Initializing AMReX (24.01-1-gf1ec8df75c56)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.01-1-gf1ec8df75c56) initialized Starting run at 23:55:37 UTC on 2024-01-05. Successfully read inputs file ... Castro git describe: 24.01-7-g0790f0902 AMReX git describe: 24.01-1-gf1ec8df75 Microphysics git describe: 24.01-7-gfc722142 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.012249938 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.355978825 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.361071316 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.320258049 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.319777039 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.323332468 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.354578545 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.319955701 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.312354752 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.310218531 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.312263673 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007587137 seconds Ending run at 23:55:40 UTC on 2024-01-05. Run time = 3.485313559 Run time without initialization = 3.303149345 Average number of zones advanced per microsecond: 0.794 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.484 ... 3.485 ... 3.485 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2853 2.3638 2.4048 69.00% Gravity::make_radial_gravity() 21 0.2895 0.2977 0.3132 8.98% check_for_negative_density() 10 0.03861 0.08162 0.1639 4.70% Castro::initData() 1 0.04855 0.08713 0.1191 3.42% Castro::estTimeStep() 21 0.02876 0.06487 0.1103 3.16% FabArray::ParallelCopy_finish() 41 0.03317 0.04567 0.09299 2.67% amrex::Copy() 193 0.05818 0.07598 0.08476 2.43% FabArray::setVal() 143 0.05358 0.06663 0.0722 2.07% Castro::reset_internal_energy(Fab) 1008 0.04579 0.04749 0.04856 1.39% Castro::normalize_species() 62 0.04137 0.04205 0.04332 1.24% FabArray::ParallelCopy_nowait() 41 0.0341 0.04008 0.04147 1.19% StateData::FillBoundary(geom) 41 0.02993 0.0317 0.03378 0.97% FillPatchIterator::Initialize 41 0.0265 0.03037 0.03265 0.94% Gravity::interpolate_monopole_grav() 21 0.02746 0.02936 0.03053 0.88% Castro::construct_new_gravity_source() 10 0.02208 0.02487 0.02793 0.80% Castro::computeTemp() 63 0.0183 0.01957 0.0207 0.59% Castro::initialize_do_advance() 10 0.01141 0.0166 0.01786 0.51% Castro::initialize_advance() 10 0.00397 0.01099 0.01478 0.42% FabArray::Saxpy() 20 0.01118 0.01305 0.01426 0.41% VisMF::Write(FabArray) 2 0.008743 0.009296 0.01222 0.35% MultiFab::contains_nan() 20 0.009738 0.0107 0.01211 0.35% FabArray::setDomainBndry() 41 0.006368 0.008925 0.01132 0.32% Castro::construct_old_gravity_source() 10 0.006392 0.01005 0.01078 0.31% Castro::initMFs() 1 0.006209 0.007289 0.009475 0.27% Amr::writePlotFile() 2 0.005957 0.008124 0.008633 0.25% StateData::define() 4 0.005193 0.006062 