Initializing AMReX (23.12-24-g75571e2dcbf2)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.12-24-g75571e2dcbf2) initialized Starting run at 06:24:19 UTC on 2023-12-29. Successfully read inputs file ... Castro git describe: 23.12-18-gc3509d44c AMReX git describe: 23.12-24-g75571e2dc Microphysics git describe: 23.12-15-gb8815845 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.012906139 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.366638567 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.357424833 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.328880828 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.330231953 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.358459775 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.339691903 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.310791345 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.31386767 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.313923378 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.314384243 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.00753766 seconds Ending run at 06:24:23 UTC on 2023-12-29. Run time = 3.579375276 Run time without initialization = 3.347321259 Average number of zones advanced per microsecond: 0.783 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.578 ... 3.579 ... 3.579 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3455 2.3866 2.4204 67.62% Gravity::make_radial_gravity() 21 0.2972 0.305 0.3239 9.05% Castro::initData() 1 0.05424 0.1084 0.1637 4.57% Castro::estTimeStep() 21 0.02232 0.09074 0.1404 3.92% check_for_negative_density() 10 0.04585 0.08189 0.1256 3.51% amrex::Copy() 193 0.06443 0.07681 0.0837 2.34% FabArray::setVal() 143 0.06285 0.06998 0.08144 2.28% FabArray::ParallelCopy_finish() 41 0.04038 0.05131 0.07955 2.22% Castro::reset_internal_energy(Fab) 1008 0.04613 0.04866 0.05173 1.45% Castro::normalize_species() 62 0.04108 0.04238 0.04345 1.21% FabArray::ParallelCopy_nowait() 41 0.03535 0.04047 0.04184 1.17% FillPatchIterator::Initialize 41 0.02833 0.0316 0.03394 0.95% StateData::FillBoundary(geom) 41 0.02934 0.03105 0.03239 0.90% Gravity::interpolate_monopole_grav() 21 0.0283 0.02966 0.03052 0.85% Castro::construct_new_gravity_source() 10 0.0225 0.02522 0.02897 0.81% Castro::computeTemp() 63 0.01786 0.01998 0.02121 0.59% Castro::initialize_do_advance() 10 0.01221 0.01716 0.02062 0.58% Castro::initialize_advance() 10 0.004152 0.01029 0.01374 0.38% FabArray::Saxpy() 20 0.01007 0.01267 0.0135 0.38% FabArray::setDomainBndry() 41 0.006845 0.01028 0.01286 0.36% VisMF::Write(FabArray) 2 0.00888 0.009479 0.01203 0.34% MultiFab::contains_nan() 20 0.00981 0.01064 0.01169 0.33% Castro::construct_old_gravity_source() 10 0.006875 0.009567 0.01022 0.29% Amr::writePlotFile() 2 0.005939 0.008844 0.009597 0.27% Castro::initMFs() 1 0.006199 0.008194 0.009487 0.27% StateData::define() 4 0.005093 0.006705 