Initializing AMReX (23.12-24-g75571e2dcbf2)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.12-24-g75571e2dcbf2) initialized Starting run at 06:20:36 UTC on 2023-12-28. Successfully read inputs file ... Castro git describe: 23.12-18-gc3509d44c AMReX git describe: 23.12-24-g75571e2dc Microphysics git describe: 23.12-13-ga38a1eea reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013523944 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.377644276 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.36460612 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.339232698 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.34326255 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.371808278 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.339198146 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.310952371 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.312685405 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.310399071 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.310947194 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007667848 seconds Ending run at 06:20:40 UTC on 2023-12-28. Run time = 3.601985484 Run time without initialization = 3.393691138 Average number of zones advanced per microsecond: 0.772 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.601 ... 3.601 ... 3.602 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3622 2.4041 2.4490 67.99% Gravity::make_radial_gravity() 21 0.3059 0.3148 0.325 9.02% Castro::initData() 1 0.04722 0.08768 0.1428 3.96% Castro::estTimeStep() 21 0.02449 0.08786 0.1366 3.79% check_for_negative_density() 10 0.03807 0.0849 0.1295 3.59% amrex::Copy() 193 0.07835 0.08151 0.08807 2.44% FabArray::setVal() 143 0.06699 0.07395 0.0814 2.26% FabArray::ParallelCopy_finish() 41 0.03598 0.04711 0.05563 1.54% Castro::reset_internal_energy(Fab) 1008 0.04669 0.04883 0.05141 1.43% FabArray::ParallelCopy_nowait() 41 0.04069 0.04277 0.0442 1.23% Castro::normalize_species() 62 0.04112 0.04222 0.04356 1.21% FillPatchIterator::Initialize 41 0.02842 0.03402 0.03644 1.01% StateData::FillBoundary(geom) 41 0.02902 0.03282 0.03588 1.00% Gravity::interpolate_monopole_grav() 21 0.02831 0.02985 0.0307 0.85% Castro::construct_new_gravity_source() 10 0.02287 0.02578 0.02892 0.80% Castro::initialize_do_advance() 10 0.01771 0.01904 0.02187 0.61% Castro::computeTemp() 63 0.01903 0.02033 0.02159 0.60% Castro::initialize_advance() 10 0.009787 0.01213 0.01471 0.41% FabArray::Saxpy() 20 0.01292 0.01341 0.01394 0.39% FabArray::setDomainBndry() 41 0.007549 0.01058 0.01272 0.35% VisMF::Write(FabArray) 2 0.008842 0.009437 0.0122 0.34% MultiFab::contains_nan() 20 0.009988 0.01117 0.01177 0.33% Castro::construct_old_gravity_source() 10 0.009955 0.01033 0.01063 0.30% Amr::writePlotFile() 2 0.006279 0.009098 0.009803 0.27% Castro::initMFs() 1 0.006321 0.006629 0.008122 0.23% Castro::construct_new_source() 50 0.006392 