Initializing AMReX (23.12-24-g75571e2dcbf2)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.12-24-g75571e2dcbf2) initialized Starting run at 06:24:53 UTC on 2024-01-01. Successfully read inputs file ... Castro git describe: 23.12-19-ge8756a5ac AMReX git describe: 23.12-24-g75571e2dc Microphysics git describe: 23.12-18-g32fa7598 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.012840188 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.358595127 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.349932776 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.352356378 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.346063185 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.360198674 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.372616584 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.361784942 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.363870619 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.364264388 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.361983799 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.0437087 seconds Ending run at 06:24:57 UTC on 2024-01-01. Run time = 3.824819974 Run time without initialization = 3.641797521 Average number of zones advanced per microsecond: 0.720 Average number of zones advanced per microsecond per rank: 0.090 TinyProfiler total time across processes [min...avg...max]: 3.824 ... 3.825 ... 3.825 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.4145 2.5362 2.6816 70.11% Gravity::make_radial_gravity() 21 0.2903 0.3015 0.3229 8.44% check_for_negative_density() 10 0.01083 0.1605 0.281 7.35% Castro::initData() 1 0.04768 0.08505 0.1203 3.15% Castro::estTimeStep() 21 0.02509 0.06974 0.1133 2.96% FabArray::setVal() 143 0.07456 0.08322 0.09183 2.40% FabArray::ParallelCopy_finish() 41 0.04013 0.05373 0.09117 2.38% amrex::Copy() 193 0.06189 0.07961 0.08928 2.33% Castro::reset_internal_energy(Fab) 1008 0.04683 0.04805 0.04894 1.28% Amr::writePlotFile() 2 0.04084 0.04341 0.04553 1.19% FabArray::ParallelCopy_nowait() 41 0.03681 0.04287 0.04493 1.17% Castro::normalize_species() 62 0.04123 0.04221 0.04373 1.14% FillPatchIterator::Initialize 41 0.02583 0.03337 0.03737 0.98% StateData::FillBoundary(geom) 41 0.02877 0.03189 0.03506 0.92% Gravity::interpolate_monopole_grav() 21 0.02777 0.02987 0.03168 0.83% Castro::construct_new_gravity_source() 10 0.02436 0.0269 0.03089 0.81% Castro::computeTemp() 63 0.0194 0.0199 0.02017 0.53% Castro::initialize_do_advance() 10 0.009613 0.01739 0.01928 0.50% FabArray::Saxpy() 20 0.0136 0.01487 0.01623 0.42% Castro::initialize_advance() 10 0.008276 0.01304 0.01538 0.40% FabArray::setDomainBndry() 41 0.006551 0.01117 0.01444 0.38% VisMF::Write(FabArray) 2 0.009179 0.01009 0.01252 0.33% MultiFab::contains_nan() 20 0.01015 0.01103 0.01197 0.31% Castro::construct_old_gravity_source() 10 0.007835 0.01055 0.01158 0.30% Castro::construct_new_source() 50 0.00638 