Initializing AMReX (23.12-24-g75571e2dcbf2)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.12-24-g75571e2dcbf2) initialized Starting run at 06:21:05 UTC on 2023-12-26. Successfully read inputs file ... Castro git describe: 23.12-17-g30952554d AMReX git describe: 23.12-24-g75571e2dc Microphysics git describe: 23.12-13-ga38a1eea reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015475476 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.35327736 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.348666428 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.324586569 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.327262302 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.346150345 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.339811943 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.308684127 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.3125007 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.311773404 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.312319973 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007522439 seconds Ending run at 06:21:09 UTC on 2023-12-26. Run time = 3.547583952 Run time without initialization = 3.298005864 Average number of zones advanced per microsecond: 0.795 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.547 ... 3.547 ... 3.548 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2620 2.3546 2.3918 67.42% Gravity::make_radial_gravity() 21 0.2958 0.3033 0.3193 9.00% Castro::estTimeStep() 21 0.04475 0.1131 0.1717 4.84% Castro::initData() 1 0.0471 0.09522 0.1655 4.66% check_for_negative_density() 10 0.02464 0.06139 0.156 4.40% FabArray::ParallelCopy_finish() 41 0.04027 0.0629 0.09879 2.78% amrex::Copy() 193 0.06253 0.07604 0.08502 2.40% FabArray::setVal() 143 0.06291 0.0709 0.08406 2.37% Castro::reset_internal_energy(Fab) 1008 0.04587 0.04786 0.04999 1.41% Castro::normalize_species() 62 0.04199 0.04292 0.04441 1.25% FabArray::ParallelCopy_nowait() 41 0.03486 0.04028 0.04171 1.18% FillPatchIterator::Initialize 41 0.02665 0.03193 0.03588 1.01% StateData::FillBoundary(geom) 41 0.02799 0.03122 0.03294 0.93% Gravity::interpolate_monopole_grav() 21 0.02902 0.03013 0.03175 0.89% Castro::construct_new_gravity_source() 10 0.02272 0.02575 0.03013 0.85% Castro::computeTemp() 63 0.01881 0.01989 0.02075 0.58% Castro::initialize_do_advance() 10 0.01135 0.01745 0.0207 0.58% VisMF::Write(FabArray) 2 0.008679 0.009856 0.01432 0.40% FabArray::Saxpy() 20 0.01085 0.01305 0.01384 0.39% Castro::initialize_advance() 10 0.004189 0.01022 0.01372 0.39% Amr::writePlotFile() 2 0.006994 0.01111 0.01302 0.37% MultiFab::contains_nan() 20 0.009589 0.01059 0.01167 0.33% FabArray::setDomainBndry() 41 0.007476 0.009185 0.01121 0.32% Castro::initMFs() 1 0.006237 0.007381 0.01055 0.30% Castro::construct_old_gravity_source() 10 0.007033 0.009577 0.01013 0.29% StateData::define() 4 0.005125 0.005848 