Initializing AMReX (24.01-1-gf1ec8df75c56)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.01-1-gf1ec8df75c56) initialized Starting run at 06:33:13 UTC on 2024-01-05. Successfully read inputs file ... Castro git describe: 24.01-2-g3e624f0de AMReX git describe: 24.01-1-gf1ec8df75 Microphysics git describe: 24.01-5-g3700590c reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013046001 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.363187923 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.345472172 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.331913044 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.33082605 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.332628597 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.368249092 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.317659999 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.310735724 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.311503568 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.311809572 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007664262 seconds Ending run at 06:33:17 UTC on 2024-01-05. Run time = 3.527815224 Run time without initialization = 3.337554703 Average number of zones advanced per microsecond: 0.785 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.526 ... 3.527 ... 3.528 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2931 2.3648 2.3976 67.96% Gravity::make_radial_gravity() 21 0.2994 0.3064 0.3139 8.90% check_for_negative_density() 10 0.02771 0.0638 0.1412 4.00% Castro::initData() 1 0.04739 0.08568 0.1282 3.63% Castro::estTimeStep() 21 0.02346 0.06991 0.1117 3.17% amrex::Copy() 193 0.0766 0.08241 0.09764 2.77% FabArray::setVal() 143 0.07036 0.07601 0.08259 2.34% FabArray::ParallelCopy_finish() 41 0.0408 0.05653 0.06615 1.88% Castro::reset_internal_energy(Fab) 1008 0.04679 0.04876 0.05322 1.51% FabArray::ParallelCopy_nowait() 41 0.04062 0.04296 0.04483 1.27% Castro::normalize_species() 62 0.04114 0.04186 0.04423 1.25% StateData::FillBoundary(geom) 41 0.03032 0.03357 0.03767 1.07% FillPatchIterator::Initialize 41 0.02826 0.03461 0.03752 1.06% Gravity::interpolate_monopole_grav() 21 0.02673 0.02907 0.03115 0.88% Castro::construct_new_gravity_source() 10 0.02384 0.02504 0.02694 0.76% Castro::computeTemp() 63 0.01958 0.02029 0.02301 0.65% Castro::initialize_do_advance() 10 0.01471 0.01798 0.01892 0.54% Castro::initialize_advance() 10 0.01056 0.01322 0.0162 0.46% MultiFab::contains_nan() 20 0.01097 0.01294 0.01528 0.43% FabArray::Saxpy() 20 0.01222 0.01362 0.01477 0.42% VisMF::Write(FabArray) 2 0.008899 0.0094 0.01171 0.33% FabArray::setDomainBndry() 41 0.00712 0.01026 0.01141 0.32% Castro::construct_old_gravity_source() 10 0.009137 0.01017 0.01077 0.31% Amr::writePlotFile() 2 0.006276 0.008628 0.009294 0.26% Castro::initMFs() 1 0.006287 0.006615 0.008699 0.25% Castro::enforce_min_density() 62 0.007362 