNewDt() 9 6.985e-06 8.435e-06 1.099e-05 0.00% Castro::FluxRegCrseInit 10 5.904e-06 7.917e-06 9.485e-06 0.00% Castro::retry_advance_ctu() 10 6.387e-06 7.785e-06 8.866e-06 0.00% Amr::InitializeInit() 1 1.883e-06 3.357e-06 7.274e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.026e-06 5.867e-06 7.252e-06 0.00% Amr::init() 1 2.034e-06 2.742e-06 5.929e-06 0.00% Castro::computeInitialDt() 2 2.879e-06 3.403e-06 4.002e-06 0.00% Castro::post_regrid() 1 1.706e-06 2.808e-06 3.669e-06 0.00% Castro::FluxRegFineAdd() 10 2.156e-06 2.596e-06 3.303e-06 0.00% Amr::initialInit() 1 1.484e-06 1.717e-06 2.149e-06 0.00% DistributionMapping::Distribute() 1 9.33e-07 1.138e-06 1.748e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 4.029 4.03 4.032 100.00% Amr::coarseTimeStep() 10 3.816 3.816 3.816 94.65% Amr::timeStep() 10 3.803 3.803 3.804 94.35% Castro::advance() 10 3.786 3.787 3.788 93.95% Castro::subcycle_advance_ctu() 10 3.689 3.695 3.705 91.91% Castro::do_advance_ctu() 10 3.689 3.695 3.705 91.90% Castro::construct_ctu_hydro_source() 10 2.903 2.912 2.92 72.42% check_for_negative_density() 10 0.01379 0.2097 0.3943 9.78% Gravity::make_radial_gravity() 21 0.3062 0.3272 0.3502 8.69% AmrLevel::FillPatch() 41 0.1924 0.2142 0.2267 5.62% Castro::construct_old_gravity() 10 0.1833 0.1985 0.2181 5.41% Gravity::get_old_grav_vector() 10 0.1826 0.1978 0.2175 5.39% Gravity::get_new_grav_vector() 11 0.2117 0.2141 0.2163 5.37% FillPatchIterator::Initialize 41 0.1581 0.18 0.2011 4.99% Amr::init() 1 0.194 0.1943 0.1944 4.82% Castro::initialize_do_advance() 10 0.1712 0.1812 0.1937 4.80% Castro::construct_new_gravity() 10 0.1866 0.1886 0.19 4.71% Amr::initialInit() 1 0.1801 0.1804 0.1808 4.48% FillPatchIterator::FillFromLevel0() 41 0.1218 0.1341 0.1636 4.06% FillPatchSingleLevel 41 0.1217 0.1339 0.1634 4.05% Amr::InitializeInit() 1 0.07848 0.1093 0.1511 3.75% Amr::defBaseLevel() 1 0.07848 0.1093 0.1511 3.75% FabArray::ParallelCopy() 41 0.08934 0.1002 0.1344 3.33% Castro::expand_state() 10 0.1141 0.123 0.1313 3.26% Castro::initData() 1 0.05665 0.09121 0.1282 3.18% Castro::clean_state() 62 0.1133 0.1189 0.1234 3.06% Castro::do_old_sources() 10 0.09711 0.1052 0.1092 2.71% Castro::estTimeStep() 21 0.03468 0.07357 0.1064 2.64% Amr::FinalizeInit() 1 0.02924 0.07118 0.1022 2.54% FabArray::ParallelCopy_finish() 41 0.03972 0.0535 0.0984 2.44% amrex::Copy() 193 0.06192 0.08566 0.09556 2.37% Castro::initialize_advance() 10 0.07651 0.08765 0.09373 2.32% FabArray::setVal() 143 0.07425 0.08467 0.09325 2.31% Castro::do_new_sources() 10 0.06512 0.07101 0.07719 1.91% Castro::computeInitialDt() 2 0.002325 0.04432 0.07514 1.86% Castro::computeTemp() 63 0.06598 0.07075 0.07456 1.85% Castro::reset_internal_energy(MultiFab) 63 0.04709 0.05003 0.05235 1.30% Castro::reset_internal_energy(Fab) 1008 0.0468 0.04972 0.05204 1.29% FabArray::ParallelCopy_nowait() 41 0.03584 0.04664 0.04982 