Initializing AMReX (23.12-24-g75571e2dcbf2)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.12-24-g75571e2dcbf2) initialized Starting run at 20:01:49 UTC on 2023-12-24. Successfully read inputs file ... Castro git describe: 23.12-40-g8cc53b0b0 AMReX git describe: 23.12-24-g75571e2dc Microphysics git describe: 23.12-13-ga38a1eea reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013536606 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.365720522 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.344308967 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.325866343 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.326011115 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.328299106 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.363778698 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.31801983 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.311254915 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.311957817 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.308970591 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007508444 seconds Ending run at 20:01:53 UTC on 2023-12-24. Run time = 3.501133859 Run time without initialization = 3.317380171 Average number of zones advanced per microsecond: 0.790 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.5 ... 3.501 ... 3.501 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3282 2.3650 2.3890 68.23% Gravity::make_radial_gravity() 21 0.2952 0.3015 0.3174 9.06% Castro::initData() 1 0.04758 0.09176 0.1213 3.47% check_for_negative_density() 10 0.04445 0.06929 0.1098 3.14% Castro::estTimeStep() 21 0.03114 0.05494 0.104 2.97% FabArray::ParallelCopy_finish() 41 0.04513 0.06299 0.1 2.86% amrex::Copy() 193 0.06462 0.07967 0.09263 2.65% FabArray::setVal() 143 0.06173 0.07006 0.07702 2.20% Castro::reset_internal_energy(Fab) 1008 0.04631 0.0473 0.04884 1.40% Castro::normalize_species() 62 0.04108 0.04195 0.04297 1.23% FabArray::ParallelCopy_nowait() 41 0.03376 0.03984 0.04199 1.20% FillPatchIterator::Initialize 41 0.02657 0.03194 0.03509 1.00% StateData::FillBoundary(geom) 41 0.03071 0.03212 0.03424 0.98% Gravity::interpolate_monopole_grav() 21 0.02754 0.02951 0.0317 0.91% Castro::construct_new_gravity_source() 10 0.02238 0.02417 0.02614 0.75% Castro::computeTemp() 63 0.01844 0.01967 0.02076 0.59% Castro::initialize_do_advance() 10 0.01132 0.01689 0.01806 0.52% Castro::initialize_advance() 10 0.008755 0.01221 0.01569 0.45% FabArray::Saxpy() 20 0.01006 0.01236 0.01345 0.38% MultiFab::contains_nan() 20 0.009643 0.01097 0.01254 0.36% FabArray::setDomainBndry() 41 0.006698 0.009297 0.01215 0.35% VisMF::Write(FabArray) 2 0.008596 0.00936 0.01207 0.34% Amr::writePlotFile() 2 0.006485 0.009095 0.01039 0.30% Castro::initMFs() 1 0.006242 0.007463 0.009981 0.29% Castro::construct_old_gravity_source() 10 0.006293 0.009179 0.009903 0.28% StateData::define() 4 0.005204 0.00614 