0.00791 0.23% Castro::construct_new_source() 50 0.00557 0.006359 0.006731 0.19% Castro::enforce_min_density() 62 0.005782 0.006092 0.006489 0.19% main() 1 0.00331 0.004351 0.004916 0.14% Castro::swap_state_time_levels() 10 0.002096 0.004093 0.004423 0.13% Gravity::get_new_grav_vector() 11 0.002778 0.003319 0.003743 0.11% Amr::coarseTimeStep() 10 0.001486 0.002052 0.002986 0.09% Castro::buildMetrics() 1 0.001468 0.001723 0.002253 0.06% Gravity::get_old_grav_vector() 10 0.001524 0.001852 0.002183 0.06% Castro::finalize_do_advance() 10 0.0004772 0.00118 0.001496 0.04% AmrLevel::FillPatch() 41 0.0007398 0.0008801 0.001026 0.03% Amr::InitAmr() 1 0.0003759 0.0004712 0.0006651 0.02% Amr::timeStep() 10 0.0001433 0.0002238 0.0004719 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002776 0.0002978 0.0003686 0.01% DistributionMapping::LeastUsedCPUs() 1 8.717e-06 0.0002337 0.000337 0.01% Castro::clean_state() 62 0.0001365 0.0001576 0.0002205 0.01% Castro::do_advance_ctu() 10 0.0001103 0.0001452 0.0001846 0.01% StateDataPhysBCFunct::() 41 8.743e-05 0.0001125 0.0001845 0.01% FillPatchIterator::FillFromLevel0() 41 9.135e-05 0.0001128 0.0001639 0.00% Castro::do_old_sources() 10 7.012e-05 9.621e-05 0.0001126 0.00% Castro::finalize_advance() 10 7.949e-05 9.506e-05 0.0001072 0.00% FabArray::ParallelCopy() 41 7.256e-05 8.322e-05 0.0001061 0.00% Castro::construct_old_source() 50 5.19e-05 7.411e-05 9.833e-05 0.00% FillPatchSingleLevel 41 6.157e-05 7.044e-05 9.393e-05 0.00% Castro::enforce_consistent_e() 1 7.833e-05 8.47e-05 9.13e-05 0.00% FabArrayBase::getCPC() 41 3.759e-05 5.799e-05 8.879e-05 0.00% Castro::do_new_sources() 10 4.914e-05 6.614e-05 8.612e-05 0.00% Amr::FinalizeInit() 1 3.491e-06 1.399e-05 8.219e-05 0.00% Castro::Castro() 1 5.193e-05 5.903e-05 7.178e-05 0.00% Castro::subcycle_advance_ctu() 10 4.144e-05 5.061e-05 6.474e-05 0.00% Amr::writeSmallPlotFile() 1 3.124e-05 4.705e-05 6.415e-05 0.00% Castro::apply_source_to_state() 20 3.388e-05 4.951e-05 5.879e-05 0.00% Castro::construct_new_gravity() 10 3.162e-05 4.162e-05 5.607e-05 0.00% Castro::advance() 10 4.192e-05 4.772e-05 5.234e-05 0.00% Castro::construct_old_gravity() 10 3.279e-05 3.928e-05 5.07e-05 0.00% Castro::enforce_speed_limit() 62 2.282e-05 2.717e-05 3.536e-05 0.00% Castro::expand_state() 10 2.002e-05 2.315e-05 3.446e-05 0.00% FabArrayBase::CPC::define() 2 2.118e-05 2.612e-05 3.207e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.384e-05 2.079e-05 2.823e-05 0.00% Castro::check_for_nan() 20 2.067e-05 2.409e-05 2.663e-05 0.00% Amr::defBaseLevel() 1 1.65e-05 2.064e-05 2.645e-05 0.00% Castro::post_init() 1 1.46e-05 1.86e-05 2.503e-05 0.00% Castro::post_timestep() 10 1.222e-05 1.593e-05 2.157e-05 0.00% Amr::initSubcycle() 1 9.336e-06 1.336e-05 2.151e-05 0.00% Castro::create_source_corrector() 10 7.384e-06 9.886e-06 1.522e-05 0.00% Gravity::set_mass_offset() 10 8.567e-06 1.093e-05 1.431e-05 0.00% Gravity::swapTimeLevels() 