Initializing AMReX (23.12-24-g75571e2dcbf2)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.12-24-g75571e2dcbf2) initialized Starting run at 16:14:27 UTC on 2023-12-26. Successfully read inputs file ... Castro git describe: 23.12-40-g8cc53b0b0 AMReX git describe: 23.12-24-g75571e2dc Microphysics git describe: 23.12-13-ga38a1eea reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013260523 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.366820211 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.35576226 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.330619187 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.335882872 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.441544365 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.34286852 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.316229204 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.312879343 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.310810478 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.311350903 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007469887 seconds Ending run at 16:14:31 UTC on 2023-12-26. Run time = 3.673463271 Run time without initialization = 3.437809852 Average number of zones advanced per microsecond: 0.763 Average number of zones advanced per microsecond per rank: 0.095 TinyProfiler total time across processes [min...avg...max]: 3.672 ... 3.673 ... 3.674 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3104 2.3787 2.4930 67.86% Gravity::make_radial_gravity() 21 0.3001 0.3056 0.3183 8.66% check_for_negative_density() 10 0.06479 0.1818 0.253 6.89% Castro::initData() 1 0.04882 0.1024 0.1654 4.50% Castro::estTimeStep() 21 0.03484 0.1003 0.1525 4.15% FabArray::ParallelCopy_finish() 41 0.03404 0.05362 0.08339 2.27% amrex::Copy() 193 0.06164 0.07502 0.08133 2.21% FabArray::setVal() 143 0.06143 0.06875 0.07878 2.14% Castro::reset_internal_energy(Fab) 1008 0.04724 0.04865 0.05074 1.38% Castro::normalize_species() 62 0.04157 0.04288 0.04444 1.21% FabArray::ParallelCopy_nowait() 41 0.03395 0.03959 0.04174 1.14% StateData::FillBoundary(geom) 41 0.02937 0.03209 0.03457 0.94% FillPatchIterator::Initialize 41 0.02763 0.03195 0.0345 0.94% Gravity::interpolate_monopole_grav() 21 0.02743 0.02947 0.03041 0.83% Castro::construct_new_gravity_source() 10 0.02185 0.02485 0.02906 0.79% Castro::computeTemp() 63 0.01976 0.02021 0.02081 0.57% Castro::initialize_do_advance() 10 0.01204 0.01658 0.0207 0.56% Castro::initialize_advance() 10 0.004134 0.009968 0.01423 0.39% FabArray::Saxpy() 20 0.0103 0.01234 0.01326 0.36% VisMF::Write(FabArray) 2 0.008686 0.009551 0.0122 0.33% MultiFab::contains_nan() 20 0.01027 0.01083 0.01152 0.31% FabArray::setDomainBndry() 41 0.007505 0.009459 0.01121 0.31% Amr::writePlotFile() 2 0.006113 0.009081 0.01029 0.28% Castro::initMFs() 1 0.006266 0.007571 0.01005 0.27% Castro::construct_old_gravity_source() 10 0.006665 0.009173 