Initializing AMReX (24.01)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.01) initialized Starting run at 16:41:44 UTC on 2024-01-02. Successfully read inputs file ... Castro git describe: 24.01-1-gf293d91f4 AMReX git describe: 24.01 Microphysics git describe: 24.01-3-g6dc51ad9 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.012772311 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.363501581 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.349639553 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.35598166 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.342320159 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.371747984 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.341140395 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.319715296 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.320941273 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.317920355 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.319523271 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007397444 seconds Ending run at 16:41:47 UTC on 2024-01-02. Run time = 3.637787835 Run time without initialization = 3.415521736 Average number of zones advanced per microsecond: 0.768 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.637 ... 3.638 ... 3.638 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3764 2.4360 2.4857 68.33% Gravity::make_radial_gravity() 21 0.3206 0.3281 0.3472 9.54% Castro::initData() 1 0.04726 0.09123 0.1564 4.30% Castro::estTimeStep() 21 0.03693 0.09899 0.1482 4.07% check_for_negative_density() 10 0.02006 0.0733 0.1372 3.77% amrex::Copy() 193 0.06159 0.07763 0.08727 2.40% FabArray::ParallelCopy_finish() 41 0.03507 0.05247 0.08534 2.35% FabArray::setVal() 143 0.05936 0.06827 0.07918 2.18% Castro::reset_internal_energy(Fab) 1008 0.04785 0.04912 0.05031 1.38% StateData::FillBoundary(geom) 41 0.03889 0.04174 0.04408 1.21% FabArray::ParallelCopy_nowait() 41 0.03433 0.04062 0.04293 1.18% Castro::normalize_species() 62 0.04026 0.04141 0.04268 1.17% FillPatchIterator::Initialize 41 0.0277 0.0325 0.03437 0.94% Gravity::interpolate_monopole_grav() 21 0.02699 0.02774 0.02981 0.82% Castro::construct_new_gravity_source() 10 0.02047 0.02243 0.02517 0.69% Castro::initialize_do_advance() 10 0.01215 0.01749 0.02046 0.56% Castro::computeTemp() 63 0.01836 0.01898 0.01952 0.54% Castro::initialize_advance() 10 0.004042 0.01001 0.01369 0.38% FabArray::Saxpy() 20 0.01083 0.01258 0.01348 0.37% FabArray::setDomainBndry() 41 0.006743 0.01099 0.01331 0.37% VisMF::Write(FabArray) 2 0.008882 0.009368 0.01159 0.32% MultiFab::contains_nan() 20 0.009672 0.01044 0.01129 0.31% Castro::construct_old_gravity_source() 10 0.006936 0.009416 0.009987 0.27% Amr::writePlotFile() 2 0.006092 0.008511 0.009237 0.25% Castro::initMFs() 1 0.006371 0.006806 0.008093 0.22% Castro::construct_new_source() 50 0.005691 0.006258 0.006438 