Initializing AMReX (24.01)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.01) initialized Starting run at 06:33:13 UTC on 2024-01-03. Successfully read inputs file ... Castro git describe: 24.01-2-g3e624f0de AMReX git describe: 24.01 Microphysics git describe: 24.01-3-g6dc51ad9 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.012697913 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.353264291 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.336989314 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.332140453 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.326759191 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.329209962 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.362665508 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.313292998 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.312033514 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.313000581 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.312689539 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007396888 seconds Ending run at 06:33:17 UTC on 2024-01-03. Run time = 3.526355896 Run time without initialization = 3.305241789 Average number of zones advanced per microsecond: 0.793 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.525 ... 3.526 ... 3.526 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3377 2.3597 2.4142 68.46% Gravity::make_radial_gravity() 21 0.2943 0.3141 0.327 9.27% Castro::initData() 1 0.04854 0.09429 0.151 4.28% Castro::estTimeStep() 21 0.03035 0.08994 0.1408 3.99% check_for_negative_density() 10 0.01784 0.07594 0.1015 2.88% amrex::Copy() 193 0.06527 0.07501 0.09237 2.62% FabArray::ParallelCopy_finish() 41 0.0385 0.05422 0.08016 2.27% FabArray::setVal() 143 0.0568 0.06595 0.07466 2.12% Castro::reset_internal_energy(Fab) 1008 0.04499 0.04693 0.04992 1.42% Castro::normalize_species() 62 0.04152 0.04217 0.0434 1.23% FabArray::ParallelCopy_nowait() 41 0.03477 0.03947 0.04219 1.20% StateData::FillBoundary(geom) 41 0.02968 0.03205 0.03377 0.96% FillPatchIterator::Initialize 41 0.02715 0.03135 0.03374 0.96% Gravity::interpolate_monopole_grav() 21 0.02731 0.02951 0.03095 0.88% Castro::construct_new_gravity_source() 10 0.02178 0.02323 0.02541 0.72% Castro::computeTemp() 63 0.01869 0.01934 0.0207 0.59% Castro::initialize_do_advance() 10 0.01121 0.01522 0.01757 0.50% Castro::initialize_advance() 10 0.00394 0.009815 0.01386 0.39% MultiFab::contains_nan() 20 0.00956 0.01074 0.0131 0.37% FabArray::Saxpy() 20 0.01057 0.01163 0.01281 0.36% FabArray::setDomainBndry() 41 0.006577 0.009526 0.01189 0.34% VisMF::Write(FabArray) 2 0.008795 0.009341 0.01166 0.33% Castro::initMFs() 1 0.006168 0.007413 0.009759 0.28% Castro::construct_old_gravity_source() 10 0.006864 0.008562 0.009549 0.27% Amr::writePlotFile() 2 0.005914 0.008759 0.009509 0.27% StateData::define() 4 0.005142 0.006086 0.00778 0.22% Castro::enforce_min_density() 