Initializing AMReX (23.12-24-g75571e2dcbf2)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.12-24-g75571e2dcbf2) initialized Starting run at 06:20:48 UTC on 2023-12-27. Successfully read inputs file ... Castro git describe: 23.12-18-gc3509d44c AMReX git describe: 23.12-24-g75571e2dc Microphysics git describe: 23.12-13-ga38a1eea reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016023087 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.34880413 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.348432571 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.325209491 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.324505986 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.328414266 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.353469868 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.306566394 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.306341921 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.307221207 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.308766201 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.00759872 seconds Ending run at 06:20:52 UTC on 2023-12-27. Run time = 3.521757592 Run time without initialization = 3.271026378 Average number of zones advanced per microsecond: 0.801 Average number of zones advanced per microsecond per rank: 0.100 TinyProfiler total time across processes [min...avg...max]: 3.52 ... 3.521 ... 3.522 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3014 2.3372 2.3673 67.22% Gravity::make_radial_gravity() 21 0.2935 0.3001 0.3129 8.88% Castro::initData() 1 0.05393 0.1061 0.1661 4.72% Castro::estTimeStep() 21 0.0327 0.09498 0.1526 4.33% check_for_negative_density() 10 0.02336 0.05885 0.09948 2.82% FabArray::ParallelCopy_finish() 41 0.03824 0.06417 0.0978 2.78% amrex::Copy() 193 0.06481 0.07644 0.0874 2.48% FabArray::setVal() 143 0.06359 0.0723 0.08607 2.44% Castro::reset_internal_energy(Fab) 1008 0.04496 0.04777 0.04958 1.41% Castro::normalize_species() 62 0.04117 0.04243 0.04408 1.25% FabArray::ParallelCopy_nowait() 41 0.03458 0.04015 0.04218 1.20% FillPatchIterator::Initialize 41 0.02708 0.032 0.03794 1.08% StateData::FillBoundary(geom) 41 0.02847 0.03115 0.0349 0.99% Gravity::interpolate_monopole_grav() 21 0.02861 0.02946 0.0299 0.85% Castro::construct_new_gravity_source() 10 0.02174 0.02414 0.02655 0.75% Castro::initialize_do_advance() 10 0.0122 0.01772 0.0226 0.64% Castro::computeTemp() 63 0.0179 0.01976 0.02121 0.60% FabArray::Saxpy() 20 0.01059 0.01279 0.0147 0.42% Amr::writePlotFile() 2 0.008146 0.01267 0.01429 0.41% Castro::initialize_advance() 10 0.00413 0.01022 0.01327 0.38% VisMF::Write(FabArray) 2 0.00868 0.009634 0.01326 0.38% MultiFab::contains_nan() 20 0.009667 0.01068 0.01194 0.34% FabArray::setDomainBndry() 41 0.00652 0.009349 0.01181 0.34% Castro::construct_old_gravity_source() 10 0.006832 0.009531 0.01064 0.30% Castro::initMFs() 1 0.006134 0.007948 0.009593 