Initializing AMReX (24.01-1-gf1ec8df75c56)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.01-1-gf1ec8df75c56) initialized Starting run at 15:08:05 UTC on 2024-01-06. Successfully read inputs file ... Castro git describe: 24.01-5-g3b345f298 AMReX git describe: 24.01-1-gf1ec8df75 Microphysics git describe: 24.01-8-g518b421f radiation initialized, nGroups = 1 reading extern runtime parameters ... 1 Species: X Radiation::nGroups = 1 Successfully read inputs file ... Creating Radiation object processors = 8 do_sync = 1 c = 2.99792458e+10 sigma = 5.670373e-05 reltol = 1e-06 abstol = 0 maxiter = 50 relInTol = 0.0001 absInTol = 0 maxInIter = 30 delta_e_rat_dt_tol = 100 delta_T_rat_dt_tol = 100 limiter = 0 closure = 3 update_limiter = 1000 update_planck = 1000 update_rosseland = 1000 delta_temp = 0.0001 underfac = 1 do_multigroup = 0 accelerate = 1 verbose = 2 SolverType = 5: SGFLDSolver rad_hydro_combined = 1 comoving = 1 dimension 0 rad boundary conditions = 102, 102 dimension 1 rad boundary conditions = 102, 102 dimension 2 rad boundary conditions = 102, 102 Regridding radiation object at level 0... done hmabec.bho = 0 hmabec.use_subgrids = 0 hmabec.verbose = 1 hmabec.verbose_threshold = 0 grid_places() time: 0.023748441 new finest: 1 Regridding radiation object at level 1... done Now regridding at level lbase = 0 grid_places() time: 0.015085353 new finest: 1 Regridding radiation object at level 1... done STEP = 0 TIME = 0 : REGRID with lbase = 0 Level 1 8 grids 4096 cells 0.0244140625 % of domain smallest grid: 8 x 8 x 8 biggest grid: 8 x 8 x 8 Integrated Fluid Mass is 0.015394863670274892831 Integrated Fluid Energy is 29997674.940313063562 Integrated Radiant Energy is 0 Flux Register Energy is 0 Integrated Total Energy is 29997674.940313063562 INITIAL GRIDS Level 0 512 grids 2097152 cells 100 % of domain smallest grid: 16 x 16 x 16 biggest grid: 16 x 16 x 16 Level 1 8 grids 4096 cells 0.0244140625 % of domain smallest grid: 8 x 8 x 8 biggest grid: 8 x 8 x 8 PLOTFILE: file = rad-thermalwave-3d_plt00000 Write plotfile time = 1.243740085 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 1e-15 Radiation flux initialization at level 0... done Radiation implicit update, level 0... hmabec.kdim = 5 hmabec.struct_flag = HYPRE_PFMG hmabec.pfmg_relax_type = 1 hmabec.pfmg_pre_relax = 1 hmabec.pfmg_post_relax = 1 Radiation Update: Iteration 1, Relative = 1302911.3751869073603 Absolute = 30717.669438446406275 Radiation Update: Iteration 2, Relative = 0.99981662868865028848 Absolute = 23038.180019796520355 Radiation Update: Iteration 3, Relative = 2.5049676886893679217 Absolute = 17278.601887119169987 Radiation Update: Iteration 4, Relative = 0.24999769808886593281 Absolute = 12958.890609044668963 Radiation Update: Iteration 5, Relative = 0.24999136871489602285 Absolute = 9718.9517189824473462 Radiation Update: Iteration 6, Relative = 0.24997033128851878225 Absolute = 7288.6842628490230709 Radiation Update: Iteration 7, Relative = 0.24990070262122299205 Absolute = 5465.2062970578444947 Radiation Update: Iteration 8, Relative = 0.24967419762748074841 Absolute = 4095.7314557644131128 Radiation Update: Iteration 9, Relative = 0.24894351000289596798 Absolute = 3064.1399230131682998 Radiation Update: Iteration 10, Relative = 0.24661313036933193987 Absolute = 2279.7991164082268369 Radiation Update: Iteration 11, Relative = 0.23933586571505907625 Absolute = 1666.8872353665337869 Radiation Update: Iteration 12, Relative = 0.21783418752900138293 Absolute = 1154.030872133507728 Radiation Update: Iteration 13, Relative = 0.16356883430105931265 Absolute = 677.78316110712194131 Radiation Update: Iteration 14, Relative = 0.093401072746009616843 Absolute = 253.16119395304576756 Radiation Update: Iteration 15, Relative = 0.037594275648102040699 Absolute = 32.94838537221403385 Radiation Update: Iteration 16, Relative = 0.0134962202343157818 Absolute = 0.51586695283367589582 Radiation Update: Iteration 17, Relative = 0.0035380388796303861854 Absolute = 0.00012547822871056268923 Radiation Update: Iteration 18, Relative = 0.00067881569843938286551 Absolute = 6.8453740553753306131e-07 Radiation Update: Iteration 19, Relative = 2.8606673921437502915e-16 