Initializing AMReX (24.01-1-gf1ec8df75c56)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.01-1-gf1ec8df75c56) initialized Starting run at 13:54:37 UTC on 2024-01-06. Successfully read inputs file ... Castro git describe: 24.01-5-g3b345f298 AMReX git describe: 24.01-1-gf1ec8df75 Microphysics git describe: 24.01-8-g518b421f reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013758301 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.369539071 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.346780782 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.327078762 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.32632822 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.327208779 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.361890901 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.313379909 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.310227724 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.309560002 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.309971715 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007566261 seconds Ending run at 13:54:40 UTC on 2024-01-06. Run time = 3.525379775 Run time without initialization = 3.314994522 Average number of zones advanced per microsecond: 0.791 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.524 ... 3.525 ... 3.525 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2774 2.3631 2.3998 68.07% Gravity::make_radial_gravity() 21 0.294 0.3059 0.322 9.13% check_for_negative_density() 10 0.03702 0.07714 0.1639 4.65% Castro::initData() 1 0.04873 0.0904 0.144 4.08% Castro::estTimeStep() 21 0.02938 0.083 0.1289 3.66% FabArray::ParallelCopy_finish() 41 0.03594 0.05506 0.1056 3.00% amrex::Copy() 193 0.06158 0.07846 0.09317 2.64% FabArray::setVal() 143 0.05402 0.06848 0.07621 2.16% Castro::reset_internal_energy(Fab) 1008 0.04601 0.04757 0.04949 1.40% FabArray::ParallelCopy_nowait() 41 0.03407 0.04139 0.04533 1.29% Castro::normalize_species() 62 0.04104 0.04207 0.04311 1.22% StateData::FillBoundary(geom) 41 0.02856 0.0317 0.03444 0.98% FillPatchIterator::Initialize 41 0.02722 0.03145 0.03406 0.97% Gravity::interpolate_monopole_grav() 21 0.02785 0.02919 0.02998 0.85% Castro::construct_new_gravity_source() 10 0.0218 0.02423 0.02612 0.74% Castro::computeTemp() 63 0.01862 0.01968 0.02063 0.59% Castro::initialize_do_advance() 10 0.01186 0.01623 0.01782 0.51% FabArray::setDomainBndry() 41 0.007131 0.0102 0.01493 0.42% MultiFab::contains_nan() 20 0.009465 0.01082 0.01487 0.42% Castro::initialize_advance() 10 0.003865 0.01087 0.01448 0.41% FabArray::Saxpy() 20 0.01054 0.01261 0.01371 0.39% VisMF::Write(FabArray) 2 0.008783 0.009408 0.01258 0.36% Amr::writePlotFile() 2 0.006764 0.00951 0.01015 0.29% Castro::construct_old_gravity_source() 10 0.006422 0.009369 0.009995 0.28% Castro::initMFs() 1 0.006354 0.006806 0.007996 0.23% Castro::construct_new_source() 50 0.005564 