0.007952 0.22% Castro::construct_new_source() 50 0.005563 0.006218 0.006584 0.19% Castro::enforce_min_density() 62 0.005784 0.006015 0.006283 0.18% Castro::swap_state_time_levels() 10 0.002001 0.004465 0.006104 0.17% main() 1 0.003907 0.004293 0.004714 0.13% Gravity::get_new_grav_vector() 11 0.002882 0.003568 0.004301 0.12% Amr::coarseTimeStep() 10 0.001346 0.002542 0.003709 0.10% Gravity::get_old_grav_vector() 10 0.001502 0.001962 0.002376 0.07% Castro::buildMetrics() 1 0.001445 0.00166 0.002269 0.06% Castro::finalize_do_advance() 10 0.0005161 0.001185 0.001525 0.04% AmrLevel::FillPatch() 41 0.0007599 0.0008786 0.0009688 0.03% Amr::InitAmr() 1 0.0002547 0.0003318 0.0004883 0.01% Amr::timeStep() 10 0.0001404 0.000212 0.0003592 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002786 0.0002964 0.0003195 0.01% DistributionMapping::LeastUsedCPUs() 1 6.243e-06 0.0001757 0.0002539 0.01% StateDataPhysBCFunct::() 41 8.763e-05 0.0001098 0.0001668 0.00% Castro::clean_state() 62 0.0001365 0.0001508 0.0001662 0.00% Castro::do_advance_ctu() 10 0.0001216 0.0001381 0.0001485 0.00% Castro::enforce_consistent_e() 1 7.574e-05 0.0001022 0.0001352 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001089 0.0001153 0.0001248 0.00% Castro::finalize_advance() 10 7.323e-05 9.167e-05 0.0001041 0.00% Castro::do_old_sources() 10 7.559e-05 9.074e-05 9.916e-05 0.00% FabArray::ParallelCopy() 41 7.581e-05 8.121e-05 9.354e-05 0.00% Castro::Castro() 1 5.932e-05 6.967e-05 7.902e-05 0.00% Castro::construct_old_source() 50 5.216e-05 6.99e-05 7.872e-05 0.00% Amr::FinalizeInit() 1 4.252e-06 1.405e-05 7.475e-05 0.00% FillPatchSingleLevel 41 6.504e-05 6.891e-05 7.215e-05 0.00% Castro::do_new_sources() 10 5.938e-05 6.55e-05 7.099e-05 0.00% Amr::writeSmallPlotFile() 1 2.994e-05 4.802e-05 6.796e-05 0.00% FabArrayBase::getCPC() 41 4.492e-05 5.405e-05 6.618e-05 0.00% Castro::subcycle_advance_ctu() 10 3.711e-05 4.676e-05 5.449e-05 0.00% Castro::construct_old_gravity() 10 3.311e-05 3.785e-05 4.825e-05 0.00% Castro::apply_source_to_state() 20 3.379e-05 4.318e-05 4.699e-05 0.00% Castro::advance() 10 3.414e-05 4.06e-05 4.611e-05 0.00% Amr::defBaseLevel() 1 2.848e-05 3.629e-05 4.454e-05 0.00% Castro::construct_new_gravity() 10 3.255e-05 3.606e-05 4.248e-05 0.00% FabArrayBase::CPC::define() 2 2.03e-05 2.737e-05 3.751e-05 0.00% Castro::enforce_speed_limit() 62 2.409e-05 2.726e-05 3.085e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.245e-05 1.978e-05 2.981e-05 0.00% Castro::expand_state() 10 2.017e-05 2.576e-05 2.912e-05 0.00% Castro::check_for_nan() 20 2.155e-05 2.385e-05 2.56e-05 0.00% Gravity::set_mass_offset() 10 7.857e-06 1.353e-05 2.107e-05 0.00% Castro::post_init() 1 1.365e-05 1.647e-05 1.966e-05 0.00% Castro::post_timestep() 10 1.274e-05 1.466e-05 1.804e-05 0.00% Amr::initSubcycle() 1 9.58e-06 1.171e-05 1.728e-05 0.00% Gravity::swapTimeLevels() 10 8.88e-06 1.034e-05 1.253e-05 