Absolute = 9.0949470177292823792e-13 done [Level 0 step 1] Advanced 2097152 cells [Level 1 step 1] ADVANCE at time 0 with dt = 5e-16 Radiation flux initialization at level 1... done Radiation implicit update, level 1... Radiation Update: Iteration 1, Relative = 1740874.668854993768 Absolute = 58670.981734533677809 Radiation Update: Iteration 2, Relative = 1.3693198093305067875 Absolute = 44003.211727789370343 Radiation Update: Iteration 3, Relative = 8.4196406826180574257 Absolute = 33002.391901588940527 Radiation Update: Iteration 4, Relative = 0.37636607392454179966 Absolute = 24751.700721644883743 Radiation Update: Iteration 5, Relative = 0.28749652133088227091 Absolute = 18563.700313886394724 Radiation Update: Iteration 6, Relative = 0.24999531548820527749 Absolute = 13922.620733922798536 Radiation Update: Iteration 7, Relative = 0.24998545120069648462 Absolute = 10441.618750627872942 Radiation Update: Iteration 8, Relative = 0.2499517781403827188 Absolute = 7830.3110903618398879 Radiation Update: Iteration 9, Relative = 0.24984312765789992716 Absolute = 5870.5579521638974256 Radiation Update: Iteration 10, Relative = 0.2494946002186735623 Absolute = 4397.696101984307461 Radiation Update: Iteration 11, Relative = 0.24838333322188957397 Absolute = 3285.7940291271042952 Radiation Update: Iteration 12, Relative = 0.24487940595321369686 Absolute = 2434.8185895684700881 Radiation Update: Iteration 13, Relative = 0.23412909072132412347 Absolute = 1757.867054671396545 Radiation Update: Iteration 14, Relative = 0.2036345008265787182 Absolute = 1170.9479946106948773 Radiation Update: Iteration 15, Relative = 0.13441402972060562115 Absolute = 615.5215818686356215 Radiation Update: Iteration 16, Relative = 0.044161140480810649744 Absolute = 174.17160435714549749 Radiation Update: Iteration 17, Relative = 0.014457617881609293245 Absolute = 12.704636963490884227 Radiation Update: Iteration 18, Relative = 0.0033113599243763608762 Absolute = 0.064133107453471893677 Radiation Update: Iteration 19, Relative = 0.0013411946267766876057 Absolute = 2.8354589565182664046e-06 Radiation Update: Iteration 20, Relative = 3.796097931293171471e-16 Absolute = 1.3642420526593923569e-12 done [Level 1 step 1] Advanced 4096 cells [Level 1 step 2] ADVANCE at time 5e-16 with dt = 5e-16 Radiation implicit update, level 1... Radiation Update: Iteration 1, Relative = 1.1293800200035124526 Absolute = 58.81465512416070851 Radiation Update: Iteration 2, Relative = 0.24676661788898782146 Absolute = 1.4191275508756007184 Radiation Update: Iteration 3, Relative = 0.038876324482146826234 Absolute = 0.00081055567125076777302 Radiation Update: Iteration 4, Relative = 0.0026439702170363123604 Absolute = 5.6305582054605451958e-06 Radiation Update: Iteration 5, Relative = 3.857599482584307343e-16 Absolute = 1.3642420526593923569e-12 done [Level 1 step 2] Advanced 4096 cells Radiation deferred sync setup for coarse level 0... done Integrated Fluid Mass is 0.015394863670274892831 Integrated Fluid Energy is 709447.77384859882295 Integrated Radiant Energy is 29288227.166465058923 Flux Register Energy is -1.1622617533149873456e-06 Integrated Total Energy is 29997674.940312497318 [STEP 1] Coarse TimeStep time: 20.81369542 [STEP 1] FAB kilobyte spread across MPI nodes: [381765 ... 381765] STEP = 1 TIME = 1e-15 DT = 1e-15 [Level 0 step 2] ADVANCE at time 1e-15 with dt = 1.05e-15 Radiation flux initialization at level 0... done Radiation implicit update, level 0... Radiation Update: Iteration 1, Relative = 41.075798328605387155 Absolute = 285.14215141004433463 Radiation Update: Iteration 2, Relative = 0.70128009912250388602 Absolute = 33.627916367149282451 Radiation Update: Iteration 3, Relative = 0.084541388209284085153 Absolute = 0.54191827281829318963 Radiation Update: Iteration 4, Relative = 0.004043574421279898419 Absolute = 0.00013980735730001470074 Radiation Update: Iteration 5, Relative = 0.00023937818045940403638 Absolute = 8.0259146750805143711e-07 Radiation Update: Iteration 6, Relative = 4.1346497443275626292e-16 Absolute = 4.5474735088646411896e-13 done [Level 0 step 2] Advanced 2097152 cells [Level 1 step 3] ADVANCE at time 1e-15 with dt = 5.25e-16 Radiation