62 0.007264 0.007425 0.007588 0.22% Castro::construct_new_source() 50 0.005697 0.006079 0.006618 0.19% main() 1 0.003519 0.004398 0.005012 0.14% Castro::swap_state_time_levels() 10 0.003006 0.004007 0.004239 0.12% Gravity::get_new_grav_vector() 11 0.002853 0.00334 0.003739 0.11% Amr::coarseTimeStep() 10 0.001598 0.001995 0.002327 0.07% Gravity::get_old_grav_vector() 10 0.001519 0.001951 0.002295 0.07% Castro::buildMetrics() 1 0.00146 0.001739 0.002247 0.06% Castro::finalize_do_advance() 10 0.0005939 0.0008786 0.001137 0.03% AmrLevel::FillPatch() 41 0.0006654 0.000785 0.0009009 0.03% Amr::InitAmr() 1 0.0003554 0.0004651 0.0006741 0.02% Amr::timeStep() 10 0.0001384 0.0002084 0.0004864 0.01% DistributionMapping::LeastUsedCPUs() 1 7.863e-06 0.0002362 0.0003463 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002693 0.0002801 0.0003084 0.01% StateDataPhysBCFunct::() 41 7.454e-05 0.0001086 0.0001752 0.00% Castro::do_advance_ctu() 10 0.000115 0.000137 0.0001666 0.00% Castro::clean_state() 62 0.0001373 0.0001537 0.000163 0.00% Castro::finalize_advance() 10 6.456e-05 9.798e-05 0.0001366 0.00% FillPatchIterator::FillFromLevel0() 41 8.793e-05 0.000112 0.0001345 0.00% Castro::do_old_sources() 10 7.362e-05 8.76e-05 0.0001023 0.00% Castro::enforce_consistent_e() 1 7.662e-05 8.535e-05 9.777e-05 0.00% FabArray::ParallelCopy() 41 6.377e-05 8.272e-05 9.734e-05 0.00% Castro::construct_old_source() 50 5.624e-05 7.012e-05 9.669e-05 0.00% Castro::do_new_sources() 10 5.322e-05 6.485e-05 9.149e-05 0.00% FillPatchSingleLevel 41 6.062e-05 6.737e-05 8.289e-05 0.00% Castro::Castro() 1 5.686e-05 6.454e-05 7.699e-05 0.00% FabArrayBase::getCPC() 41 3.762e-05 4.838e-05 6.877e-05 0.00% Amr::writeSmallPlotFile() 1 2.978e-05 5.268e-05 6.781e-05 0.00% Castro::subcycle_advance_ctu() 10 2.921e-05 4.494e-05 6.467e-05 0.00% Amr::FinalizeInit() 1 4.607e-06 1.228e-05 6.205e-05 0.00% Castro::advance() 10 3.71e-05 4.819e-05 6.174e-05 0.00% Castro::construct_old_gravity() 10 3.135e-05 4.003e-05 5.185e-05 0.00% Castro::apply_source_to_state() 20 3.543e-05 4.587e-05 5.065e-05 0.00% Castro::construct_new_gravity() 10 2.982e-05 3.384e-05 4.34e-05 0.00% Castro::enforce_speed_limit() 62 2.072e-05 2.705e-05 3.718e-05 0.00% FabArrayBase::CPC::define() 2 2.12e-05 2.533e-05 3.489e-05 0.00% Castro::expand_state() 10 1.825e-05 2.335e-05 3.02e-05 0.00% Castro::check_for_nan() 20 2.092e-05 2.318e-05 2.507e-05 0.00% Amr::defBaseLevel() 1 1.527e-05 1.898e-05 2.406e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.512e-05 1.869e-05 2.236e-05 0.00% Castro::post_init() 1 1.449e-05 1.642e-05 2.094e-05 0.00% Gravity::swapTimeLevels() 10 6.521e-06 1.084e-05 2.041e-05 0.00% Amr::initSubcycle() 1 9.884e-06 1.222e-05 1.711e-05 0.00% Castro::post_timestep() 10 1.068e-05 1.335e-05 1.455e-05 0.00% Gravity::set_mass_offset() 10 8.436e-06 1.001e-05 1.266e-05 0.00% Castro::create_source_corrector() 10 