0.18% Castro::enforce_min_density() 62 0.005767 0.006006 0.006316 0.17% StateData::define() 4 0.005224 0.005457 0.006021 0.17% Gravity::get_new_grav_vector() 11 0.002936 0.004018 0.005835 0.16% main() 1 0.003961 0.004583 0.004982 0.14% Castro::swap_state_time_levels() 10 0.003167 0.004147 0.004392 0.12% Amr::coarseTimeStep() 10 0.00133 0.002453 0.003317 0.09% Gravity::get_old_grav_vector() 10 0.001469 0.002062 0.002408 0.07% Castro::buildMetrics() 1 0.001514 0.001576 0.001732 0.05% Castro::finalize_do_advance() 10 0.0005094 0.001133 0.001507 0.04% AmrLevel::FillPatch() 41 0.0007901 0.0009399 0.001144 0.03% Amr::InitAmr() 1 0.0003451 0.0003908 0.0004831 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002864 0.0003113 0.0003489 0.01% Amr::timeStep() 10 0.0001703 0.0002063 0.0003401 0.01% DistributionMapping::LeastUsedCPUs() 1 1.06e-05 0.0001284 0.0001729 0.00% Castro::clean_state() 62 0.0001313 0.0001462 0.0001579 0.00% Castro::do_advance_ctu() 10 0.0001103 0.000136 0.0001546 0.00% FillPatchIterator::FillFromLevel0() 41 9.143e-05 0.0001151 0.0001466 0.00% Castro::enforce_consistent_e() 1 8.036e-05 9.186e-05 0.0001364 0.00% StateDataPhysBCFunct::() 41 8.384e-05 0.0001021 0.000111 0.00% Castro::finalize_advance() 10 7.713e-05 9.087e-05 0.000111 0.00% Castro::do_old_sources() 10 7.351e-05 9.259e-05 0.0001037 0.00% FabArray::ParallelCopy() 41 6.778e-05 7.646e-05 8.275e-05 0.00% Castro::Castro() 1 5.758e-05 6.868e-05 8.094e-05 0.00% FillPatchSingleLevel 41 6.437e-05 7.274e-05 8.075e-05 0.00% Amr::writeSmallPlotFile() 1 3.082e-05 5.874e-05 7.775e-05 0.00% Castro::construct_old_source() 50 4.97e-05 6.267e-05 7.322e-05 0.00% Amr::FinalizeInit() 1 4.197e-06 1.292e-05 6.884e-05 0.00% Castro::do_new_sources() 10 5.04e-05 6.328e-05 6.874e-05 0.00% FabArrayBase::getCPC() 41 4.139e-05 4.883e-05 6.66e-05 0.00% Castro::advance() 10 3.264e-05 4.6e-05 5.765e-05 0.00% Castro::construct_new_gravity() 10 3.358e-05 4.354e-05 5.535e-05 0.00% Castro::subcycle_advance_ctu() 10 4.037e-05 4.83e-05 5.315e-05 0.00% Castro::construct_old_gravity() 10 3.785e-05 4.338e-05 5.244e-05 0.00% Castro::apply_source_to_state() 20 3.273e-05 4.286e-05 4.829e-05 0.00% Amr::initSubcycle() 1 9.686e-06 1.35e-05 3.459e-05 0.00% Castro::enforce_speed_limit() 62 2.481e-05 2.722e-05 3.259e-05 0.00% AmrLevel::AmrLevel(dm) 1 2.48e-05 2.699e-05 2.965e-05 0.00% FabArrayBase::CPC::define() 2 2.24e-05 2.576e-05 2.853e-05 0.00% Castro::expand_state() 10 2.02e-05 2.417e-05 2.775e-05 0.00% Amr::defBaseLevel() 1 1.214e-05 1.706e-05 2.375e-05 0.00% Castro::check_for_nan() 20 1.786e-05 1.922e-05 1.997e-05 0.00% Castro::post_timestep() 10 1.175e-05 1.511e-05 1.732e-05 0.00% Gravity::set_mass_offset() 10 8.402e-06 1.081e-05 1.321e-05 0.00% Gravity::swapTimeLevels() 10 9.717e-06 1.076e-05 1.237e-05 0.00% Castro::create_source_corrector() 10 6.542e-06 8.331e-06 1.17e-05 0.00% Castro::computeNewDt() 9 7.882e-06 