0.007924 0.22% Castro::enforce_min_density() 62 0.005764 0.006067 0.006501 0.18% Castro::construct_new_source() 50 0.005564 0.006189 0.006457 0.18% Gravity::get_new_grav_vector() 11 0.002621 0.003607 0.005419 0.15% main() 1 0.003314 0.004096 0.004857 0.14% Castro::swap_state_time_levels() 10 0.003156 0.004171 0.004845 0.14% Amr::coarseTimeStep() 10 0.001425 0.002208 0.002758 0.08% Gravity::get_old_grav_vector() 10 0.001432 0.00197 0.002323 0.06% Castro::buildMetrics() 1 0.001453 0.001953 0.002279 0.06% Castro::finalize_do_advance() 10 0.000517 0.00105 0.001275 0.04% AmrLevel::FillPatch() 41 0.000842 0.0008871 0.0009563 0.03% Amr::InitAmr() 1 0.0002753 0.0004162 0.0005081 0.01% Amr::timeStep() 10 0.0001462 0.0002116 0.0003713 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002831 0.0003037 0.0003271 0.01% DistributionMapping::LeastUsedCPUs() 1 8.267e-06 0.000115 0.0002816 0.01% Castro::clean_state() 62 0.0001453 0.0001843 0.0002489 0.01% Castro::do_advance_ctu() 10 0.0001301 0.0001511 0.0001635 0.00% FillPatchIterator::FillFromLevel0() 41 9.785e-05 0.000122 0.0001516 0.00% Castro::enforce_consistent_e() 1 7.616e-05 0.0001104 0.0001461 0.00% StateDataPhysBCFunct::() 41 9.187e-05 0.0001046 0.0001377 0.00% Castro::finalize_advance() 10 7.824e-05 9.65e-05 0.0001136 0.00% Castro::do_old_sources() 10 7.839e-05 9.216e-05 0.0001114 0.00% Castro::construct_old_source() 50 5.452e-05 6.995e-05 9.474e-05 0.00% FillPatchSingleLevel 41 6.306e-05 6.962e-05 8.765e-05 0.00% Castro::Castro() 1 5.782e-05 6.991e-05 8.751e-05 0.00% FabArray::ParallelCopy() 41 7.137e-05 7.823e-05 8.687e-05 0.00% Amr::FinalizeInit() 1 3.236e-06 1.498e-05 7.567e-05 0.00% FabArrayBase::getCPC() 41 4.762e-05 5.427e-05 7.261e-05 0.00% Castro::do_new_sources() 10 5.645e-05 6.194e-05 7.199e-05 0.00% Amr::writeSmallPlotFile() 1 3.301e-05 4.808e-05 7.123e-05 0.00% Castro::apply_source_to_state() 20 4.212e-05 4.745e-05 5.638e-05 0.00% Castro::subcycle_advance_ctu() 10 4.082e-05 4.666e-05 5.346e-05 0.00% Castro::advance() 10 3.964e-05 4.245e-05 4.542e-05 0.00% Castro::construct_old_gravity() 10 2.991e-05 3.693e-05 4.419e-05 0.00% Castro::construct_new_gravity() 10 3.17e-05 3.689e-05 4.278e-05 0.00% Amr::defBaseLevel() 1 2.19e-05 3.073e-05 4.087e-05 0.00% Castro::expand_state() 10 2.195e-05 2.578e-05 3.06e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.337e-05 2.303e-05 3.058e-05 0.00% Castro::enforce_speed_limit() 62 2.561e-05 2.771e-05 2.896e-05 0.00% FabArrayBase::CPC::define() 2 2.178e-05 2.44e-05 2.763e-05 0.00% Castro::check_for_nan() 20 2.12e-05 2.443e-05 2.761e-05 0.00% Castro::post_timestep() 10 1.266e-05 1.582e-05 2.53e-05 0.00% Amr::initSubcycle() 1 1.064e-05 1.484e-05 2.485e-05 0.00% Castro::post_init() 1 1.199e-05 1.467e-05 1.841e-05 0.00% Gravity::set_mass_offset() 10 8.372e-06 1.112e-05 1.379e-05 0.00% Castro::create_source_corrector() 10 7.369e-06 8.954e-06 1.243e-05 0.00% Gravity::swapTimeLevels() 