6.407e-06 8.484e-06 1.043e-05 0.00% Castro::FluxRegCrseInit 10 6.588e-06 7.938e-06 9.827e-06 0.00% Castro::computeNewDt() 9 7.802e-06 8.455e-06 9.642e-06 0.00% Castro::retry_advance_ctu() 10 6.109e-06 7.075e-06 8.082e-06 0.00% Castro::post_regrid() 1 2.03e-06 4.168e-06 7.859e-06 0.00% Castro::computeInitialDt() 2 3.36e-06 3.986e-06 5.646e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.614e-06 4.545e-06 5.344e-06 0.00% Amr::InitializeInit() 1 1.898e-06 2.435e-06 4.692e-06 0.00% Amr::init() 1 2.014e-06 2.312e-06 2.738e-06 0.00% Castro::FluxRegFineAdd() 10 1.905e-06 2.233e-06 2.64e-06 0.00% Amr::initialInit() 1 1.262e-06 1.464e-06 1.649e-06 0.00% DistributionMapping::Distribute() 1 8.88e-07 1.129e-06 1.392e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.525 3.526 3.526 100.00% Amr::coarseTimeStep() 10 3.293 3.293 3.293 93.38% Amr::timeStep() 10 3.28 3.28 3.281 93.03% Castro::advance() 10 3.264 3.264 3.265 92.57% Castro::subcycle_advance_ctu() 10 3.187 3.192 3.205 90.90% Castro::do_advance_ctu() 10 3.187 3.192 3.205 90.89% Castro::construct_ctu_hydro_source() 10 2.453 2.456 2.46 69.77% Gravity::make_radial_gravity() 21 0.3099 0.3296 0.3413 9.68% Amr::init() 1 0.2202 0.2205 0.2206 6.26% Gravity::get_new_grav_vector() 11 0.2099 0.2123 0.2138 6.06% AmrLevel::FillPatch() 41 0.1838 0.1969 0.2105 5.97% Castro::construct_old_gravity() 10 0.1831 0.2004 0.2103 5.96% Gravity::get_old_grav_vector() 10 0.182 0.1997 0.2097 5.95% Amr::initialInit() 1 0.2067 0.2072 0.2076 5.89% FillPatchIterator::Initialize 41 0.1508 0.1671 0.1864 5.28% Castro::construct_new_gravity() 10 0.1838 0.1852 0.1863 5.28% Amr::InitializeInit() 1 0.06714 0.1153 0.1762 5.00% Amr::defBaseLevel() 1 0.06714 0.1153 0.1762 5.00% Castro::initialize_do_advance() 10 0.152 0.1625 0.1757 4.98% Castro::initData() 1 0.05228 0.09799 0.1546 4.38% FillPatchIterator::FillFromLevel0() 41 0.1137 0.1262 0.151 4.28% FillPatchSingleLevel 41 0.1136 0.1261 0.1509 4.28% Castro::estTimeStep() 21 0.03035 0.08994 0.1408 3.99% Amr::FinalizeInit() 1 0.03127 0.09184 0.1405 3.98% Castro::expand_state() 10 0.1037 0.1107 0.1214 3.44% Castro::clean_state() 62 0.1121 0.1154 0.1199 3.40% FabArray::ParallelCopy() 41 0.08084 0.09384 0.117 3.32% Castro::computeInitialDt() 2 0.002347 0.06344 0.1116 3.17% check_for_negative_density() 10 0.01784 0.07594 0.1015 2.88% Castro::do_old_sources() 10 0.08933 0.09269 0.09605 2.72% amrex::Copy() 193 0.06527 0.07501 0.09237 2.62% FabArray::ParallelCopy_finish() 41 0.0385 0.05422 0.08016 2.27% FabArray::setVal() 143 0.0568 0.06595 0.07466 2.12% Castro::initialize_advance() 10 0.05519 0.06898 0.07431 2.11% Castro::computeTemp() 63 0.06396 0.06654 0.07089 2.01% Castro::do_new_sources() 10 0.05831 0.06133 0.06736 1.91% Castro::reset_internal_energy(MultiFab) 63 0.04526 0.04721 0.05019 1.42% Castro::reset_internal_energy(Fab) 1008 0.04499 0.04693 0.04992 1.42% Castro::normalize_species() 62 