0.009697 0.26% StateData::define() 4 0.00523 0.006311 0.008226 0.22% Castro::enforce_min_density() 62 0.007005 0.007432 0.007916 0.22% Castro::construct_new_source() 50 0.005399 0.006096 0.006338 0.17% Castro::swap_state_time_levels() 10 0.003193 0.004388 0.004943 0.13% main() 1 0.00308 0.004002 0.004913 0.13% Gravity::get_new_grav_vector() 11 0.002886 0.003439 0.004444 0.12% Amr::coarseTimeStep() 10 0.001327 0.002209 0.003083 0.08% Castro::buildMetrics() 1 0.001478 0.001795 0.002407 0.07% Gravity::get_old_grav_vector() 10 0.001613 0.001918 0.002242 0.06% Castro::finalize_do_advance() 10 0.000557 0.00102 0.001266 0.03% AmrLevel::FillPatch() 41 0.0007138 0.0008084 0.0009072 0.02% Amr::InitAmr() 1 0.000262 0.0003482 0.0004913 0.01% Amr::timeStep() 10 0.0001753 0.0002224 0.0003566 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002832 0.0002976 0.0003189 0.01% DistributionMapping::LeastUsedCPUs() 1 6.086e-06 0.0001715 0.0002704 0.01% Castro::clean_state() 62 0.0001387 0.0001718 0.0002141 0.01% Castro::do_advance_ctu() 10 0.0001268 0.0001432 0.000164 0.00% Castro::enforce_consistent_e() 1 8.466e-05 0.0001023 0.0001363 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001016 0.0001182 0.000133 0.00% Castro::finalize_advance() 10 7.348e-05 9.742e-05 0.0001114 0.00% StateDataPhysBCFunct::() 41 8.798e-05 9.497e-05 0.0001018 0.00% Castro::do_old_sources() 10 7.748e-05 9.07e-05 9.92e-05 0.00% FabArray::ParallelCopy() 41 7.278e-05 7.901e-05 8.325e-05 0.00% Castro::construct_old_source() 50 5.742e-05 6.923e-05 8.324e-05 0.00% FillPatchSingleLevel 41 6.581e-05 7.214e-05 8.187e-05 0.00% Amr::writeSmallPlotFile() 1 3.185e-05 5.348e-05 7.576e-05 0.00% Castro::Castro() 1 5.067e-05 6.289e-05 7.503e-05 0.00% Castro::do_new_sources() 10 5.44e-05 6.324e-05 7.384e-05 0.00% FabArrayBase::getCPC() 41 4.892e-05 5.514e-05 7.367e-05 0.00% Amr::FinalizeInit() 1 4.32e-06 1.34e-05 6.783e-05 0.00% Castro::apply_source_to_state() 20 4.146e-05 4.684e-05 6.13e-05 0.00% Castro::subcycle_advance_ctu() 10 4.315e-05 4.923e-05 5.547e-05 0.00% Castro::construct_new_gravity() 10 3.203e-05 3.73e-05 4.814e-05 0.00% Castro::advance() 10 3.407e-05 4.117e-05 4.733e-05 0.00% Castro::construct_old_gravity() 10 3.361e-05 3.797e-05 4.387e-05 0.00% Amr::defBaseLevel() 1 2.338e-05 2.995e-05 4.293e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.391e-05 2.017e-05 3.165e-05 0.00% Castro::enforce_speed_limit() 62 2.522e-05 2.77e-05 3.163e-05 0.00% FabArrayBase::CPC::define() 2 2.209e-05 2.606e-05 2.98e-05 0.00% Castro::expand_state() 10 2.134e-05 2.472e-05 2.869e-05 0.00% Castro::check_for_nan() 20 2.162e-05 2.415e-05 2.816e-05 0.00% Castro::post_timestep() 10 1.278e-05 1.519e-05 2.264e-05 0.00% Amr::initSubcycle() 1 9.948e-06 1.29e-05 1.869e-05 0.00% Castro::post_init() 1 1.33e-05 1.516e-05 1.765e-05 0.00% Gravity::swapTimeLevels() 10 7.31e-06 1.072e-05 1.719e-05 0.00% Gravity::set_mass_offset() 10 8.804e-06 1.177e-05 