0.27% StateData::define() 4 0.005095 0.006513 0.007724 0.22% Castro::construct_new_source() 50 0.005544 0.006445 0.007058 0.20% Castro::enforce_min_density() 62 0.005704 0.006104 0.006559 0.19% Castro::swap_state_time_levels() 10 0.003767 0.004341 0.006012 0.17% Amr::coarseTimeStep() 10 0.002228 0.003929 0.005123 0.15% main() 1 0.003056 0.004415 0.004908 0.14% Gravity::get_new_grav_vector() 11 0.003054 0.003456 0.004114 0.12% Gravity::get_old_grav_vector() 10 0.001602 0.001934 0.002261 0.06% Castro::buildMetrics() 1 0.00145 0.001879 0.002258 0.06% Castro::finalize_do_advance() 10 0.0004612 0.0009378 0.001113 0.03% AmrLevel::FillPatch() 41 0.0007127 0.0007992 0.001018 0.03% Amr::InitAmr() 1 0.0002749 0.0004486 0.0006456 0.02% Amr::timeStep() 10 0.0001513 0.0002232 0.0004631 0.01% DistributionMapping::LeastUsedCPUs() 1 8.234e-06 0.0002182 0.0004204 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002791 0.0003066 0.0003243 0.01% Castro::clean_state() 62 0.0001426 0.0001606 0.0001787 0.01% Castro::do_advance_ctu() 10 0.0001192 0.000146 0.0001665 0.00% Castro::enforce_consistent_e() 1 8.357e-05 0.0001128 0.0001466 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001012 0.0001091 0.0001249 0.00% Castro::do_old_sources() 10 6.874e-05 9.22e-05 0.000121 0.00% Castro::finalize_advance() 10 7.087e-05 9.416e-05 0.0001136 0.00% StateDataPhysBCFunct::() 41 8.926e-05 9.853e-05 0.0001082 0.00% Castro::Castro() 1 5.082e-05 6.767e-05 9.671e-05 0.00% FabArray::ParallelCopy() 41 7.528e-05 8.318e-05 9.307e-05 0.00% Castro::do_new_sources() 10 5.991e-05 6.913e-05 9.021e-05 0.00% Amr::FinalizeInit() 1 4.488e-06 1.565e-05 8.884e-05 0.00% Castro::construct_old_source() 50 4.835e-05 7.191e-05 8.456e-05 0.00% FillPatchSingleLevel 41 6.204e-05 6.79e-05 7.571e-05 0.00% FabArrayBase::getCPC() 41 4.513e-05 5.386e-05 7.227e-05 0.00% Amr::writeSmallPlotFile() 1 3.14e-05 4.951e-05 7.157e-05 0.00% Castro::subcycle_advance_ctu() 10 3.722e-05 4.884e-05 6.234e-05 0.00% Castro::advance() 10 4.068e-05 4.474e-05 5.309e-05 0.00% Castro::apply_source_to_state() 20 3.301e-05 4.381e-05 4.974e-05 0.00% Castro::construct_old_gravity() 10 3.086e-05 3.828e-05 4.575e-05 0.00% FabArrayBase::CPC::define() 2 1.863e-05 2.659e-05 4.233e-05 0.00% Castro::construct_new_gravity() 10 3.018e-05 3.527e-05 3.95e-05 0.00% Amr::initSubcycle() 1 9.931e-06 1.726e-05 3.776e-05 0.00% Amr::defBaseLevel() 1 2.203e-05 2.988e-05 3.623e-05 0.00% Castro::computeNewDt() 9 7.569e-06 1.152e-05 3.378e-05 0.00% Castro::enforce_speed_limit() 62 2.408e-05 2.797e-05 3.247e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.438e-05 2.011e-05 2.792e-05 0.00% Castro::expand_state() 10 2.069e-05 2.395e-05 2.742e-05 0.00% Castro::check_for_nan() 20 2.223e-05 2.432e-05 2.675e-05 0.00% Castro::post_timestep() 10 1.283e-05 1.759e-05 2.571e-05 0.00% Castro::post_init() 1 1.509e-05 1.82e-05 2.445e-05 0.00% Castro::retry_advance_ctu() 10 6.4e-06 1.049e-05 