0.008015 0.23% Castro::enforce_min_density() 62 0.007113 0.00737 0.007911 0.23% Castro::construct_new_source() 50 0.005781 0.006379 0.006957 0.20% main() 1 0.003621 0.004416 0.004978 0.14% Castro::swap_state_time_levels() 10 0.00319 0.004264 0.004957 0.14% Gravity::get_new_grav_vector() 11 0.002603 0.003473 0.003803 0.11% Gravity::get_old_grav_vector() 10 0.001489 0.001984 0.002546 0.07% Castro::buildMetrics() 1 0.001471 0.001743 0.002315 0.07% Amr::coarseTimeStep() 10 0.0009051 0.001586 0.001895 0.05% Castro::finalize_do_advance() 10 0.000528 0.001099 0.001354 0.04% AmrLevel::FillPatch() 41 0.0007515 0.0008376 0.0009097 0.03% Amr::InitAmr() 1 0.0002663 0.0003545 0.0005045 0.01% Amr::timeStep() 10 0.0001485 0.0002228 0.0004279 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002806 0.0002887 0.0003099 0.01% DistributionMapping::LeastUsedCPUs() 1 1.158e-05 0.0001796 0.0002713 0.01% Castro::do_advance_ctu() 10 0.0001356 0.0001509 0.0001711 0.00% Castro::clean_state() 62 0.0001314 0.0001495 0.0001615 0.00% Castro::enforce_consistent_e() 1 8.163e-05 9.098e-05 0.0001272 0.00% StateDataPhysBCFunct::() 41 8.682e-05 0.0001052 0.0001259 0.00% Castro::finalize_advance() 10 7.444e-05 9.624e-05 0.0001179 0.00% FillPatchIterator::FillFromLevel0() 41 9.523e-05 0.0001088 0.0001175 0.00% Castro::do_old_sources() 10 8.033e-05 9.124e-05 9.869e-05 0.00% FabArrayBase::getCPC() 41 4.578e-05 5.504e-05 8.423e-05 0.00% FabArray::ParallelCopy() 41 6.783e-05 7.461e-05 8.42e-05 0.00% Castro::do_new_sources() 10 5.209e-05 6.713e-05 8.416e-05 0.00% Castro::construct_old_source() 50 4.723e-05 6.785e-05 7.615e-05 0.00% Amr::FinalizeInit() 1 4.127e-06 1.336e-05 7.289e-05 0.00% Castro::Castro() 1 5.331e-05 5.972e-05 7.257e-05 0.00% Amr::writeSmallPlotFile() 1 3.037e-05 4.722e-05 7.231e-05 0.00% FillPatchSingleLevel 41 6.132e-05 6.756e-05 7.221e-05 0.00% Castro::subcycle_advance_ctu() 10 4.118e-05 5.062e-05 6.212e-05 0.00% Castro::construct_old_gravity() 10 3.471e-05 4.078e-05 5.458e-05 0.00% Castro::advance() 10 3.69e-05 4.403e-05 5.144e-05 0.00% Castro::apply_source_to_state() 20 3.583e-05 4.302e-05 4.929e-05 0.00% Castro::construct_new_gravity() 10 3.104e-05 3.741e-05 4.352e-05 0.00% Amr::defBaseLevel() 1 2.764e-05 3.301e-05 3.798e-05 0.00% Castro::enforce_speed_limit() 62 2.46e-05 2.848e-05 3.208e-05 0.00% Castro::expand_state() 10 2.048e-05 2.512e-05 3.156e-05 0.00% FabArrayBase::CPC::define() 2 2.088e-05 2.38e-05 2.804e-05 0.00% Gravity::set_mass_offset() 10 8.425e-06 1.311e-05 2.568e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.41e-05 1.911e-05 2.558e-05 0.00% Castro::check_for_nan() 20 1.951e-05 2.254e-05 2.52e-05 0.00% Castro::post_timestep() 10 1.348e-05 1.591e-05 2.474e-05 0.00% Amr::initSubcycle() 1 9.925e-06 1.278e-05 1.876e-05 0.00% Castro::post_init() 1 1.321e-05 1.564e-05 1.779e-05 0.00% Castro::create_source_corrector() 10 6.811e-06 8.947e-06 1.126e-05 0.00% Gravity::swapTimeLevels() 