10 8.274e-06 1.066e-05 1.359e-05 0.00% Castro::retry_advance_ctu() 10 6.411e-06 7.521e-06 1.086e-05 0.00% Castro::computeNewDt() 9 7.497e-06 8.31e-06 1.062e-05 0.00% Castro::FluxRegCrseInit 10 6.74e-06 8.065e-06 9.498e-06 0.00% Castro::post_regrid() 1 1.878e-06 3.391e-06 7.449e-06 0.00% Amr::init() 1 1.837e-06 2.878e-06 7.294e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.539e-06 4.589e-06 6.232e-06 0.00% Castro::computeInitialDt() 2 2.749e-06 3.569e-06 5.172e-06 0.00% Amr::InitializeInit() 1 1.721e-06 2.283e-06 4.312e-06 0.00% Castro::FluxRegFineAdd() 10 2.067e-06 2.498e-06 3.135e-06 0.00% Amr::initialInit() 1 1.129e-06 1.647e-06 2.387e-06 0.00% DistributionMapping::Distribute() 1 9.07e-07 1.092e-06 1.342e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.484 3.485 3.485 100.00% Amr::coarseTimeStep() 10 3.291 3.291 3.291 94.41% Amr::timeStep() 10 3.277 3.278 3.279 94.08% Castro::advance() 10 3.262 3.262 3.263 93.62% Castro::subcycle_advance_ctu() 10 3.183 3.188 3.208 92.05% Castro::do_advance_ctu() 10 3.183 3.188 3.208 92.05% Castro::construct_ctu_hydro_source() 10 2.462 2.466 2.469 70.85% Gravity::make_radial_gravity() 21 0.3054 0.3134 0.3261 9.35% AmrLevel::FillPatch() 41 0.1718 0.1878 0.2137 6.13% Gravity::get_new_grav_vector() 11 0.2085 0.2102 0.2123 6.09% Castro::construct_old_gravity() 10 0.1784 0.1843 0.1951 5.60% Gravity::get_old_grav_vector() 10 0.1777 0.1837 0.1945 5.58% FillPatchIterator::Initialize 41 0.1415 0.1572 0.1906 5.47% Castro::construct_new_gravity() 10 0.187 0.188 0.1893 5.43% Amr::init() 1 0.1813 0.1815 0.1816 5.21% Amr::initialInit() 1 0.1689 0.1691 0.1693 4.86% Castro::initialize_do_advance() 10 0.1519 0.1591 0.1679 4.82% check_for_negative_density() 10 0.03861 0.08162 0.1639 4.70% FillPatchIterator::FillFromLevel0() 41 0.1053 0.1179 0.1577 4.52% FillPatchSingleLevel 41 0.1052 0.1178 0.1575 4.52% Amr::InitializeInit() 1 0.06768 0.108 0.143 4.10% Amr::defBaseLevel() 1 0.06768 0.108 0.143 4.10% FabArray::ParallelCopy() 41 0.07436 0.08592 0.1273 3.65% Castro::initData() 1 0.05245 0.09084 0.1229 3.53% Castro::expand_state() 10 0.0977 0.106 0.121 3.47% Castro::clean_state() 62 0.1109 0.1148 0.1181 3.39% Castro::estTimeStep() 21 0.02876 0.06487 0.1103 3.16% Amr::FinalizeInit() 1 0.02596 0.06111 0.1014 2.91% Castro::do_old_sources() 10 0.08834 0.09182 0.09539 2.74% FabArray::ParallelCopy_finish() 41 0.03317 0.04567 0.09299 2.67% amrex::Copy() 193 0.05818 0.07598 0.08476 2.43% Castro::computeInitialDt() 2 0.002107 0.03728 0.0776 2.23% Castro::initialize_advance() 10 0.04993 0.07054 0.07588 2.18% FabArray::setVal() 143 0.05358 0.06663 0.0722 2.07% Castro::do_new_sources() 10 0.06008 0.06428 0.07068 2.03% Castro::computeTemp() 63 0.06437 0.06736 0.06957 2.00% Castro::reset_internal_energy(MultiFab) 63 0.04607 0.04779 0.04888 1.40% Castro::reset_internal_energy(Fab) 1008 0.04579 0.04749 0.04856 1.39% Castro::normalize_species() 