2.277e-05 0.00% Gravity::set_mass_offset() 10 8.6e-06 1.315e-05 1.988e-05 0.00% Gravity::swapTimeLevels() 10 6.58e-06 1.058e-05 1.448e-05 0.00% Castro::FluxRegCrseInit 10 6.669e-06 8.485e-06 1.395e-05 0.00% Castro::create_source_corrector() 10 6.924e-06 8.432e-06 9.734e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.816e-06 5.318e-06 6.702e-06 0.00% Amr::InitializeInit() 1 2.127e-06 3.03e-06 6.573e-06 0.00% Castro::post_regrid() 1 2.517e-06 3.324e-06 4.909e-06 0.00% Castro::computeInitialDt() 2 3.184e-06 3.732e-06 4.504e-06 0.00% Amr::initialInit() 1 1.394e-06 1.939e-06 3.29e-06 0.00% Castro::FluxRegFineAdd() 10 2.097e-06 2.537e-06 2.84e-06 0.00% Amr::init() 1 1.944e-06 2.293e-06 2.701e-06 0.00% DistributionMapping::Distribute() 1 1.019e-06 1.346e-06 1.884e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.52 3.521 3.522 100.00% Amr::coarseTimeStep() 10 3.259 3.259 3.259 92.53% Amr::timeStep() 10 3.24 3.241 3.243 92.07% Castro::advance() 10 3.224 3.225 3.226 91.61% Castro::subcycle_advance_ctu() 10 3.137 3.147 3.157 89.63% Castro::do_advance_ctu() 10 3.137 3.147 3.157 89.63% Castro::construct_ctu_hydro_source() 10 2.411 2.417 2.421 68.76% Gravity::make_radial_gravity() 21 0.3096 0.3158 0.3262 9.26% Amr::init() 1 0.2499 0.2501 0.2503 7.11% Amr::initialInit() 1 0.2322 0.2331 0.2337 6.63% AmrLevel::FillPatch() 41 0.1765 0.2074 0.2254 6.40% Gravity::get_new_grav_vector() 11 0.2142 0.2166 0.2184 6.20% FillPatchIterator::Initialize 41 0.147 0.1773 0.1949 5.53% Amr::InitializeInit() 1 0.0738 0.1291 0.193 5.48% Amr::defBaseLevel() 1 0.0738 0.1291 0.193 5.48% Castro::construct_old_gravity() 10 0.1799 0.1836 0.1923 5.46% Gravity::get_old_grav_vector() 10 0.1789 0.1829 0.1917 5.44% Castro::initialize_do_advance() 10 0.1598 0.1743 0.1852 5.26% Castro::construct_new_gravity() 10 0.1795 0.1811 0.1826 5.19% Castro::initData() 1 0.05729 0.1105 0.1711 4.86% FillPatchIterator::FillFromLevel0() 41 0.1115 0.1359 0.1613 4.58% FillPatchSingleLevel 41 0.1114 0.1358 0.1612 4.58% Amr::FinalizeInit() 1 0.04063 0.104 0.1587 4.51% Castro::estTimeStep() 21 0.0327 0.09498 0.1526 4.33% Castro::expand_state() 10 0.102 0.1201 0.1337 3.80% FabArray::ParallelCopy() 41 0.07924 0.1045 0.1325 3.76% Castro::computeInitialDt() 2 0.003481 0.06746 0.123 3.49% Castro::clean_state() 62 0.1096 0.1154 0.1183 3.36% check_for_negative_density() 10 0.02336 0.05885 0.09948 2.82% Castro::do_old_sources() 10 0.09108 0.09531 0.09923 2.82% FabArray::ParallelCopy_finish() 41 0.03824 0.06417 0.0978 2.78% amrex::Copy() 193 0.06481 0.07644 0.0874 2.48% FabArray::setVal() 143 0.06359 0.0723 0.08607 2.44% Castro::initialize_advance() 10 0.06455 0.07424 0.0841 2.39% Castro::computeTemp() 63 0.06325 0.06784 0.07017 1.99% Castro::do_new_sources() 10 0.05973 0.0637 0.0689 1.96% Castro::reset_internal_energy(MultiFab) 63 0.04528 0.04808 0.04989 1.42% Castro::reset_internal_energy(Fab) 1008 0.04496 0.04777 0.04958 1.41% Castro::normalize_species() 