0.006855 0.007356 0.19% Castro::enforce_min_density() 62 0.005791 0.006152 0.006462 0.17% Castro::initMFs() 1 0.006294 0.00634 0.006411 0.17% main() 1 0.004945 0.0054 0.005654 0.15% StateData::define() 4 0.005288 0.005307 0.005334 0.14% Castro::swap_state_time_levels() 10 0.003127 0.004093 0.004377 0.11% Gravity::get_new_grav_vector() 11 0.00266 0.003525 0.004184 0.11% Amr::coarseTimeStep() 10 0.002089 0.002458 0.002776 0.07% Gravity::get_old_grav_vector() 10 0.001404 0.001871 0.002295 0.06% Castro::buildMetrics() 1 0.001499 0.001513 0.001536 0.04% Castro::finalize_do_advance() 10 0.0004327 0.001119 0.001394 0.04% AmrLevel::FillPatch() 41 0.0007608 0.0008789 0.001036 0.03% Amr::InitAmr() 1 0.0002682 0.0003187 0.0004802 0.01% Amr::timeStep() 10 0.0001552 0.0002517 0.00047 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002801 0.0002919 0.0003235 0.01% DistributionMapping::LeastUsedCPUs() 1 6.503e-06 0.0001983 0.0002535 0.01% Castro::do_advance_ctu() 10 0.0001271 0.0001608 0.000186 0.00% FillPatchIterator::FillFromLevel0() 41 0.000103 0.0001289 0.0001801 0.00% Castro::clean_state() 62 0.0001435 0.0001569 0.0001695 0.00% StateDataPhysBCFunct::() 41 8.812e-05 0.000122 0.0001681 0.00% Castro::do_old_sources() 10 7.789e-05 9.79e-05 0.0001159 0.00% FabArray::ParallelCopy() 41 6.964e-05 8.504e-05 0.0001135 0.00% Castro::enforce_consistent_e() 1 7.969e-05 9.262e-05 0.0001109 0.00% Castro::finalize_advance() 10 7.446e-05 9.243e-05 0.0001094 0.00% Castro::Castro() 1 5.961e-05 7.552e-05 9.9e-05 0.00% Castro::do_new_sources() 10 5.579e-05 7.149e-05 9.038e-05 0.00% Castro::construct_old_source() 50 5.529e-05 7.187e-05 8.498e-05 0.00% FillPatchSingleLevel 41 6.702e-05 7.343e-05 8.199e-05 0.00% Amr::FinalizeInit() 1 4.419e-06 1.419e-05 7.868e-05 0.00% FabArrayBase::getCPC() 41 4.821e-05 5.924e-05 7.589e-05 0.00% Amr::writeSmallPlotFile() 1 3.239e-05 4.462e-05 6.558e-05 0.00% Castro::apply_source_to_state() 20 4.19e-05 4.791e-05 6.176e-05 0.00% Castro::subcycle_advance_ctu() 10 3.82e-05 4.777e-05 5.583e-05 0.00% Castro::advance() 10 3.507e-05 4.408e-05 5.078e-05 0.00% Castro::construct_old_gravity() 10 3.305e-05 3.765e-05 4.654e-05 0.00% Castro::construct_new_gravity() 10 3.305e-05 3.678e-05 4.371e-05 0.00% Amr::defBaseLevel() 1 2.254e-05 3.083e-05 3.758e-05 0.00% Castro::enforce_speed_limit() 62 2.548e-05 2.861e-05 3.207e-05 0.00% FabArrayBase::CPC::define() 2 2.117e-05 2.564e-05 3.101e-05 0.00% Amr::initSubcycle() 1 9.587e-06 1.448e-05 2.983e-05 0.00% Castro::expand_state() 10 1.83e-05 2.49e-05 2.978e-05 0.00% Castro::check_for_nan() 20 2.343e-05 2.448e-05 2.55e-05 0.00% Castro::post_init() 1 1.386e-05 1.633e-05 2.474e-05 0.00% Castro::post_timestep() 10 1.368e-05 1.63e-05 2.188e-05 0.00% Gravity::set_mass_offset() 10 8.449e-06 1.342e-05 2.092e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.381e-05 1.758e-05 2.081e-05 0.00% Castro::create_source_corrector() 10 8.304e-06 9.611e-06 