0.007505 0.007666 0.22% Castro::construct_new_source() 50 0.006353 0.006673 0.007046 0.20% StateData::define() 4 0.005189 0.005307 0.005934 0.17% main() 1 0.003555 0.004437 0.005216 0.15% Castro::swap_state_time_levels() 10 0.003351 0.004515 0.005016 0.14% Gravity::get_new_grav_vector() 11 0.002994 0.003671 0.003965 0.11% Gravity::get_old_grav_vector() 10 0.001581 0.002215 0.003754 0.11% Amr::coarseTimeStep() 10 0.000883 0.001514 0.002034 0.06% Castro::buildMetrics() 1 0.001465 0.001513 0.001711 0.05% Castro::finalize_do_advance() 10 0.001076 0.001315 0.001544 0.04% AmrLevel::FillPatch() 41 0.0008136 0.0009848 0.001134 0.03% Amr::InitAmr() 1 0.0003477 0.0003774 0.000494 0.01% Amr::timeStep() 10 0.0001583 0.0002138 0.0004225 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002833 0.0003035 0.0003463 0.01% Castro::do_advance_ctu() 10 0.0001286 0.0001473 0.0001877 0.01% StateDataPhysBCFunct::() 41 9.179e-05 0.0001107 0.0001827 0.01% Castro::clean_state() 62 0.0001464 0.0001606 0.0001774 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001042 0.0001244 0.0001688 0.00% DistributionMapping::LeastUsedCPUs() 1 6.571e-06 0.0001243 0.0001485 0.00% FabArray::ParallelCopy() 41 7.616e-05 9.256e-05 0.00012 0.00% Castro::finalize_advance() 10 7.897e-05 0.0001006 0.000115 0.00% Castro::do_old_sources() 10 7.907e-05 9.496e-05 0.0001127 0.00% Castro::Castro() 1 5.822e-05 7.987e-05 0.0001045 0.00% Amr::writeSmallPlotFile() 1 3.169e-05 5.317e-05 9.887e-05 0.00% Castro::construct_old_source() 50 6.217e-05 7.853e-05 9.56e-05 0.00% Amr::FinalizeInit() 1 4.139e-06 1.573e-05 9.29e-05 0.00% Castro::enforce_consistent_e() 1 7.869e-05 8.561e-05 9.208e-05 0.00% FillPatchSingleLevel 41 6.039e-05 7.65e-05 9.19e-05 0.00% Castro::construct_old_gravity() 10 3.363e-05 4.737e-05 8.554e-05 0.00% Castro::do_new_sources() 10 5.536e-05 7.079e-05 7.79e-05 0.00% FabArrayBase::getCPC() 41 4.035e-05 5.681e-05 7.106e-05 0.00% Castro::subcycle_advance_ctu() 10 4.285e-05 5.337e-05 6.739e-05 0.00% Castro::apply_source_to_state() 20 3.652e-05 4.934e-05 5.819e-05 0.00% Castro::advance() 10 4.423e-05 5.169e-05 5.752e-05 0.00% Castro::construct_new_gravity() 10 2.856e-05 3.591e-05 4.999e-05 0.00% Castro::enforce_speed_limit() 62 2.46e-05 2.987e-05 3.44e-05 0.00% FabArrayBase::CPC::define() 2 2.396e-05 2.822e-05 3.365e-05 0.00% Castro::expand_state() 10 2.001e-05 2.706e-05 3.192e-05 0.00% Amr::defBaseLevel() 1 1.573e-05 2.087e-05 3.054e-05 0.00% Castro::check_for_nan() 20 2.057e-05 2.355e-05 2.655e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.402e-05 1.929e-05 2.421e-05 0.00% Castro::post_timestep() 10 1.208e-05 1.443e-05 1.863e-05 0.00% Castro::post_init() 1 1.465e-05 1.628e-05 1.829e-05 0.00% Gravity::swapTimeLevels() 10 8.798e-06 1.106e-05 1.433e-05 0.00% Gravity::set_mass_offset() 10 8.074e-06 1.127e-05 1.355e-05 0.00% Amr::initSubcycle() 1 9.82e-06 1.03e-05 1.146e-05 