1.3e-05 0.00% Castro::computeNewDt() 9 7.624e-06 8.555e-06 1.178e-05 0.00% Castro::create_source_corrector() 10 7.046e-06 8.376e-06 1.058e-05 0.00% Castro::retry_advance_ctu() 10 6.696e-06 7.291e-06 8.211e-06 0.00% Castro::FluxRegCrseInit 10 6.637e-06 7.549e-06 8.205e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.976e-06 4.689e-06 6.068e-06 0.00% Castro::post_regrid() 1 1.853e-06 3.296e-06 4.992e-06 0.00% Amr::InitializeInit() 1 1.935e-06 2.565e-06 4.801e-06 0.00% Castro::computeInitialDt() 2 3.208e-06 3.888e-06 4.727e-06 0.00% Amr::init() 1 1.553e-06 2.129e-06 3.269e-06 0.00% Castro::FluxRegFineAdd() 10 1.961e-06 2.327e-06 2.723e-06 0.00% Amr::initialInit() 1 1.589e-06 1.827e-06 2.038e-06 0.00% DistributionMapping::Distribute() 1 9.09e-07 1.082e-06 1.345e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.672 3.673 3.674 100.00% Amr::coarseTimeStep() 10 3.426 3.426 3.426 93.25% Amr::timeStep() 10 3.412 3.413 3.414 92.93% Castro::advance() 10 3.396 3.397 3.397 92.48% Castro::subcycle_advance_ctu() 10 3.313 3.321 3.328 90.61% Castro::do_advance_ctu() 10 3.313 3.321 3.328 90.61% Castro::construct_ctu_hydro_source() 10 2.579 2.583 2.588 70.45% Gravity::make_radial_gravity() 21 0.316 0.3208 0.3302 8.99% check_for_negative_density() 10 0.06479 0.1818 0.253 6.89% Amr::init() 1 0.235 0.2351 0.2352 6.40% Amr::initialInit() 1 0.2207 0.2215 0.2218 6.04% Gravity::get_new_grav_vector() 11 0.2078 0.2123 0.2147 5.84% AmrLevel::FillPatch() 41 0.1792 0.197 0.2105 5.73% Castro::construct_old_gravity() 10 0.1858 0.1903 0.1969 5.36% Gravity::get_old_grav_vector() 10 0.1852 0.1897 0.1963 5.34% Amr::InitializeInit() 1 0.06779 0.1242 0.1922 5.23% Amr::defBaseLevel() 1 0.06779 0.1242 0.1922 5.23% Castro::construct_new_gravity() 10 0.1835 0.1872 0.1889 5.14% FillPatchIterator::Initialize 41 0.1502 0.1672 0.1852 5.04% Castro::initialize_do_advance() 10 0.1585 0.1679 0.1763 4.80% Castro::initData() 1 0.0527 0.1066 0.1697 4.62% Amr::FinalizeInit() 1 0.02849 0.09731 0.1539 4.19% Castro::estTimeStep() 21 0.03484 0.1003 0.1525 4.15% FillPatchIterator::FillFromLevel0() 41 0.1074 0.1257 0.1494 4.07% FillPatchSingleLevel 41 0.1073 0.1256 0.1493 4.06% Castro::computeInitialDt() 2 0.002528 0.07066 0.1271 3.46% Castro::expand_state() 10 0.102 0.114 0.1239 3.37% Castro::clean_state() 62 0.116 0.1186 0.1224 3.33% FabArray::ParallelCopy() 41 0.07399 0.09337 0.1175 3.20% Castro::do_old_sources() 10 0.08549 0.09064 0.09477 2.58% FabArray::ParallelCopy_finish() 41 0.03404 0.05362 0.08339 2.27% amrex::Copy() 193 0.06164 0.07502 0.08133 2.21% Castro::initialize_advance() 10 0.06401 0.07151 0.07994 2.18% FabArray::setVal() 143 0.06143 0.06875 0.07878 2.14% Castro::do_new_sources() 10 0.05917 0.06558 0.0746 2.03% Castro::computeTemp() 63 0.06741 0.06915 0.07184 1.96% Castro::reset_internal_energy(MultiFab) 63 0.04752 0.04895 0.05103 1.39% Castro::reset_internal_energy(Fab) 1008 0.04724 0.04865 0.05074 