0.006517 0.006648 0.18% Castro::enforce_min_density() 62 0.005728 0.006167 0.006397 0.18% StateData::define() 4 0.005155 0.005288 0.005843 0.16% Gravity::get_new_grav_vector() 11 0.003001 0.004033 0.005714 0.16% Castro::swap_state_time_levels() 10 0.0033 0.004427 0.005042 0.14% main() 1 0.003427 0.004076 0.004667 0.13% Amr::coarseTimeStep() 10 0.001225 0.002167 0.003194 0.09% Gravity::get_old_grav_vector() 10 0.001589 0.002063 0.002429 0.07% Castro::buildMetrics() 1 0.001476 0.001527 0.001739 0.05% Castro::finalize_do_advance() 10 0.00103 0.001312 0.001538 0.04% AmrLevel::FillPatch() 41 0.0008087 0.0008893 0.001033 0.03% Amr::timeStep() 10 0.0001593 0.0002108 0.000411 0.01% Amr::InitAmr() 1 0.0002658 0.0002921 0.0003983 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002741 0.0003005 0.0003248 0.01% Castro::clean_state() 62 0.0001446 0.0001617 0.0001974 0.01% Castro::do_advance_ctu() 10 0.0001209 0.0001433 0.0001567 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001008 0.0001154 0.0001339 0.00% StateDataPhysBCFunct::() 41 8.865e-05 0.0001089 0.0001331 0.00% Castro::finalize_advance() 10 7.698e-05 9.878e-05 0.0001247 0.00% DistributionMapping::LeastUsedCPUs() 1 7.133e-06 9.943e-05 0.0001212 0.00% Castro::do_old_sources() 10 7.991e-05 9.578e-05 0.0001118 0.00% Castro::enforce_consistent_e() 1 7.309e-05 9.198e-05 0.0001045 0.00% FabArray::ParallelCopy() 41 6.913e-05 7.92e-05 9.297e-05 0.00% Castro::Castro() 1 5.823e-05 7.501e-05 8.518e-05 0.00% Amr::FinalizeInit() 1 4.67e-06 1.479e-05 8.219e-05 0.00% FillPatchSingleLevel 41 6.557e-05 7.13e-05 8.047e-05 0.00% Castro::construct_old_source() 50 5.711e-05 7.191e-05 8.033e-05 0.00% Castro::do_new_sources() 10 5.394e-05 6.769e-05 7.645e-05 0.00% Amr::writeSmallPlotFile() 1 2.998e-05 5.467e-05 6.929e-05 0.00% FabArrayBase::getCPC() 41 4.352e-05 5.384e-05 6.378e-05 0.00% Castro::advance() 10 3.643e-05 4.44e-05 6.011e-05 0.00% Castro::subcycle_advance_ctu() 10 3.96e-05 4.882e-05 5.829e-05 0.00% Castro::apply_source_to_state() 20 3.834e-05 4.719e-05 5.395e-05 0.00% Castro::construct_new_gravity() 10 3.111e-05 3.572e-05 4.528e-05 0.00% Amr::defBaseLevel() 1 2.209e-05 3.482e-05 4.318e-05 0.00% Castro::construct_old_gravity() 10 3.196e-05 3.678e-05 4.268e-05 0.00% Castro::enforce_speed_limit() 62 2.714e-05 2.973e-05 3.246e-05 0.00% FabArrayBase::CPC::define() 2 2.118e-05 2.532e-05 3.058e-05 0.00% Castro::expand_state() 10 2.134e-05 2.478e-05 3.04e-05 0.00% Castro::check_for_nan() 20 2.19e-05 2.383e-05 2.539e-05 0.00% Castro::post_timestep() 10 1.213e-05 1.628e-05 2.413e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.199e-05 1.608e-05 2.131e-05 0.00% Amr::initSubcycle() 1 9.608e-06 1.124e-05 1.953e-05 0.00% Castro::post_init() 1 1.33e-05 1.549e-05 1.86e-05 0.00% Gravity::set_mass_offset() 10 7.863e-06 1.085e-05 1.505e-05 0.00% Gravity::swapTimeLevels() 10 9.405e-06 1.034e-05 1.193e-05 0.00% Castro::computeNewDt() 