0.006412 0.006862 0.19% Castro::enforce_min_density() 62 0.005854 0.006076 0.006376 0.18% StateData::define() 4 0.00527 0.005511 0.006015 0.17% Castro::swap_state_time_levels() 10 0.002533 0.004194 0.004891 0.14% main() 1 0.003535 0.004192 0.00479 0.14% Gravity::get_new_grav_vector() 11 0.0028 0.003374 0.003937 0.11% Amr::coarseTimeStep() 10 0.001188 0.001766 0.002307 0.07% Gravity::get_old_grav_vector() 10 0.00142 0.00184 0.0022 0.06% Castro::buildMetrics() 1 0.00151 0.001579 0.001753 0.05% Castro::finalize_do_advance() 10 0.0005383 0.001272 0.001569 0.04% AmrLevel::FillPatch() 41 0.0006973 0.0008699 0.001013 0.03% Amr::InitAmr() 1 0.0003462 0.0004349 0.0007773 0.02% DistributionMapping::LeastUsedCPUs() 1 1.269e-05 0.0004086 0.0005062 0.01% Amr::timeStep() 10 0.0001461 0.0002071 0.0003423 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002793 0.0002964 0.000331 0.01% Castro::clean_state() 62 0.0001361 0.000163 0.0002099 0.01% Castro::do_advance_ctu() 10 0.0001115 0.000148 0.0001987 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001046 0.0001249 0.0001598 0.00% StateDataPhysBCFunct::() 41 8.431e-05 0.0001182 0.0001578 0.00% Castro::Castro() 1 5.449e-05 7.358e-05 0.0001252 0.00% Castro::finalize_advance() 10 7.149e-05 9.093e-05 0.0001178 0.00% Castro::do_old_sources() 10 6.929e-05 9.438e-05 0.000114 0.00% Castro::enforce_consistent_e() 1 8.052e-05 8.675e-05 0.0001019 0.00% FabArray::ParallelCopy() 41 7.352e-05 8.819e-05 9.696e-05 0.00% Castro::construct_old_source() 50 5.686e-05 7.316e-05 8.669e-05 0.00% FillPatchSingleLevel 41 6.706e-05 7.174e-05 8.132e-05 0.00% Amr::FinalizeInit() 1 4.001e-06 1.402e-05 7.851e-05 0.00% Castro::do_new_sources() 10 4.913e-05 6.793e-05 7.449e-05 0.00% Amr::writeSmallPlotFile() 1 3.054e-05 4.903e-05 6.743e-05 0.00% FabArrayBase::getCPC() 41 4.258e-05 5.184e-05 6.714e-05 0.00% Castro::subcycle_advance_ctu() 10 3.959e-05 5.188e-05 6.386e-05 0.00% Castro::construct_old_gravity() 10 3.31e-05 4.263e-05 5.512e-05 0.00% Castro::advance() 10 4.31e-05 4.868e-05 5.402e-05 0.00% Castro::apply_source_to_state() 20 3.566e-05 4.6e-05 5.257e-05 0.00% Castro::construct_new_gravity() 10 3.038e-05 3.853e-05 4.914e-05 0.00% Castro::enforce_speed_limit() 62 2.774e-05 3.094e-05 3.754e-05 0.00% Amr::initSubcycle() 1 9.428e-06 1.535e-05 3.562e-05 0.00% FabArrayBase::CPC::define() 2 2.09e-05 2.626e-05 3.118e-05 0.00% Castro::expand_state() 10 2.389e-05 2.754e-05 3.094e-05 0.00% Amr::defBaseLevel() 1 1.738e-05 2.576e-05 3.018e-05 0.00% Castro::post_timestep() 10 1.17e-05 1.663e-05 2.632e-05 0.00% Castro::check_for_nan() 20 2.06e-05 2.283e-05 2.523e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.438e-05 1.739e-05 2.398e-05 0.00% Castro::post_init() 1 1.473e-05 1.64e-05 2.028e-05 0.00% Gravity::set_mass_offset() 10 8.109e-06 1.137e-05 1.355e-05 0.00% Gravity::swapTimeLevels() 10 8.019e-06 1.032e-05 1.201e-05 0.00% Castro::create_source_corrector() 