62 0.04137 0.04205 0.04332 1.24% FabArray::ParallelCopy_nowait() 41 0.03422 0.04017 0.04154 1.19% Castro::construct_new_source() 50 0.02765 0.03123 0.03456 0.99% StateDataPhysBCFunct::() 41 0.03012 0.03181 0.0339 0.97% StateData::FillBoundary(geom) 41 0.02993 0.0317 0.03378 0.97% Gravity::interpolate_monopole_grav() 21 0.02746 0.02936 0.03053 0.88% Castro::construct_new_gravity_source() 10 0.02208 0.02487 0.02793 0.80% Castro::finalize_do_advance() 10 0.0119 0.01951 0.0239 0.69% Castro::post_init() 1 0.02313 0.02333 0.02353 0.68% Amr::writePlotFile() 2 0.01992 0.02007 0.02025 0.58% Castro::post_timestep() 10 0.0152 0.01572 0.01606 0.46% Castro::apply_source_to_state() 20 0.01124 0.0131 0.01432 0.41% FabArray::Saxpy() 20 0.01118 0.01305 0.01426 0.41% Castro::Castro() 1 0.009724 0.01083 0.01314 0.38% VisMF::Write(FabArray) 2 0.008743 0.009296 0.01222 0.35% Castro::check_for_nan() 20 0.009762 0.01072 0.01214 0.35% MultiFab::contains_nan() 20 0.009738 0.0107 0.01211 0.35% FabArray::setDomainBndry() 41 0.006368 0.008925 0.01132 0.32% Castro::construct_old_source() 50 0.006459 0.01012 0.01085 0.31% Castro::construct_old_gravity_source() 10 0.006392 0.01005 0.01078 0.31% Castro::initMFs() 1 0.006209 0.007289 0.009475 0.27% Castro::computeNewDt() 9 0.009264 0.00927 0.009274 0.27% AmrLevel::AmrLevel(dm) 1 0.005212 0.006083 0.007934 0.23% StateData::define() 4 0.005193 0.006062 0.00791 0.23% Castro::enforce_min_density() 62 0.005782 0.006092 0.006489 0.19% Castro::swap_state_time_levels() 10 0.002096 0.004093 0.004423 0.13% Castro::finalize_advance() 10 0.003073 0.003319 0.003581 0.10% Castro::buildMetrics() 1 0.001588 0.001876 0.00247 0.07% Castro::post_regrid() 1 0.001466 0.001568 0.00162 0.05% Amr::InitAmr() 1 0.0003861 0.0004846 0.0006824 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.396e-05 0.0002394 0.000344 0.01% DistributionMapping::LeastUsedCPUs() 1 8.717e-06 0.0002337 0.000337 0.01% FabArrayBase::getCPC() 41 6.714e-05 8.41e-05 0.0001209 0.00% Castro::enforce_consistent_e() 1 7.833e-05 8.47e-05 9.13e-05 0.00% Amr::writeSmallPlotFile() 1 3.124e-05 4.705e-05 6.415e-05 0.00% Castro::enforce_speed_limit() 62 2.282e-05 2.717e-05 3.536e-05 0.00% FabArrayBase::CPC::define() 2 2.118e-05 2.612e-05 3.207e-05 0.00% Amr::initSubcycle() 1 9.336e-06 1.336e-05 2.151e-05 0.00% Castro::create_source_corrector() 10 7.384e-06 9.886e-06 1.522e-05 0.00% Gravity::set_mass_offset() 10 8.567e-06 1.093e-05 1.431e-05 0.00% Gravity::swapTimeLevels() 10 8.274e-06 1.066e-05 1.359e-05 0.00% Castro::retry_advance_ctu() 10 6.411e-06 7.521e-06 1.086e-05 0.00% Castro::FluxRegCrseInit 10 6.74e-06 8.065e-06 9.498e-06 0.00% Castro::FluxRegFineAdd() 10 2.067e-06 2.498e-06 3.135e-06 0.00% DistributionMapping::Distribute() 1 9.07e-07 1.092e-06 1.342e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 35 B 46 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.01-1-gf1ec8df75c56) finalized