0.00% Castro::create_source_corrector() 10 6.436e-06 8.699e-06 1.104e-05 0.00% Castro::computeNewDt() 9 6.886e-06 8.268e-06 9.866e-06 0.00% Castro::retry_advance_ctu() 10 5.921e-06 7.567e-06 9.843e-06 0.00% Castro::FluxRegCrseInit 10 6.43e-06 7.604e-06 9.248e-06 0.00% Castro::post_regrid() 1 2.428e-06 3.971e-06 7.367e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.056e-06 5.585e-06 7.133e-06 0.00% Castro::computeInitialDt() 2 4.128e-06 4.648e-06 5.185e-06 0.00% Amr::InitializeInit() 1 1.832e-06 2.411e-06 5e-06 0.00% Amr::init() 1 2.027e-06 2.587e-06 3.701e-06 0.00% Castro::FluxRegFineAdd() 10 2.124e-06 2.479e-06 2.847e-06 0.00% Amr::initialInit() 1 1.315e-06 1.808e-06 2.243e-06 0.00% DistributionMapping::Distribute() 1 9.03e-07 1.162e-06 1.407e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.547 3.547 3.548 100.00% Amr::coarseTimeStep() 10 3.286 3.286 3.286 92.62% Amr::timeStep() 10 3.271 3.272 3.274 92.27% Castro::advance() 10 3.256 3.256 3.257 91.82% Castro::subcycle_advance_ctu() 10 3.171 3.18 3.191 89.95% Castro::do_advance_ctu() 10 3.17 3.18 3.191 89.95% Castro::construct_ctu_hydro_source() 10 2.434 2.437 2.439 68.74% Gravity::make_radial_gravity() 21 0.3115 0.3191 0.3326 9.38% Amr::init() 1 0.2489 0.2491 0.2492 7.02% Amr::initialInit() 1 0.2326 0.2333 0.234 6.60% Gravity::get_new_grav_vector() 11 0.2227 0.2239 0.2246 6.33% AmrLevel::FillPatch() 41 0.1895 0.2065 0.2203 6.21% FillPatchIterator::Initialize 41 0.1584 0.176 0.1972 5.56% Castro::construct_old_gravity() 10 0.1791 0.1845 0.196 5.52% Gravity::get_old_grav_vector() 10 0.178 0.1838 0.1954 5.51% Amr::InitializeInit() 1 0.0665 0.1169 0.193 5.44% Amr::defBaseLevel() 1 0.0665 0.1169 0.193 5.44% Castro::construct_new_gravity() 10 0.187 0.1882 0.1898 5.35% Castro::initialize_do_advance() 10 0.1606 0.1715 0.1801 5.08% Castro::estTimeStep() 21 0.04475 0.1131 0.1717 4.84% Castro::initData() 1 0.05086 0.09939 0.1704 4.80% Amr::FinalizeInit() 1 0.04073 0.1164 0.1668 4.70% FillPatchIterator::FillFromLevel0() 41 0.1138 0.1349 0.1621 4.57% FillPatchSingleLevel 41 0.1137 0.1347 0.162 4.57% check_for_negative_density() 10 0.02464 0.06139 0.156 4.40% FabArray::ParallelCopy() 41 0.08153 0.1033 0.1338 3.77% Castro::computeInitialDt() 2 0.003421 0.07973 0.1302 3.67% Castro::expand_state() 10 0.1021 0.1171 0.1276 3.60% Castro::clean_state() 62 0.1126 0.1161 0.1205 3.40% FabArray::ParallelCopy_finish() 41 0.04027 0.0629 0.09879 2.78% Castro::do_old_sources() 10 0.08745 0.0907 0.09341 2.63% amrex::Copy() 193 0.06253 0.07604 0.08502 2.40% FabArray::setVal() 143 0.06291 0.0709 0.08406 2.37% Castro::initialize_advance() 10 0.06066 0.07269 0.0819 2.31% Castro::do_new_sources() 10 0.05955 0.06721 0.07907 2.23% Castro::computeTemp() 63 0.06517 0.06804 0.07068 1.99% Castro::reset_internal_energy(MultiFab) 63 0.04615 0.04815 0.05029 1.42% Castro::reset_internal_energy(Fab) 1008 0.04587 0.04786 0.04999 1.41% Castro::normalize_species() 62 