10 8.058e-06 9.987e-06 1.118e-05 0.00% Castro::computeNewDt() 9 6.997e-06 7.909e-06 9.751e-06 0.00% Castro::FluxRegCrseInit 10 6.688e-06 7.822e-06 9.244e-06 0.00% Castro::retry_advance_ctu() 10 6.27e-06 7.493e-06 9.181e-06 0.00% Amr::initialInit() 1 1.323e-06 3.689e-06 8.24e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.649e-06 4.906e-06 6.342e-06 0.00% Amr::InitializeInit() 1 1.893e-06 2.603e-06 5.654e-06 0.00% Castro::computeInitialDt() 2 3.349e-06 3.939e-06 4.415e-06 0.00% Castro::post_regrid() 1 2.027e-06 2.903e-06 4.411e-06 0.00% Castro::FluxRegFineAdd() 10 2.278e-06 2.692e-06 3.448e-06 0.00% Amr::init() 1 1.724e-06 2.102e-06 2.496e-06 0.00% DistributionMapping::Distribute() 1 9.04e-07 1.138e-06 1.391e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.5 3.501 3.501 100.00% Amr::coarseTimeStep() 10 3.305 3.305 3.305 94.40% Amr::timeStep() 10 3.292 3.292 3.293 94.06% Castro::advance() 10 3.276 3.277 3.277 93.59% Castro::subcycle_advance_ctu() 10 3.195 3.199 3.209 91.65% Castro::do_advance_ctu() 10 3.195 3.199 3.209 91.64% Castro::construct_ctu_hydro_source() 10 2.452 2.455 2.459 70.23% Gravity::make_radial_gravity() 21 0.3111 0.3175 0.3309 9.45% AmrLevel::FillPatch() 41 0.1823 0.2072 0.2226 6.36% Gravity::get_new_grav_vector() 11 0.207 0.2091 0.2106 6.02% Castro::construct_old_gravity() 10 0.1886 0.1924 0.2029 5.80% Gravity::get_old_grav_vector() 10 0.188 0.1918 0.2023 5.78% FillPatchIterator::Initialize 41 0.1524 0.1766 0.1987 5.67% Castro::construct_new_gravity() 10 0.1824 0.1835 0.1841 5.26% Amr::init() 1 0.183 0.1832 0.1833 5.24% Amr::initialInit() 1 0.1693 0.1697 0.1702 4.86% Castro::initialize_do_advance() 10 0.1597 0.1627 0.1666 4.76% FillPatchIterator::FillFromLevel0() 41 0.1158 0.1354 0.1654 4.72% FillPatchSingleLevel 41 0.1156 0.1353 0.1653 4.72% Amr::InitializeInit() 1 0.06688 0.1131 0.1404 4.01% Amr::defBaseLevel() 1 0.06688 0.1131 0.1404 4.01% FabArray::ParallelCopy() 41 0.08461 0.103 0.1339 3.82% Castro::initData() 1 0.05152 0.09565 0.1251 3.57% Castro::clean_state() 62 0.1128 0.1158 0.1196 3.42% Castro::expand_state() 10 0.1028 0.1087 0.1147 3.28% Castro::do_old_sources() 10 0.09607 0.1062 0.1143 3.27% check_for_negative_density() 10 0.04445 0.06929 0.1098 3.14% Castro::estTimeStep() 21 0.03114 0.05494 0.104 2.97% Amr::FinalizeInit() 1 0.02983 0.05659 0.1029 2.94% FabArray::ParallelCopy_finish() 41 0.04513 0.06299 0.1 2.86% amrex::Copy() 193 0.06462 0.07967 0.09263 2.65% Castro::initialize_advance() 10 0.0639 0.07402 0.07803 2.23% FabArray::setVal() 143 0.06173 0.07006 0.07702 2.20% Castro::computeInitialDt() 2 0.002925 0.03005 0.07639 2.18% Castro::computeTemp() 63 0.06527 0.06726 0.06979 1.99% Castro::do_new_sources() 10 0.06063 0.06361 0.06851 1.96% Castro::reset_internal_energy(MultiFab) 63 0.04659 0.04759 0.04915 1.40% Castro::reset_internal_energy(Fab) 1008 0.04631 0.0473 0.04884 1.40% Castro::normalize_species() 