1.352e-05 0.00% Gravity::swapTimeLevels() 10 8.822e-06 1.063e-05 1.239e-05 0.00% Castro::computeNewDt() 9 7.261e-06 8.636e-06 1.092e-05 0.00% Castro::retry_advance_ctu() 10 6.65e-06 7.745e-06 9.384e-06 0.00% Castro::FluxRegCrseInit 10 6.282e-06 7.12e-06 7.947e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.672e-06 5.729e-06 7.365e-06 0.00% Amr::init() 1 1.994e-06 3.308e-06 7.305e-06 0.00% Castro::post_regrid() 1 2.418e-06 3.255e-06 5.138e-06 0.00% Castro::computeInitialDt() 2 3.058e-06 4.126e-06 5.108e-06 0.00% Amr::InitializeInit() 1 1.943e-06 2.416e-06 4.823e-06 0.00% Castro::FluxRegFineAdd() 10 2.124e-06 2.538e-06 3.136e-06 0.00% Amr::initialInit() 1 1.46e-06 1.875e-06 2.343e-06 0.00% DistributionMapping::Distribute() 1 8.55e-07 1.146e-06 1.413e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.824 3.825 3.825 100.00% Amr::coarseTimeStep() 10 3.593 3.593 3.593 93.92% Amr::timeStep() 10 3.579 3.579 3.58 93.59% Castro::advance() 10 3.563 3.564 3.564 93.19% Castro::subcycle_advance_ctu() 10 3.469 3.475 3.484 91.10% Castro::do_advance_ctu() 10 3.469 3.475 3.484 91.09% Castro::construct_ctu_hydro_source() 10 2.714 2.718 2.723 71.20% Gravity::make_radial_gravity() 21 0.3069 0.3181 0.337 8.81% check_for_negative_density() 10 0.01083 0.1605 0.281 7.35% AmrLevel::FillPatch() 41 0.181 0.2053 0.2201 5.75% Gravity::get_new_grav_vector() 11 0.2159 0.2171 0.2188 5.72% Castro::construct_old_gravity() 10 0.176 0.1862 0.203 5.31% Gravity::get_old_grav_vector() 10 0.1754 0.1855 0.2024 5.29% Castro::construct_new_gravity() 10 0.1915 0.1926 0.1938 5.07% FillPatchIterator::Initialize 41 0.1522 0.1735 0.1897 4.96% Castro::initialize_do_advance() 10 0.1586 0.1726 0.1843 4.82% Amr::init() 1 0.1823 0.1825 0.1826 4.77% Amr::initialInit() 1 0.1693 0.1696 0.1698 4.44% FillPatchIterator::FillFromLevel0() 41 0.1151 0.129 0.1573 4.11% FillPatchSingleLevel 41 0.1149 0.1289 0.1571 4.11% Amr::InitializeInit() 1 0.06849 0.1059 0.1415 3.70% Amr::defBaseLevel() 1 0.06849 0.1059 0.1415 3.70% Castro::expand_state() 10 0.1034 0.1179 0.1284 3.36% FabArray::ParallelCopy() 41 0.08471 0.09677 0.1282 3.35% Castro::initData() 1 0.05178 0.08927 0.1246 3.26% Castro::clean_state() 62 0.1144 0.1158 0.1174 3.07% Castro::estTimeStep() 21 0.02509 0.06974 0.1133 2.96% Amr::FinalizeInit() 1 0.0283 0.06364 0.1012 2.65% Castro::do_old_sources() 10 0.09136 0.09642 0.09945 2.60% FabArray::setVal() 143 0.07456 0.08322 0.09183 2.40% FabArray::ParallelCopy_finish() 41 0.04013 0.05373 0.09117 2.38% Castro::initialize_advance() 10 0.07488 0.0847 0.09057 2.37% amrex::Copy() 193 0.06189 0.07961 0.08928 2.33% Castro::do_new_sources() 10 0.06218 0.06943 0.08018 2.10% Castro::computeInitialDt() 2 0.00223 0.0377 0.07521 1.97% Castro::computeTemp() 63 0.06709 0.06824 0.06941 1.81% Amr::writePlotFile() 2 0.05657 0.05675 0.05693 1.49% Castro::reset_internal_energy(MultiFab) 63 0.04711 0.04834 0.04924 1.29% Castro::reset_internal_energy(Fab) 