9.168e-06 1.062e-05 0.00% Castro::FluxRegCrseInit 10 5.618e-06 7.518e-06 9.555e-06 0.00% Castro::retry_advance_ctu() 10 6.5e-06 7.141e-06 8.451e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.634e-06 5.441e-06 7.003e-06 0.00% Amr::InitializeInit() 1 1.974e-06 2.773e-06 4.94e-06 0.00% Castro::computeInitialDt() 2 2.707e-06 4.011e-06 4.871e-06 0.00% Castro::post_init() 1 2.702e-06 3.389e-06 4.015e-06 0.00% Castro::post_regrid() 1 2.079e-06 3.053e-06 3.865e-06 0.00% Amr::init() 1 1.783e-06 2.136e-06 2.534e-06 0.00% Amr::initialInit() 1 1.329e-06 1.825e-06 2.436e-06 0.00% Castro::FluxRegFineAdd() 10 1.898e-06 2.067e-06 2.243e-06 0.00% DistributionMapping::Distribute() 1 8.36e-07 1.245e-06 2.212e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.637 3.637 3.638 100.00% Amr::coarseTimeStep() 10 3.403 3.403 3.403 93.55% Amr::timeStep() 10 3.389 3.39 3.391 93.22% Castro::advance() 10 3.374 3.374 3.375 92.77% Castro::subcycle_advance_ctu() 10 3.294 3.302 3.312 91.05% Castro::do_advance_ctu() 10 3.294 3.302 3.312 91.05% Castro::construct_ctu_hydro_source() 10 2.526 2.53 2.534 69.65% Gravity::make_radial_gravity() 21 0.3374 0.3445 0.3601 9.90% Gravity::get_new_grav_vector() 11 0.2273 0.2293 0.2311 6.35% AmrLevel::FillPatch() 41 0.1908 0.2098 0.2225 6.12% Amr::init() 1 0.2216 0.2217 0.2218 6.10% Castro::construct_old_gravity() 10 0.1945 0.2008 0.2132 5.86% Gravity::get_old_grav_vector() 10 0.1939 0.2002 0.2126 5.84% Amr::initialInit() 1 0.2084 0.2087 0.2089 5.74% Castro::construct_new_gravity() 10 0.2022 0.2033 0.2044 5.62% FillPatchIterator::Initialize 41 0.163 0.1788 0.1943 5.34% Castro::initialize_do_advance() 10 0.1632 0.1735 0.1804 4.96% Amr::InitializeInit() 1 0.0673 0.1118 0.1786 4.91% Amr::defBaseLevel() 1 0.0673 0.1118 0.1786 4.91% Castro::initData() 1 0.05129 0.09532 0.1609 4.42% FillPatchIterator::FillFromLevel0() 41 0.1172 0.1353 0.1599 4.40% FillPatchSingleLevel 41 0.1171 0.1352 0.1598 4.39% Castro::estTimeStep() 21 0.03693 0.09899 0.1482 4.07% Amr::FinalizeInit() 1 0.02988 0.09691 0.1415 3.89% check_for_negative_density() 10 0.02006 0.0733 0.1372 3.77% Castro::expand_state() 10 0.1069 0.1197 0.1271 3.49% FabArray::ParallelCopy() 41 0.07652 0.09325 0.1199 3.29% Castro::clean_state() 62 0.1128 0.1151 0.1172 3.22% Castro::computeInitialDt() 2 0.002563 0.0695 0.114 3.13% Castro::do_old_sources() 10 0.08981 0.09395 0.09892 2.72% amrex::Copy() 193 0.06159 0.07763 0.08727 2.40% FabArray::ParallelCopy_finish() 41 0.03507 0.05247 0.08534 2.35% FabArray::setVal() 143 0.05936 0.06827 0.07918 2.18% Castro::initialize_advance() 10 0.05798 0.06903 0.07663 2.11% Castro::do_new_sources() 10 0.05759 0.06308 0.07136 1.96% Castro::computeTemp() 63 0.06703 0.06841 0.07014 1.93% Castro::reset_internal_energy(MultiFab) 63 0.04817 0.04943 0.05062 1.39% Castro::reset_internal_energy(Fab) 1008 0.04785 0.04912 0.05031 1.38% StateDataPhysBCFunct::() 41 0.03898 