62 0.04117 0.04243 0.04408 1.25% FabArray::ParallelCopy_nowait() 41 0.03465 0.04024 0.04228 1.20% Castro::post_init() 1 0.03594 0.03643 0.03697 1.05% StateDataPhysBCFunct::() 41 0.02857 0.03125 0.035 0.99% StateData::FillBoundary(geom) 41 0.02847 0.03115 0.0349 0.99% Castro::construct_new_source() 50 0.02728 0.03058 0.03359 0.95% Gravity::interpolate_monopole_grav() 21 0.02861 0.02946 0.0299 0.85% Castro::construct_new_gravity_source() 10 0.02174 0.02414 0.02655 0.75% Amr::writePlotFile() 2 0.02391 0.02468 0.02551 0.72% Castro::finalize_do_advance() 10 0.01157 0.01651 0.02148 0.61% Castro::post_timestep() 10 0.01526 0.01591 0.01767 0.50% Castro::apply_source_to_state() 20 0.01062 0.01283 0.01475 0.42% FabArray::Saxpy() 20 0.01059 0.01279 0.0147 0.42% Castro::Castro() 1 0.009275 0.01182 0.01407 0.40% VisMF::Write(FabArray) 2 0.00868 0.009634 0.01326 0.38% Castro::computeNewDt() 9 0.01167 0.01196 0.01204 0.34% Castro::check_for_nan() 20 0.00969 0.01071 0.01196 0.34% MultiFab::contains_nan() 20 0.009667 0.01068 0.01194 0.34% FabArray::setDomainBndry() 41 0.00652 0.009349 0.01181 0.34% Castro::construct_old_source() 50 0.00688 0.009603 0.01072 0.30% Castro::construct_old_gravity_source() 10 0.006832 0.009531 0.01064 0.30% Castro::initMFs() 1 0.006134 0.007948 0.009593 0.27% AmrLevel::AmrLevel(dm) 1 0.00511 0.006533 0.007749 0.22% StateData::define() 4 0.005095 0.006513 0.007724 0.22% Castro::enforce_min_density() 62 0.005704 0.006104 0.006559 0.19% Castro::swap_state_time_levels() 10 0.003767 0.004341 0.006012 0.17% Castro::finalize_advance() 10 0.003262 0.003622 0.005016 0.14% Castro::post_regrid() 1 0.0015 0.001897 0.002814 0.08% Castro::buildMetrics() 1 0.001561 0.002042 0.002458 0.07% Amr::InitAmr() 1 0.0002859 0.0004658 0.0006622 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.335e-05 0.0002248 0.0004282 0.01% DistributionMapping::LeastUsedCPUs() 1 8.234e-06 0.0002182 0.0004204 0.01% Castro::enforce_consistent_e() 1 8.357e-05 0.0001128 0.0001466 0.00% FabArrayBase::getCPC() 41 6.475e-05 8.045e-05 0.0001015 0.00% Amr::writeSmallPlotFile() 1 3.14e-05 4.951e-05 7.157e-05 0.00% FabArrayBase::CPC::define() 2 1.863e-05 2.659e-05 4.233e-05 0.00% Amr::initSubcycle() 1 9.931e-06 1.726e-05 3.776e-05 0.00% Castro::enforce_speed_limit() 62 2.408e-05 2.797e-05 3.247e-05 0.00% Castro::retry_advance_ctu() 10 6.4e-06 1.049e-05 2.277e-05 0.00% Gravity::set_mass_offset() 10 8.6e-06 1.315e-05 1.988e-05 0.00% Gravity::swapTimeLevels() 10 6.58e-06 1.058e-05 1.448e-05 0.00% Castro::FluxRegCrseInit 10 6.669e-06 8.485e-06 1.395e-05 0.00% Castro::create_source_corrector() 10 6.924e-06 8.432e-06 9.734e-06 0.00% Castro::FluxRegFineAdd() 10 2.097e-06 2.537e-06 2.84e-06 0.00% DistributionMapping::Distribute() 1 1.019e-06 1.346e-06 1.884e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 27 B 36 B 44 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.12-24-g75571e2dcbf2) finalized