10 7.918e-06 9.48e-06 1.163e-05 0.00% Castro::post_regrid() 1 2.014e-06 4.204e-06 1.05e-05 0.00% Castro::computeNewDt() 9 7.147e-06 8.316e-06 9.874e-06 0.00% Castro::FluxRegCrseInit 10 6.469e-06 8.026e-06 8.975e-06 0.00% Castro::retry_advance_ctu() 10 6.849e-06 7.351e-06 8.856e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.92e-06 5.082e-06 7.009e-06 0.00% Castro::computeInitialDt() 2 3.388e-06 4.34e-06 6.407e-06 0.00% Amr::InitializeInit() 1 1.75e-06 2.566e-06 4.898e-06 0.00% Amr::init() 1 1.842e-06 2.281e-06 3.32e-06 0.00% Castro::FluxRegFineAdd() 10 2.001e-06 2.428e-06 3.091e-06 0.00% DistributionMapping::Distribute() 1 8.88e-07 1.27e-06 2.102e-06 0.00% Amr::initialInit() 1 1.481e-06 1.761e-06 2.04e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.524 3.525 3.525 100.00% Amr::coarseTimeStep() 10 3.303 3.303 3.303 93.68% Amr::timeStep() 10 3.29 3.29 3.291 93.35% Castro::advance() 10 3.274 3.275 3.275 92.89% Castro::subcycle_advance_ctu() 10 3.196 3.201 3.22 91.35% Castro::do_advance_ctu() 10 3.196 3.201 3.22 91.34% Castro::construct_ctu_hydro_source() 10 2.458 2.461 2.465 69.92% Gravity::make_radial_gravity() 21 0.3105 0.3215 0.3343 9.48% AmrLevel::FillPatch() 41 0.1816 0.2022 0.2268 6.43% Gravity::get_new_grav_vector() 11 0.2073 0.2093 0.211 5.98% Amr::init() 1 0.2094 0.2098 0.2099 5.95% Castro::construct_old_gravity() 10 0.1864 0.1951 0.2076 5.89% Gravity::get_old_grav_vector() 10 0.1854 0.1943 0.207 5.87% FillPatchIterator::Initialize 41 0.1486 0.1703 0.2041 5.79% Amr::initialInit() 1 0.1956 0.1958 0.1962 5.56% Castro::construct_new_gravity() 10 0.182 0.1838 0.185 5.25% Castro::initialize_do_advance() 10 0.1654 0.1699 0.1774 5.03% FillPatchIterator::FillFromLevel0() 41 0.1136 0.1286 0.1688 4.79% FillPatchSingleLevel 41 0.1135 0.1285 0.1687 4.78% Amr::InitializeInit() 1 0.0691 0.1112 0.1662 4.72% Amr::defBaseLevel() 1 0.06909 0.1112 0.1662 4.72% check_for_negative_density() 10 0.03702 0.07714 0.1639 4.65% Castro::initData() 1 0.05284 0.09439 0.1481 4.20% FabArray::ParallelCopy() 41 0.08144 0.09662 0.1399 3.97% Castro::expand_state() 10 0.1091 0.1166 0.1296 3.68% Castro::estTimeStep() 21 0.02938 0.083 0.1289 3.66% Amr::FinalizeInit() 1 0.02993 0.08464 0.1267 3.59% Castro::clean_state() 62 0.1112 0.115 0.118 3.35% FabArray::ParallelCopy_finish() 41 0.03594 0.05506 0.1056 3.00% Castro::computeInitialDt() 2 0.002508 0.0576 0.09964 2.83% Castro::do_old_sources() 10 0.0894 0.0947 0.09933 2.82% amrex::Copy() 193 0.06158 0.07846 0.09317 2.64% FabArray::setVal() 143 0.05402 0.06848 0.07621 2.16% Castro::initialize_advance() 10 0.05013 0.07027 0.07502 2.13% Castro::computeTemp() 63 0.06491 0.06755 0.07041 2.00% Castro::do_new_sources() 10 0.05965 0.06335 0.06851 1.94% Castro::reset_internal_energy(MultiFab) 63 0.04629 0.04787 0.04978 1.41% Castro::reset_internal_energy(Fab) 1008 0.04601 0.04757 0.04949 1.40% FabArray::ParallelCopy_nowait() 41 0.03417 