10 6.267e-06 9.509e-06 1.161e-05 0.00% Castro::computeNewDt() 9 7.64e-06 8.229e-06 9.333e-06 0.00% Castro::retry_advance_ctu() 10 6.145e-06 7.127e-06 9.111e-06 0.00% Castro::FluxRegCrseInit 10 6.379e-06 7.422e-06 8.323e-06 0.00% Amr::InitializeInit() 1 2.118e-06 3.303e-06 6.729e-06 0.00% Castro::post_regrid() 1 1.787e-06 3.772e-06 6.52e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.109e-06 4.681e-06 5.138e-06 0.00% Castro::computeInitialDt() 2 3.084e-06 4.014e-06 4.805e-06 0.00% Castro::FluxRegFineAdd() 10 2.037e-06 2.714e-06 3.466e-06 0.00% Amr::init() 1 1.883e-06 2.446e-06 2.956e-06 0.00% Amr::initialInit() 1 1.479e-06 1.794e-06 2.078e-06 0.00% DistributionMapping::Distribute() 1 1.015e-06 1.257e-06 1.45e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.578 3.579 3.579 100.00% Amr::coarseTimeStep() 10 3.335 3.335 3.335 93.17% Amr::timeStep() 10 3.322 3.322 3.323 92.84% Castro::advance() 10 3.306 3.306 3.307 92.39% Castro::subcycle_advance_ctu() 10 3.22 3.231 3.239 90.49% Castro::do_advance_ctu() 10 3.22 3.231 3.239 90.49% Castro::construct_ctu_hydro_source() 10 2.488 2.49 2.492 69.61% Gravity::make_radial_gravity() 21 0.3137 0.321 0.3373 9.42% Amr::init() 1 0.2314 0.2315 0.2316 6.47% Amr::initialInit() 1 0.218 0.2182 0.2187 6.11% Gravity::get_new_grav_vector() 11 0.2125 0.2157 0.2178 6.08% AmrLevel::FillPatch() 41 0.1785 0.196 0.2047 5.72% Castro::construct_old_gravity() 10 0.1799 0.1869 0.1999 5.58% Gravity::get_old_grav_vector() 10 0.1793 0.1863 0.1993 5.57% Castro::construct_new_gravity() 10 0.1883 0.191 0.1926 5.38% Amr::InitializeInit() 1 0.07423 0.1318 0.1895 5.30% Amr::defBaseLevel() 1 0.07423 0.1318 0.1895 5.29% FillPatchIterator::Initialize 41 0.149 0.1652 0.1806 5.05% Castro::initialize_do_advance() 10 0.1586 0.1678 0.1768 4.94% Castro::initData() 1 0.05785 0.1127 0.1674 4.68% FillPatchIterator::FillFromLevel0() 41 0.1127 0.1233 0.1454 4.06% FillPatchSingleLevel 41 0.1125 0.1232 0.1453 4.06% Amr::FinalizeInit() 1 0.02855 0.08644 0.1442 4.03% Castro::estTimeStep() 21 0.02232 0.09074 0.1404 3.92% check_for_negative_density() 10 0.04585 0.08189 0.1256 3.51% Castro::expand_state() 10 0.1007 0.1137 0.1226 3.42% Castro::clean_state() 62 0.1123 0.1165 0.1218 3.40% Castro::computeInitialDt() 2 0.002277 0.06014 0.1176 3.29% FabArray::ParallelCopy() 41 0.08198 0.09194 0.1151 3.21% Castro::do_old_sources() 10 0.0897 0.09145 0.09328 2.61% amrex::Copy() 193 0.06443 0.07681 0.0837 2.34% Castro::initialize_advance() 10 0.06321 0.07187 0.08223 2.30% FabArray::setVal() 143 0.06285 0.06998 0.08144 2.28% FabArray::ParallelCopy_finish() 41 0.04038 0.05131 0.07955 2.22% Castro::do_new_sources() 10 0.0596 0.06584 0.07595 2.12% Castro::computeTemp() 63 0.06432 0.06894 0.07325 2.05% Castro::reset_internal_energy(MultiFab) 63 0.04646 0.04896 0.05204 1.45% Castro::reset_internal_energy(Fab) 1008 0.04613 0.04866 0.05173 1.45% Castro::normalize_species() 62 