0.04199 0.04292 0.04441 1.25% FabArray::ParallelCopy_nowait() 41 0.03496 0.04036 0.04181 1.18% Castro::post_init() 1 0.03608 0.03654 0.037 1.04% Castro::construct_new_source() 50 0.0289 0.03196 0.03663 1.03% Castro::finalize_do_advance() 10 0.01176 0.02534 0.03365 0.95% StateDataPhysBCFunct::() 41 0.02809 0.03133 0.03308 0.93% StateData::FillBoundary(geom) 41 0.02799 0.03122 0.03294 0.93% Gravity::interpolate_monopole_grav() 21 0.02902 0.03013 0.03175 0.89% Castro::construct_new_gravity_source() 10 0.02272 0.02575 0.03013 0.85% Amr::writePlotFile() 2 0.02253 0.02335 0.02413 0.68% Castro::post_timestep() 10 0.0152 0.01572 0.01618 0.46% Castro::Castro() 1 0.01018 0.0114 0.01463 0.41% VisMF::Write(FabArray) 2 0.008679 0.009856 0.01432 0.40% Castro::apply_source_to_state() 20 0.01089 0.01309 0.01387 0.39% FabArray::Saxpy() 20 0.01085 0.01305 0.01384 0.39% Castro::check_for_nan() 20 0.009615 0.01061 0.0117 0.33% MultiFab::contains_nan() 20 0.009589 0.01059 0.01167 0.33% FabArray::setDomainBndry() 41 0.007476 0.009185 0.01121 0.32% Castro::initMFs() 1 0.006237 0.007381 0.01055 0.30% Castro::construct_old_source() 50 0.007086 0.009647 0.01021 0.29% Castro::construct_old_gravity_source() 10 0.007033 0.009577 0.01013 0.29% Castro::computeNewDt() 9 0.009198 0.009206 0.009215 0.26% AmrLevel::AmrLevel(dm) 1 0.005143 0.005868 0.007982 0.22% StateData::define() 4 0.005125 0.005848 0.007952 0.22% Castro::enforce_min_density() 62 0.005784 0.006015 0.006283 0.18% Castro::swap_state_time_levels() 10 0.002001 0.004465 0.006104 0.17% Castro::finalize_advance() 10 0.002978 0.003744 0.004668 0.13% Castro::post_regrid() 1 0.001523 0.001925 0.002816 0.08% Castro::buildMetrics() 1 0.001564 0.001808 0.002488 0.07% Amr::InitAmr() 1 0.0002647 0.0003435 0.0005056 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.185e-05 0.0001824 0.0002622 0.01% DistributionMapping::LeastUsedCPUs() 1 6.243e-06 0.0001757 0.0002539 0.01% Castro::enforce_consistent_e() 1 7.574e-05 0.0001022 0.0001352 0.00% FabArrayBase::getCPC() 41 6.522e-05 8.143e-05 9.234e-05 0.00% Amr::writeSmallPlotFile() 1 2.994e-05 4.802e-05 6.796e-05 0.00% FabArrayBase::CPC::define() 2 2.03e-05 2.737e-05 3.751e-05 0.00% Castro::enforce_speed_limit() 62 2.409e-05 2.726e-05 3.085e-05 0.00% Gravity::set_mass_offset() 10 7.857e-06 1.353e-05 2.107e-05 0.00% Amr::initSubcycle() 1 9.58e-06 1.171e-05 1.728e-05 0.00% Gravity::swapTimeLevels() 10 8.88e-06 1.034e-05 1.253e-05 0.00% Castro::create_source_corrector() 10 6.436e-06 8.699e-06 1.104e-05 0.00% Castro::retry_advance_ctu() 10 5.921e-06 7.567e-06 9.843e-06 0.00% Castro::FluxRegCrseInit 10 6.43e-06 7.604e-06 9.248e-06 0.00% Castro::FluxRegFineAdd() 10 2.124e-06 2.479e-06 2.847e-06 0.00% DistributionMapping::Distribute() 1 9.03e-07 1.162e-06 1.407e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 35 B 46 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.12-24-g75571e2dcbf2) finalized