0.04147 0.04541 1.29% Castro::normalize_species() 62 0.04104 0.04207 0.04311 1.22% StateDataPhysBCFunct::() 41 0.02872 0.03182 0.03456 0.98% StateData::FillBoundary(geom) 41 0.02856 0.0317 0.03444 0.98% Castro::construct_new_source() 50 0.02736 0.03064 0.03289 0.93% Gravity::interpolate_monopole_grav() 21 0.02785 0.02919 0.02998 0.85% Castro::post_init() 1 0.02507 0.02649 0.02684 0.76% Castro::construct_new_gravity_source() 10 0.0218 0.02423 0.02612 0.74% Amr::writePlotFile() 2 0.02126 0.02163 0.02184 0.62% Castro::finalize_do_advance() 10 0.01271 0.01749 0.02088 0.59% Castro::post_timestep() 10 0.01514 0.01562 0.01622 0.46% FabArray::setDomainBndry() 41 0.007131 0.0102 0.01493 0.42% Castro::check_for_nan() 20 0.009489 0.01085 0.01489 0.42% MultiFab::contains_nan() 20 0.009465 0.01082 0.01487 0.42% Castro::apply_source_to_state() 20 0.01059 0.01266 0.01376 0.39% FabArray::Saxpy() 20 0.01054 0.01261 0.01371 0.39% VisMF::Write(FabArray) 2 0.008783 0.009408 0.01258 0.36% Castro::Castro() 1 0.01039 0.01081 0.01168 0.33% Castro::construct_old_source() 50 0.006489 0.009442 0.01008 0.29% Castro::construct_old_gravity_source() 10 0.006422 0.009369 0.009995 0.28% Castro::computeNewDt() 9 0.009179 0.009191 0.009201 0.26% Castro::initMFs() 1 0.006354 0.006806 0.007996 0.23% Castro::enforce_min_density() 62 0.005854 0.006076 0.006376 0.18% AmrLevel::AmrLevel(dm) 1 0.005285 0.005529 0.006034 0.17% StateData::define() 4 0.00527 0.005511 0.006015 0.17% Castro::swap_state_time_levels() 10 0.002533 0.004194 0.004891 0.14% Castro::finalize_advance() 10 0.003229 0.003364 0.003537 0.10% Castro::post_regrid() 1 0.001487 0.001821 0.003223 0.09% Castro::buildMetrics() 1 0.001629 0.001713 0.00191 0.05% Amr::InitAmr() 1 0.0003563 0.0004503 0.0008129 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 2.063e-05 0.0004149 0.0005126 0.01% DistributionMapping::LeastUsedCPUs() 1 1.269e-05 0.0004086 0.0005062 0.01% Castro::enforce_consistent_e() 1 8.052e-05 8.675e-05 0.0001019 0.00% FabArrayBase::getCPC() 41 6.392e-05 7.81e-05 9.832e-05 0.00% Amr::writeSmallPlotFile() 1 3.054e-05 4.903e-05 6.743e-05 0.00% Castro::enforce_speed_limit() 62 2.774e-05 3.094e-05 3.754e-05 0.00% Amr::initSubcycle() 1 9.428e-06 1.535e-05 3.562e-05 0.00% FabArrayBase::CPC::define() 2 2.09e-05 2.626e-05 3.118e-05 0.00% Gravity::set_mass_offset() 10 8.109e-06 1.137e-05 1.355e-05 0.00% Gravity::swapTimeLevels() 10 8.019e-06 1.032e-05 1.201e-05 0.00% Castro::create_source_corrector() 10 7.918e-06 9.48e-06 1.163e-05 0.00% Castro::FluxRegCrseInit 10 6.469e-06 8.026e-06 8.975e-06 0.00% Castro::retry_advance_ctu() 10 6.849e-06 7.351e-06 8.856e-06 0.00% Castro::FluxRegFineAdd() 10 2.001e-06 2.428e-06 3.091e-06 0.00% DistributionMapping::Distribute() 1 8.88e-07 1.27e-06 2.102e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 27 B 31 B 37 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.01-1-gf1ec8df75c56) finalized