0.00% Castro::create_source_corrector() 10 7.247e-06 8.969e-06 1.082e-05 0.00% Castro::FluxRegCrseInit 10 6.425e-06 7.39e-06 1.028e-05 0.00% Castro::computeNewDt() 9 7.242e-06 8.226e-06 9.65e-06 0.00% Amr::initialInit() 1 1.426e-06 2.614e-06 8.232e-06 0.00% Castro::retry_advance_ctu() 10 5.934e-06 7.086e-06 7.814e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.554e-06 5.1e-06 6.115e-06 0.00% Amr::InitializeInit() 1 1.712e-06 2.2e-06 4.471e-06 0.00% Castro::post_regrid() 1 1.72e-06 3.048e-06 4.312e-06 0.00% Castro::computeInitialDt() 2 2.977e-06 3.359e-06 3.911e-06 0.00% Amr::init() 1 1.963e-06 2.358e-06 3.188e-06 0.00% Castro::FluxRegFineAdd() 10 1.982e-06 2.474e-06 3.057e-06 0.00% DistributionMapping::Distribute() 1 8.57e-07 1e-06 1.111e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.526 3.527 3.528 100.00% Amr::coarseTimeStep() 10 3.325 3.325 3.325 94.24% Amr::timeStep() 10 3.312 3.313 3.314 93.92% Castro::advance() 10 3.296 3.297 3.297 93.46% Castro::subcycle_advance_ctu() 10 3.212 3.216 3.218 91.22% Castro::do_advance_ctu() 10 3.212 3.216 3.218 91.21% Castro::construct_ctu_hydro_source() 10 2.444 2.45 2.456 69.61% Gravity::make_radial_gravity() 21 0.3154 0.3228 0.3305 9.37% AmrLevel::FillPatch() 41 0.1956 0.2103 0.2288 6.49% Castro::construct_old_gravity() 10 0.1982 0.2031 0.2103 5.96% Gravity::get_new_grav_vector() 11 0.2075 0.2091 0.2102 5.96% Gravity::get_old_grav_vector() 10 0.1975 0.2023 0.2097 5.94% FillPatchIterator::Initialize 41 0.162 0.1784 0.1964 5.57% Amr::init() 1 0.1896 0.1897 0.1898 5.38% Castro::construct_new_gravity() 10 0.1851 0.1862 0.1869 5.30% Amr::initialInit() 1 0.1763 0.1765 0.1766 5.01% Castro::initialize_do_advance() 10 0.1671 0.172 0.1761 4.99% Amr::InitializeInit() 1 0.06744 0.1061 0.1498 4.25% Amr::defBaseLevel() 1 0.06744 0.1061 0.1498 4.25% FillPatchIterator::FillFromLevel0() 41 0.1161 0.1335 0.1476 4.18% FillPatchSingleLevel 41 0.116 0.1334 0.1475 4.18% check_for_negative_density() 10 0.02771 0.0638 0.1412 4.00% Castro::initData() 1 0.05132 0.08967 0.1318 3.74% Castro::clean_state() 62 0.1151 0.118 0.1253 3.55% Castro::expand_state() 10 0.1043 0.1129 0.12 3.40% Castro::estTimeStep() 21 0.02346 0.06991 0.1117 3.17% Castro::do_old_sources() 10 0.09976 0.1045 0.1112 3.15% FabArray::ParallelCopy() 41 0.08373 0.09966 0.1102 3.12% Amr::FinalizeInit() 1 0.02673 0.07041 0.1091 3.09% amrex::Copy() 193 0.0766 0.08241 0.09764 2.77% Castro::computeInitialDt() 2 0.00217 0.04595 0.0846 2.40% FabArray::setVal() 143 0.07036 0.07601 0.08259 2.34% Castro::initialize_advance() 10 0.07528 0.07755 0.08105 2.30% Castro::computeTemp() 63 0.06668 0.06936 0.07452 2.11% Castro::do_new_sources() 10 0.0626 0.06583 0.06932 1.96% FabArray::ParallelCopy_finish() 41 0.0408 0.05653 0.06615 1.88% Castro::reset_internal_energy(MultiFab) 63 0.04707 0.04907 0.05351 1.52% Castro::reset_internal_energy(Fab) 1008 0.04679 0.04876 0.05322 1.51% FabArray::ParallelCopy_nowait() 