9 7.768e-06 8.677e-06 1.082e-05 0.00% Castro::create_source_corrector() 10 8.282e-06 9.108e-06 1.047e-05 0.00% Castro::retry_advance_ctu() 10 6.89e-06 7.795e-06 9.297e-06 0.00% Castro::FluxRegCrseInit 10 6.274e-06 7.511e-06 8.728e-06 0.00% Amr::initialInit() 1 1.364e-06 2.411e-06 8.071e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.544e-06 5.882e-06 7.395e-06 0.00% Castro::computeInitialDt() 2 3.497e-06 4.184e-06 5.068e-06 0.00% Castro::post_regrid() 1 2.574e-06 3.257e-06 4.481e-06 0.00% Amr::InitializeInit() 1 1.882e-06 2.442e-06 4.425e-06 0.00% Castro::FluxRegFineAdd() 10 2.28e-06 2.616e-06 3.912e-06 0.00% Amr::init() 1 2.194e-06 2.53e-06 2.844e-06 0.00% DistributionMapping::Distribute() 1 8.86e-07 1.017e-06 1.142e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.601 3.601 3.602 100.00% Amr::coarseTimeStep() 10 3.381 3.381 3.381 93.87% Amr::timeStep() 10 3.367 3.368 3.369 93.54% Castro::advance() 10 3.352 3.352 3.353 93.08% Castro::subcycle_advance_ctu() 10 3.267 3.274 3.279 91.02% Castro::do_advance_ctu() 10 3.267 3.274 3.278 91.02% Castro::construct_ctu_hydro_source() 10 2.507 2.51 2.515 69.83% Gravity::make_radial_gravity() 21 0.3223 0.3313 0.34 9.44% Gravity::get_new_grav_vector() 11 0.2183 0.2208 0.2231 6.19% AmrLevel::FillPatch() 41 0.1812 0.2006 0.2181 6.06% Amr::init() 1 0.2077 0.2078 0.2079 5.77% Castro::construct_old_gravity() 10 0.1896 0.1958 0.2037 5.65% Gravity::get_old_grav_vector() 10 0.1889 0.1951 0.2031 5.64% Castro::construct_new_gravity() 10 0.1938 0.1953 0.197 5.47% Amr::initialInit() 1 0.1938 0.1941 0.1944 5.40% FillPatchIterator::Initialize 41 0.152 0.1678 0.1831 5.08% Castro::initialize_do_advance() 10 0.1604 0.1707 0.1805 5.01% Amr::InitializeInit() 1 0.06725 0.1082 0.1646 4.57% Amr::defBaseLevel() 1 0.06724 0.1082 0.1646 4.57% Castro::initData() 1 0.05136 0.09185 0.1469 4.08% Castro::estTimeStep() 21 0.02449 0.08786 0.1366 3.79% FillPatchIterator::FillFromLevel0() 41 0.1124 0.1232 0.1359 3.77% FillPatchSingleLevel 41 0.1123 0.123 0.1358 3.77% check_for_negative_density() 10 0.03807 0.0849 0.1295 3.59% Amr::FinalizeInit() 1 0.02973 0.08596 0.1268 3.52% Castro::expand_state() 10 0.1021 0.1136 0.1251 3.47% Castro::clean_state() 62 0.1132 0.1171 0.1221 3.39% Castro::do_old_sources() 10 0.09146 0.09602 0.1 2.78% Castro::computeInitialDt() 2 0.002548 0.05903 0.09998 2.78% FabArray::ParallelCopy() 41 0.07828 0.09005 0.09997 2.78% amrex::Copy() 193 0.07835 0.08151 0.08807 2.44% Castro::initialize_advance() 10 0.07053 0.075 0.08196 2.28% FabArray::setVal() 143 0.06699 0.07395 0.0814 2.26% Castro::do_new_sources() 10 0.06082 0.06825 0.07583 2.11% Castro::computeTemp() 63 0.066 0.06945 0.07331 2.04% FabArray::ParallelCopy_finish() 41 0.03598 0.04711 0.05563 1.54% Castro::reset_internal_energy(MultiFab) 63 0.04697 0.04913 0.05172 1.44% Castro::reset_internal_energy(Fab) 1008 0.04669 0.04883 0.05141 1.43% FabArray::ParallelCopy_nowait() 