1008 0.04683 0.04805 0.04894 1.28% FabArray::ParallelCopy_nowait() 41 0.03689 0.04296 0.04503 1.18% Castro::normalize_species() 62 0.04123 0.04221 0.04373 1.14% Castro::construct_new_source() 50 0.0308 0.03376 0.03818 1.00% StateDataPhysBCFunct::() 41 0.02887 0.03201 0.03521 0.92% StateData::FillBoundary(geom) 41 0.02877 0.03189 0.03506 0.92% Gravity::interpolate_monopole_grav() 21 0.02777 0.02987 0.03168 0.83% Castro::finalize_do_advance() 10 0.01297 0.0238 0.0314 0.82% Castro::construct_new_gravity_source() 10 0.02436 0.0269 0.03089 0.81% Castro::post_init() 1 0.02527 0.02543 0.02562 0.67% Castro::apply_source_to_state() 20 0.01366 0.01492 0.01628 0.43% FabArray::Saxpy() 20 0.0136 0.01487 0.01623 0.42% Castro::post_timestep() 10 0.01494 0.0156 0.01602 0.42% FabArray::setDomainBndry() 41 0.006551 0.01117 0.01444 0.38% VisMF::Write(FabArray) 2 0.009179 0.01009 0.01252 0.33% Castro::check_for_nan() 20 0.01018 0.01105 0.01199 0.31% MultiFab::contains_nan() 20 0.01015 0.01103 0.01197 0.31% Castro::construct_old_source() 50 0.007902 0.01062 0.01167 0.31% Castro::construct_old_gravity_source() 10 0.007835 0.01055 0.01158 0.30% Castro::Castro() 1 0.01105 0.01111 0.01122 0.29% Castro::computeNewDt() 9 0.009364 0.009377 0.009389 0.25% Castro::enforce_min_density() 62 0.005791 0.006152 0.006462 0.17% Castro::initMFs() 1 0.006294 0.00634 0.006411 0.17% AmrLevel::AmrLevel(dm) 1 0.005308 0.005324 0.005352 0.14% StateData::define() 4 0.005288 0.005307 0.005334 0.14% Castro::finalize_advance() 10 0.003062 0.003759 0.004546 0.12% Castro::swap_state_time_levels() 10 0.003127 0.004093 0.004377 0.11% Castro::post_regrid() 1 0.00162 0.001661 0.001697 0.04% Castro::buildMetrics() 1 0.001644 0.001658 0.00168 0.04% Amr::InitAmr() 1 0.0002796 0.0003332 0.00051 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.282e-05 0.0002052 0.0002613 0.01% DistributionMapping::LeastUsedCPUs() 1 6.503e-06 0.0001983 0.0002535 0.01% Castro::enforce_consistent_e() 1 7.969e-05 9.262e-05 0.0001109 0.00% FabArrayBase::getCPC() 41 7.253e-05 8.488e-05 9.842e-05 0.00% Amr::writeSmallPlotFile() 1 3.239e-05 4.462e-05 6.558e-05 0.00% Castro::enforce_speed_limit() 62 2.548e-05 2.861e-05 3.207e-05 0.00% FabArrayBase::CPC::define() 2 2.117e-05 2.564e-05 3.101e-05 0.00% Amr::initSubcycle() 1 9.587e-06 1.448e-05 2.983e-05 0.00% Gravity::set_mass_offset() 10 8.449e-06 1.342e-05 2.092e-05 0.00% Castro::create_source_corrector() 10 8.304e-06 9.611e-06 1.352e-05 0.00% Gravity::swapTimeLevels() 10 8.822e-06 1.063e-05 1.239e-05 0.00% Castro::retry_advance_ctu() 10 6.65e-06 7.745e-06 9.384e-06 0.00% Castro::FluxRegCrseInit 10 6.282e-06 7.12e-06 7.947e-06 0.00% Castro::FluxRegFineAdd() 10 2.124e-06 2.538e-06 3.136e-06 0.00% DistributionMapping::Distribute() 1 8.55e-07 1.146e-06 1.413e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 26 B 37 B 71 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.12-24-g75571e2dcbf2) finalized