41 0.04069 0.04304 0.04491 1.27% Castro::normalize_species() 62 0.04114 0.04186 0.04423 1.25% StateDataPhysBCFunct::() 41 0.0305 0.03368 0.03777 1.07% StateData::FillBoundary(geom) 41 0.03032 0.03357 0.03767 1.07% Castro::construct_new_source() 50 0.03029 0.03172 0.03379 0.96% Gravity::interpolate_monopole_grav() 21 0.02673 0.02907 0.03115 0.88% Castro::construct_new_gravity_source() 10 0.02384 0.02504 0.02694 0.76% Castro::post_init() 1 0.02375 0.024 0.02417 0.69% Amr::writePlotFile() 2 0.02085 0.02099 0.02124 0.60% Castro::finalize_do_advance() 10 0.01215 0.01611 0.01937 0.55% Castro::post_timestep() 10 0.01574 0.01594 0.0162 0.46% Castro::check_for_nan() 20 0.011 0.01296 0.01531 0.43% MultiFab::contains_nan() 20 0.01097 0.01294 0.01528 0.43% Castro::apply_source_to_state() 20 0.01227 0.01367 0.01483 0.42% FabArray::Saxpy() 20 0.01222 0.01362 0.01477 0.42% Castro::Castro() 1 0.01071 0.01092 0.01192 0.34% VisMF::Write(FabArray) 2 0.008899 0.0094 0.01171 0.33% FabArray::setDomainBndry() 41 0.00712 0.01026 0.01141 0.32% Castro::construct_old_source() 50 0.009213 0.01025 0.01087 0.31% Castro::construct_old_gravity_source() 10 0.009137 0.01017 0.01077 0.31% Castro::computeNewDt() 9 0.00917 0.009178 0.009187 0.26% Castro::initMFs() 1 0.006287 0.006615 0.008699 0.25% Castro::enforce_min_density() 62 0.007362 0.007505 0.007666 0.22% AmrLevel::AmrLevel(dm) 1 0.005208 0.005326 0.005957 0.17% StateData::define() 4 0.005189 0.005307 0.005934 0.17% Castro::swap_state_time_levels() 10 0.003351 0.004515 0.005016 0.14% Castro::finalize_advance() 10 0.003134 0.003382 0.003596 0.10% Castro::buildMetrics() 1 0.001584 0.001644 0.001866 0.05% Castro::post_regrid() 1 0.00154 0.001582 0.001628 0.05% Amr::InitAmr() 1 0.000358 0.0003877 0.0005039 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.107e-05 0.0001304 0.0001553 0.00% DistributionMapping::LeastUsedCPUs() 1 6.571e-06 0.0001243 0.0001485 0.00% Amr::writeSmallPlotFile() 1 3.169e-05 5.317e-05 9.887e-05 0.00% FabArrayBase::getCPC() 41 7.4e-05 8.503e-05 9.81e-05 0.00% Castro::enforce_consistent_e() 1 7.869e-05 8.561e-05 9.208e-05 0.00% Castro::enforce_speed_limit() 62 2.46e-05 2.987e-05 3.44e-05 0.00% FabArrayBase::CPC::define() 2 2.396e-05 2.822e-05 3.365e-05 0.00% Gravity::swapTimeLevels() 10 8.798e-06 1.106e-05 1.433e-05 0.00% Gravity::set_mass_offset() 10 8.074e-06 1.127e-05 1.355e-05 0.00% Amr::initSubcycle() 1 9.82e-06 1.03e-05 1.146e-05 0.00% Castro::create_source_corrector() 10 7.247e-06 8.969e-06 1.082e-05 0.00% Castro::FluxRegCrseInit 10 6.425e-06 7.39e-06 1.028e-05 0.00% Castro::retry_advance_ctu() 10 5.934e-06 7.086e-06 7.814e-06 0.00% Castro::FluxRegFineAdd() 10 1.982e-06 2.474e-06 3.057e-06 0.00% DistributionMapping::Distribute() 1 8.57e-07 1e-06 1.111e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 26 B 29 B 35 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.01-1-gf1ec8df75c56) finalized