41 0.04078 0.04285 0.04428 1.23% Castro::normalize_species() 62 0.04112 0.04222 0.04356 1.21% StateDataPhysBCFunct::() 41 0.02915 0.03293 0.03596 1.00% StateData::FillBoundary(geom) 41 0.02902 0.03282 0.03588 1.00% Castro::construct_new_source() 50 0.02926 0.0323 0.03557 0.99% Gravity::interpolate_monopole_grav() 21 0.02831 0.02985 0.0307 0.85% Castro::construct_new_gravity_source() 10 0.02287 0.02578 0.02892 0.80% Castro::finalize_do_advance() 10 0.01239 0.02062 0.02851 0.79% Castro::post_init() 1 0.02634 0.02663 0.02688 0.75% Amr::writePlotFile() 2 0.02122 0.02147 0.02178 0.60% Castro::post_timestep() 10 0.01529 0.01574 0.01634 0.45% Castro::apply_source_to_state() 20 0.01296 0.01346 0.01399 0.39% FabArray::Saxpy() 20 0.01292 0.01341 0.01394 0.39% FabArray::setDomainBndry() 41 0.007549 0.01058 0.01272 0.35% VisMF::Write(FabArray) 2 0.008842 0.009437 0.0122 0.34% Castro::check_for_nan() 20 0.01001 0.0112 0.01179 0.33% MultiFab::contains_nan() 20 0.009988 0.01117 0.01177 0.33% Castro::Castro() 1 0.01055 0.01088 0.01175 0.33% Castro::construct_old_source() 50 0.01002 0.0104 0.01071 0.30% Castro::construct_old_gravity_source() 10 0.009955 0.01033 0.01063 0.30% Castro::computeNewDt() 9 0.009528 0.009534 0.009544 0.26% Castro::initMFs() 1 0.006321 0.006629 0.008122 0.23% Castro::enforce_min_density() 62 0.005728 0.006167 0.006397 0.18% AmrLevel::AmrLevel(dm) 1 0.005176 0.005304 0.005858 0.16% StateData::define() 4 0.005155 0.005288 0.005843 0.16% Castro::swap_state_time_levels() 10 0.0033 0.004427 0.005042 0.14% Castro::finalize_advance() 10 0.003035 0.003478 0.003921 0.11% Castro::buildMetrics() 1 0.001597 0.001656 0.001892 0.05% Castro::post_regrid() 1 0.001506 0.001615 0.001887 0.05% Amr::InitAmr() 1 0.0002763 0.0003034 0.000408 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.16e-05 0.0001063 0.0001293 0.00% DistributionMapping::LeastUsedCPUs() 1 7.133e-06 9.943e-05 0.0001212 0.00% Castro::enforce_consistent_e() 1 7.309e-05 9.198e-05 0.0001045 0.00% FabArrayBase::getCPC() 41 6.642e-05 7.916e-05 9.295e-05 0.00% Amr::writeSmallPlotFile() 1 2.998e-05 5.467e-05 6.929e-05 0.00% Castro::enforce_speed_limit() 62 2.714e-05 2.973e-05 3.246e-05 0.00% FabArrayBase::CPC::define() 2 2.118e-05 2.532e-05 3.058e-05 0.00% Amr::initSubcycle() 1 9.608e-06 1.124e-05 1.953e-05 0.00% Gravity::set_mass_offset() 10 7.863e-06 1.085e-05 1.505e-05 0.00% Gravity::swapTimeLevels() 10 9.405e-06 1.034e-05 1.193e-05 0.00% Castro::create_source_corrector() 10 8.282e-06 9.108e-06 1.047e-05 0.00% Castro::retry_advance_ctu() 10 6.89e-06 7.795e-06 9.297e-06 0.00% Castro::FluxRegCrseInit 10 6.274e-06 7.511e-06 8.728e-06 0.00% Castro::FluxRegFineAdd() 10 2.28e-06 2.616e-06 3.912e-06 0.00% DistributionMapping::Distribute() 1 8.86e-07 1.017e-06 1.142e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 27 B 32 B 36 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.12-24-g75571e2dcbf2) finalized