62 0.04108 0.04195 0.04297 1.23% FabArray::ParallelCopy_nowait() 41 0.03383 0.03992 0.04207 1.20% StateDataPhysBCFunct::() 41 0.03082 0.03223 0.03437 0.98% StateData::FillBoundary(geom) 41 0.03071 0.03212 0.03424 0.98% Castro::construct_new_source() 50 0.02816 0.03055 0.03278 0.94% Gravity::interpolate_monopole_grav() 21 0.02754 0.02951 0.0317 0.91% Castro::post_init() 1 0.02653 0.02677 0.02732 0.78% Castro::construct_new_gravity_source() 10 0.02238 0.02417 0.02614 0.75% Amr::writePlotFile() 2 0.02073 0.02109 0.02136 0.61% Castro::finalize_do_advance() 10 0.01188 0.01698 0.02047 0.58% Castro::post_timestep() 10 0.01538 0.01565 0.01587 0.45% Castro::Castro() 1 0.009696 0.01109 0.01411 0.40% Castro::apply_source_to_state() 20 0.0101 0.0124 0.0135 0.39% FabArray::Saxpy() 20 0.01006 0.01236 0.01345 0.38% Castro::check_for_nan() 20 0.009665 0.01099 0.01256 0.36% MultiFab::contains_nan() 20 0.009643 0.01097 0.01254 0.36% FabArray::setDomainBndry() 41 0.006698 0.009297 0.01215 0.35% VisMF::Write(FabArray) 2 0.008596 0.00936 0.01207 0.34% Castro::initMFs() 1 0.006242 0.007463 0.009981 0.29% Castro::construct_old_source() 50 0.00634 0.009247 0.009977 0.28% Castro::construct_old_gravity_source() 10 0.006293 0.009179 0.009903 0.28% Castro::computeNewDt() 9 0.009021 0.009028 0.009031 0.26% AmrLevel::AmrLevel(dm) 1 0.005222 0.006159 0.00804 0.23% StateData::define() 4 0.005204 0.00614 0.008015 0.23% Castro::enforce_min_density() 62 0.007113 0.00737 0.007911 0.23% Castro::swap_state_time_levels() 10 0.00319 0.004264 0.004957 0.14% Castro::finalize_advance() 10 0.003166 0.003381 0.003639 0.10% Castro::buildMetrics() 1 0.001585 0.00189 0.002524 0.07% Castro::post_regrid() 1 0.001483 0.001674 0.002133 0.06% Amr::InitAmr() 1 0.000277 0.0003673 0.0005232 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.75e-05 0.0001856 0.0002785 0.01% DistributionMapping::LeastUsedCPUs() 1 1.158e-05 0.0001796 0.0002713 0.01% Castro::enforce_consistent_e() 1 8.163e-05 9.098e-05 0.0001272 0.00% FabArrayBase::getCPC() 41 6.796e-05 7.884e-05 0.000108 0.00% Amr::writeSmallPlotFile() 1 3.037e-05 4.722e-05 7.231e-05 0.00% Castro::enforce_speed_limit() 62 2.46e-05 2.848e-05 3.208e-05 0.00% FabArrayBase::CPC::define() 2 2.088e-05 2.38e-05 2.804e-05 0.00% Gravity::set_mass_offset() 10 8.425e-06 1.311e-05 2.568e-05 0.00% Amr::initSubcycle() 1 9.925e-06 1.278e-05 1.876e-05 0.00% Castro::create_source_corrector() 10 6.811e-06 8.947e-06 1.126e-05 0.00% Gravity::swapTimeLevels() 10 8.058e-06 9.987e-06 1.118e-05 0.00% Castro::FluxRegCrseInit 10 6.688e-06 7.822e-06 9.244e-06 0.00% Castro::retry_advance_ctu() 10 6.27e-06 7.493e-06 9.181e-06 0.00% Castro::FluxRegFineAdd() 10 2.278e-06 2.692e-06 3.448e-06 0.00% DistributionMapping::Distribute() 1 9.04e-07 1.138e-06 1.391e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 35 B 43 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.12-24-g75571e2dcbf2) finalized