0.04108 0.04238 0.04345 1.21% FabArray::ParallelCopy_nowait() 41 0.03543 0.04055 0.04192 1.17% Castro::construct_new_source() 50 0.02861 0.03141 0.03541 0.99% StateDataPhysBCFunct::() 41 0.02944 0.03115 0.0325 0.91% StateData::FillBoundary(geom) 41 0.02934 0.03105 0.03239 0.90% Gravity::interpolate_monopole_grav() 21 0.0283 0.02966 0.03052 0.85% Castro::finalize_do_advance() 10 0.01178 0.0224 0.029 0.81% Castro::construct_new_gravity_source() 10 0.0225 0.02522 0.02897 0.81% Castro::post_init() 1 0.02553 0.0259 0.02621 0.73% Amr::writePlotFile() 2 0.02055 0.02091 0.02115 0.59% Castro::post_timestep() 10 0.01521 0.01568 0.0163 0.46% Castro::Castro() 1 0.008966 0.01216 0.01423 0.40% Castro::apply_source_to_state() 20 0.01012 0.01272 0.01355 0.38% FabArray::Saxpy() 20 0.01007 0.01267 0.0135 0.38% FabArray::setDomainBndry() 41 0.006845 0.01028 0.01286 0.36% VisMF::Write(FabArray) 2 0.00888 0.009479 0.01203 0.34% Castro::check_for_nan() 20 0.009836 0.01066 0.01172 0.33% MultiFab::contains_nan() 20 0.00981 0.01064 0.01169 0.33% Castro::construct_old_source() 50 0.006929 0.009637 0.0103 0.29% Castro::construct_old_gravity_source() 10 0.006875 0.009567 0.01022 0.29% Castro::initMFs() 1 0.006199 0.008194 0.009487 0.27% Castro::computeNewDt() 9 0.009259 0.009265 0.009272 0.26% AmrLevel::AmrLevel(dm) 1 0.005106 0.006728 0.007951 0.22% StateData::define() 4 0.005093 0.006705 0.007924 0.22% Castro::enforce_min_density() 62 0.005764 0.006067 0.006501 0.18% Castro::swap_state_time_levels() 10 0.003156 0.004171 0.004845 0.14% Castro::finalize_advance() 10 0.003079 0.00362 0.004445 0.12% Castro::buildMetrics() 1 0.001562 0.002123 0.0025 0.07% Castro::post_regrid() 1 0.001512 0.001646 0.001907 0.05% Amr::InitAmr() 1 0.0002859 0.000431 0.0005238 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.438e-05 0.0001209 0.0002881 0.01% DistributionMapping::LeastUsedCPUs() 1 8.267e-06 0.000115 0.0002816 0.01% Castro::enforce_consistent_e() 1 7.616e-05 0.0001104 0.0001461 0.00% FabArrayBase::getCPC() 41 6.94e-05 7.867e-05 9.518e-05 0.00% Amr::writeSmallPlotFile() 1 3.301e-05 4.808e-05 7.123e-05 0.00% Castro::enforce_speed_limit() 62 2.561e-05 2.771e-05 2.896e-05 0.00% FabArrayBase::CPC::define() 2 2.178e-05 2.44e-05 2.763e-05 0.00% Amr::initSubcycle() 1 1.064e-05 1.484e-05 2.485e-05 0.00% Gravity::set_mass_offset() 10 8.372e-06 1.112e-05 1.379e-05 0.00% Castro::create_source_corrector() 10 7.369e-06 8.954e-06 1.243e-05 0.00% Gravity::swapTimeLevels() 10 6.267e-06 9.509e-06 1.161e-05 0.00% Castro::retry_advance_ctu() 10 6.145e-06 7.127e-06 9.111e-06 0.00% Castro::FluxRegCrseInit 10 6.379e-06 7.422e-06 8.323e-06 0.00% Castro::FluxRegFineAdd() 10 2.037e-06 2.714e-06 3.466e-06 0.00% DistributionMapping::Distribute() 1 1.015e-06 1.257e-06 1.45e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 34 B 38 B 46 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.12-24-g75571e2dcbf2) finalized