1.38% Castro::normalize_species() 62 0.04157 0.04288 0.04444 1.21% FabArray::ParallelCopy_nowait() 41 0.03403 0.03967 0.04181 1.14% Castro::construct_new_source() 50 0.02802 0.03095 0.03521 0.96% StateDataPhysBCFunct::() 41 0.02946 0.03219 0.03466 0.94% StateData::FillBoundary(geom) 41 0.02937 0.03209 0.03457 0.94% Gravity::interpolate_monopole_grav() 21 0.02743 0.02947 0.03041 0.83% Castro::construct_new_gravity_source() 10 0.02185 0.02485 0.02906 0.79% Castro::finalize_do_advance() 10 0.01287 0.02144 0.02785 0.76% Castro::post_init() 1 0.02542 0.02618 0.02647 0.72% Amr::writePlotFile() 2 0.02093 0.02114 0.02183 0.59% Castro::post_timestep() 10 0.01555 0.01599 0.01642 0.45% Castro::Castro() 1 0.0095 0.01109 0.01417 0.39% Castro::apply_source_to_state() 20 0.01034 0.01239 0.0133 0.36% FabArray::Saxpy() 20 0.0103 0.01234 0.01326 0.36% VisMF::Write(FabArray) 2 0.008686 0.009551 0.0122 0.33% Castro::check_for_nan() 20 0.0103 0.01085 0.01154 0.31% MultiFab::contains_nan() 20 0.01027 0.01083 0.01152 0.31% FabArray::setDomainBndry() 41 0.007505 0.009459 0.01121 0.31% Castro::initMFs() 1 0.006266 0.007571 0.01005 0.27% Castro::construct_old_source() 50 0.006724 0.009242 0.009766 0.27% Castro::construct_old_gravity_source() 10 0.006665 0.009173 0.009697 0.26% Castro::computeNewDt() 9 0.00919 0.009201 0.00921 0.25% AmrLevel::AmrLevel(dm) 1 0.005245 0.006332 0.008255 0.22% StateData::define() 4 0.00523 0.006311 0.008226 0.22% Castro::enforce_min_density() 62 0.007005 0.007432 0.007916 0.22% Castro::swap_state_time_levels() 10 0.003193 0.004388 0.004943 0.13% Castro::finalize_advance() 10 0.002933 0.003607 0.004457 0.12% Castro::buildMetrics() 1 0.001584 0.001943 0.002614 0.07% Castro::post_regrid() 1 0.001592 0.00175 0.001973 0.05% Amr::InitAmr() 1 0.0002722 0.0003611 0.00051 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.171e-05 0.0001773 0.0002775 0.01% DistributionMapping::LeastUsedCPUs() 1 6.086e-06 0.0001715 0.0002704 0.01% Castro::enforce_consistent_e() 1 8.466e-05 0.0001023 0.0001363 0.00% FabArrayBase::getCPC() 41 7.502e-05 8.12e-05 9.576e-05 0.00% Amr::writeSmallPlotFile() 1 3.185e-05 5.348e-05 7.576e-05 0.00% Castro::enforce_speed_limit() 62 2.522e-05 2.77e-05 3.163e-05 0.00% FabArrayBase::CPC::define() 2 2.209e-05 2.606e-05 2.98e-05 0.00% Amr::initSubcycle() 1 9.948e-06 1.29e-05 1.869e-05 0.00% Gravity::swapTimeLevels() 10 7.31e-06 1.072e-05 1.719e-05 0.00% Gravity::set_mass_offset() 10 8.804e-06 1.177e-05 1.3e-05 0.00% Castro::create_source_corrector() 10 7.046e-06 8.376e-06 1.058e-05 0.00% Castro::retry_advance_ctu() 10 6.696e-06 7.291e-06 8.211e-06 0.00% Castro::FluxRegCrseInit 10 6.637e-06 7.549e-06 8.205e-06 0.00% Castro::FluxRegFineAdd() 10 1.961e-06 2.327e-06 2.723e-06 0.00% DistributionMapping::Distribute() 1 9.09e-07 1.082e-06 1.345e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 34 B 43 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.12-24-g75571e2dcbf2) finalized