1.24% Castro::normalize_species() 62 0.0419 0.04255 0.04315 1.07% StateDataPhysBCFunct::() 41 0.02891 0.03364 0.03941 0.98% StateData::FillBoundary(geom) 41 0.0288 0.03353 0.03931 0.98% Castro::construct_new_source() 50 0.03065 0.03511 0.0393 0.97% Castro::construct_new_gravity_source() 10 0.02465 0.02781 0.03175 0.79% Gravity::interpolate_monopole_grav() 21 0.02789 0.02957 0.03094 0.77% Castro::finalize_do_advance() 10 0.01357 0.02138 0.02751 0.68% Castro::post_init() 1 0.02625 0.02653 0.02685 0.67% Amr::writePlotFile() 2 0.02596 0.02621 0.02651 0.66% Castro::apply_source_to_state() 20 0.01265 0.01592 0.01726 0.43% FabArray::Saxpy() 20 0.01259 0.01587 0.0172 0.43% Castro::post_timestep() 10 0.01558 0.01593 0.01625 0.40% FabArray::setDomainBndry() 41 0.006216 0.01086 0.01474 0.37% VisMF::Write(FabArray) 2 0.009572 0.01108 0.01456 0.36% Castro::Castro() 1 0.01031 0.01151 0.01451 0.36% Castro::check_for_nan() 20 0.01067 0.01208 0.0136 0.34% MultiFab::contains_nan() 20 0.01064 0.01206 0.01358 0.34% Castro::construct_old_source() 50 0.006717 0.01192 0.01289 0.32% Castro::construct_old_gravity_source() 10 0.006646 0.01184 0.01282 0.32% Castro::initMFs() 1 0.006509 0.007613 0.01029 0.26% Castro::computeNewDt() 9 0.009178 0.009189 0.009194 0.23% AmrLevel::AmrLevel(dm) 1 0.005363 0.006181 0.008192 0.20% StateData::define() 4 0.00535 0.006163 0.00817 0.20% Castro::enforce_min_density() 62 0.005655 0.006287 0.00659 0.16% Castro::finalize_advance() 10 0.003908 0.004495 0.005271 0.13% Castro::swap_state_time_levels() 10 0.003153 0.004252 0.004933 0.12% Castro::buildMetrics() 1 0.001633 0.00193 0.002603 0.06% Castro::post_regrid() 1 0.001461 0.001609 0.00197 0.05% Amr::InitAmr() 1 0.0002772 0.0003647 0.000656 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.495e-05 0.0003225 0.0004071 0.01% DistributionMapping::LeastUsedCPUs() 1 8.879e-06 0.0003155 0.0003992 0.01% FabArrayBase::getCPC() 41 7.886e-05 9.389e-05 0.0001208 0.00% Castro::enforce_consistent_e() 1 8.131e-05 8.78e-05 9.401e-05 0.00% Amr::writeSmallPlotFile() 1 3.134e-05 4.59e-05 6.404e-05 0.00% Castro::enforce_speed_limit() 62 2.64e-05 3.03e-05 3.598e-05 0.00% FabArrayBase::CPC::define() 2 2.271e-05 2.7e-05 3.181e-05 0.00% Amr::initSubcycle() 1 9.657e-06 1.189e-05 1.727e-05 0.00% Castro::create_source_corrector() 10 7.923e-06 1.073e-05 1.526e-05 0.00% Gravity::set_mass_offset() 10 8.615e-06 1.158e-05 1.506e-05 0.00% Gravity::swapTimeLevels() 10 9.008e-06 1.246e-05 1.427e-05 0.00% Castro::FluxRegCrseInit 10 5.904e-06 7.917e-06 9.485e-06 0.00% Castro::retry_advance_ctu() 10 6.387e-06 7.785e-06 8.866e-06 0.00% Castro::FluxRegFineAdd() 10 2.156e-06 2.596e-06 3.303e-06 0.00% DistributionMapping::Distribute() 1 9.33e-07 1.138e-06 1.748e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 24 B 29 B 38 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.12-24-g75571e2dcbf2) finalized