0.04184 0.04416 1.21% StateData::FillBoundary(geom) 41 0.03889 0.04174 0.04408 1.21% FabArray::ParallelCopy_nowait() 41 0.03443 0.0407 0.043 1.18% Castro::normalize_species() 62 0.04026 0.04141 0.04268 1.17% Castro::construct_new_source() 50 0.02677 0.02869 0.03147 0.87% Gravity::interpolate_monopole_grav() 21 0.02699 0.02774 0.02981 0.82% Castro::post_init() 1 0.02673 0.0271 0.02735 0.75% Castro::finalize_do_advance() 10 0.01253 0.02127 0.02734 0.75% Castro::construct_new_gravity_source() 10 0.02047 0.02243 0.02517 0.69% Amr::writePlotFile() 2 0.02035 0.02051 0.02077 0.57% Castro::post_timestep() 10 0.01529 0.01572 0.01654 0.45% Castro::apply_source_to_state() 20 0.01088 0.01262 0.01352 0.37% FabArray::Saxpy() 20 0.01083 0.01258 0.01348 0.37% FabArray::setDomainBndry() 41 0.006743 0.01099 0.01331 0.37% Castro::Castro() 1 0.01051 0.01081 0.01165 0.32% VisMF::Write(FabArray) 2 0.008882 0.009368 0.01159 0.32% Castro::check_for_nan() 20 0.009692 0.01046 0.01131 0.31% MultiFab::contains_nan() 20 0.009672 0.01044 0.01129 0.31% Castro::construct_old_source() 50 0.006989 0.009479 0.01006 0.28% Castro::construct_old_gravity_source() 10 0.006936 0.009416 0.009987 0.27% Castro::computeNewDt() 9 0.009365 0.009374 0.009383 0.26% Castro::initMFs() 1 0.006371 0.006806 0.008093 0.22% Castro::enforce_min_density() 62 0.005767 0.006006 0.006316 0.17% AmrLevel::AmrLevel(dm) 1 0.005251 0.005484 0.006047 0.17% StateData::define() 4 0.005224 0.005457 0.006021 0.17% Castro::swap_state_time_levels() 10 0.003167 0.004147 0.004392 0.12% Castro::finalize_advance() 10 0.002918 0.00332 0.003778 0.10% Castro::buildMetrics() 1 0.001643 0.001711 0.001896 0.05% Castro::post_regrid() 1 0.001497 0.00158 0.00186 0.05% Amr::InitAmr() 1 0.0003551 0.0004044 0.0005177 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.982e-05 0.0001351 0.0001806 0.00% DistributionMapping::LeastUsedCPUs() 1 1.06e-05 0.0001284 0.0001729 0.00% Castro::enforce_consistent_e() 1 8.036e-05 9.186e-05 0.0001364 0.00% FabArrayBase::getCPC() 41 6.474e-05 7.459e-05 9.477e-05 0.00% Amr::writeSmallPlotFile() 1 3.082e-05 5.874e-05 7.775e-05 0.00% Amr::initSubcycle() 1 9.686e-06 1.35e-05 3.459e-05 0.00% Castro::enforce_speed_limit() 62 2.481e-05 2.722e-05 3.259e-05 0.00% FabArrayBase::CPC::define() 2 2.24e-05 2.576e-05 2.853e-05 0.00% Gravity::set_mass_offset() 10 8.402e-06 1.081e-05 1.321e-05 0.00% Gravity::swapTimeLevels() 10 9.717e-06 1.076e-05 1.237e-05 0.00% Castro::create_source_corrector() 10 6.542e-06 8.331e-06 1.17e-05 0.00% Castro::FluxRegCrseInit 10 5.618e-06 7.518e-06 9.555e-06 0.00% Castro::retry_advance_ctu() 10 6.5e-06 7.141e-06 8.451e-06 0.00% Castro::FluxRegFineAdd() 10 1.898e-06 2.067e-06 2.243e-06 0.00% DistributionMapping::Distribute() 1 8.36e-07 1.245e-06 2.212e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 27 B 32 B 39 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.01) finalized