0.04152 0.04217 0.0434 1.23% FabArray::ParallelCopy_nowait() 41 0.03484 0.03954 0.04226 1.20% StateDataPhysBCFunct::() 41 0.02975 0.03215 0.03386 0.96% StateData::FillBoundary(geom) 41 0.02968 0.03205 0.03377 0.96% Castro::construct_new_source() 50 0.02748 0.02931 0.03203 0.91% Gravity::interpolate_monopole_grav() 21 0.02731 0.02951 0.03095 0.88% Castro::post_init() 1 0.0267 0.02803 0.02875 0.82% Castro::construct_new_gravity_source() 10 0.02178 0.02323 0.02541 0.72% Castro::finalize_do_advance() 10 0.01167 0.01817 0.02154 0.61% Amr::writePlotFile() 2 0.02025 0.02076 0.02112 0.60% Castro::post_timestep() 10 0.01569 0.01592 0.01607 0.46% Castro::Castro() 1 0.009403 0.01098 0.01379 0.39% Castro::check_for_nan() 20 0.009585 0.01076 0.01313 0.37% MultiFab::contains_nan() 20 0.00956 0.01074 0.0131 0.37% Castro::apply_source_to_state() 20 0.0106 0.01167 0.01286 0.36% FabArray::Saxpy() 20 0.01057 0.01163 0.01281 0.36% FabArray::setDomainBndry() 41 0.006577 0.009526 0.01189 0.34% VisMF::Write(FabArray) 2 0.008795 0.009341 0.01166 0.33% Castro::initMFs() 1 0.006168 0.007413 0.009759 0.28% Castro::construct_old_source() 50 0.00692 0.008632 0.009646 0.27% Castro::construct_old_gravity_source() 10 0.006864 0.008562 0.009549 0.27% Castro::computeNewDt() 9 0.009219 0.009227 0.009232 0.26% AmrLevel::AmrLevel(dm) 1 0.005161 0.006105 0.007802 0.22% StateData::define() 4 0.005142 0.006086 0.00778 0.22% Castro::enforce_min_density() 62 0.007264 0.007425 0.007588 0.22% Castro::swap_state_time_levels() 10 0.003006 0.004007 0.004239 0.12% Castro::finalize_advance() 10 0.003141 0.003381 0.003528 0.10% Castro::post_regrid() 1 0.001487 0.00169 0.002715 0.08% Castro::buildMetrics() 1 0.00157 0.001893 0.002468 0.07% Amr::InitAmr() 1 0.0003659 0.0004773 0.0006904 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.342e-05 0.0002419 0.0003528 0.01% DistributionMapping::LeastUsedCPUs() 1 7.863e-06 0.0002362 0.0003463 0.01% FabArrayBase::getCPC() 41 6.05e-05 7.371e-05 0.0001037 0.00% Castro::enforce_consistent_e() 1 7.662e-05 8.535e-05 9.777e-05 0.00% Amr::writeSmallPlotFile() 1 2.978e-05 5.268e-05 6.781e-05 0.00% Castro::enforce_speed_limit() 62 2.072e-05 2.705e-05 3.718e-05 0.00% FabArrayBase::CPC::define() 2 2.12e-05 2.533e-05 3.489e-05 0.00% Gravity::swapTimeLevels() 10 6.521e-06 1.084e-05 2.041e-05 0.00% Amr::initSubcycle() 1 9.884e-06 1.222e-05 1.711e-05 0.00% Gravity::set_mass_offset() 10 8.436e-06 1.001e-05 1.266e-05 0.00% Castro::create_source_corrector() 10 6.407e-06 8.484e-06 1.043e-05 0.00% Castro::FluxRegCrseInit 10 6.588e-06 7.938e-06 9.827e-06 0.00% Castro::retry_advance_ctu() 10 6.109e-06 7.075e-06 8.082e-06 0.00% Castro::FluxRegFineAdd() 10 1.905e-06 2.233e-06 2.64e-06 0.00% DistributionMapping::Distribute() 1 8.88e-07 1.129e-06 1.392e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 34 B 43 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.01) finalized