flux initialization at level 1... done Radiation implicit update, level 1... Radiation Update: Iteration 1, Relative = 0.54641284635439402173 Absolute = 2.9436244644628573042 Radiation Update: Iteration 2, Relative = 0.083948168273111814508 Absolute = 0.024972607350363773548 Radiation Update: Iteration 3, Relative = 0.0076108392530417840263 Absolute = 0.00018989121619661375462 Radiation Update: Iteration 4, Relative = 3.3611508343305987918e-14 Absolute = 1.3642420526593923569e-12 done [Level 1 step 3] Advanced 4096 cells [Level 1 step 4] ADVANCE at time 1.525e-15 with dt = 5.25e-16 Radiation implicit update, level 1... Radiation Update: Iteration 1, Relative = 0.35303629913329753753 Absolute = 2.9178944731206346574 Radiation Update: Iteration 2, Relative = 0.03693670446363742782 Absolute = 0.020380594366429249931 Radiation Update: Iteration 3, Relative = 0.0022787336352588088983 Absolute = 0.00013162435776337133575 Radiation Update: Iteration 4, Relative = 2.1636132208589239413e-14 Absolute = 1.3642420526593923569e-12 done [Level 1 step 4] Advanced 4096 cells Radiation deferred sync setup for coarse level 0... done Integrated Fluid Mass is 0.015394863670274892831 Integrated Fluid Energy is 710342.77262448845431 Integrated Radiant Energy is 29287332.167688906193 Flux Register Energy is -9.7548753890787439541e-07 Integrated Total Energy is 29997674.940312419087 [STEP 2] Coarse TimeStep time: 5.608032848 [STEP 2] FAB kilobyte spread across MPI nodes: [381956 ... 381956] STEP = 2 TIME = 2.05e-15 DT = 1.05e-15 Now regridding at level lbase = 0 grid_places() time: 0.015529578 new finest: 1 Regridding radiation object at level 1... done STEP = 2 TIME = 2.05e-15 : REGRID with lbase = 0 Level 1 8 grids 32768 cells 0.1953125 % of domain smallest grid: 16 x 16 x 16 biggest grid: 16 x 16 x 16 [Level 0 step 3] ADVANCE at time 2.05e-15 with dt = 1.1025e-15 Radiation flux initialization at level 0... done Radiation implicit update, level 0... Radiation Update: Iteration 1, Relative = 20.853193550344439444 Absolute = 285.13245403782866561 Radiation Update: Iteration 2, Relative = 0.58147683155753338013 Absolute = 33.626305412896726921 Radiation Update: Iteration 3, Relative = 0.049883721652757749554 Absolute = 0.54187769453619694104 Radiation Update: Iteration 4, Relative = 0.0026300185572377507599 Absolute = 0.00013993746097185066901 Radiation Update: Iteration 5, Relative = 0.00013963684158169777918 Absolute = 8.6661158116285719188e-07 Radiation Update: Iteration 6, Relative = 2.8841654045367306109e-16 Absolute = 9.0949470177292823792e-13 done [Level 0 step 3] Advanced 2097152 cells [Level 1 step 5] ADVANCE at time 2.05e-15 with dt = 5.5125e-16 Radiation flux initialization at level 1... done Radiation implicit update, level 1... Radiation Update: Iteration 1, Relative = 0.27369076291192706574 Absolute = 3.0411087480215854839 Radiation Update: Iteration 2, Relative = 0.021992160092234629837 Absolute = 0.019316320396168151774 Radiation Update: Iteration 3, Relative = 0.00094537318952487051863 Absolute = 0.00011619634420512170436 Radiation Update: Iteration 4, Relative = 2.2158089437866693322e-14 Absolute = 9.0949470177292823792e-13 done [Level 1 step 5] Advanced 32768 cells [Level 1 step 6] ADVANCE at time 2.60125e-15 with dt = 5.5125e-16 Radiation implicit update, level 1... Radiation Update: Iteration 1, Relative = 0.21467196345547245873 Absolute = 3.0206419259916792441 Radiation Update: Iteration 2, Relative = 0.013431330131311340279 Absolute = 0.017036881971193906793 Radiation Update: Iteration 3, Relative = 0.00049108510390611845569 Absolute = 9.2054821454468083175e-05 Radiation Update: Iteration 4, Relative = 1.6659614140711882466e-14 Absolute = 9.0949470177292823792e-13 done [Level 1 step 6] Advanced 32768 cells Radiation deferred sync setup for coarse level 0... done Integrated Fluid Mass is 0.015394863670274819972 Integrated Fluid Energy is 711281.07259683741722 Integrated Radiant Energy is 29286393.867715489119 Flux Register Energy is 9.2765207824576655538e-14 Integrated Total Energy is 29997674.940312325954 [STEP 3] Coarse TimeStep time: 5.801197404 [STEP 3] FAB kilobyte spread across MPI nodes: [381956 ... 381956] STEP = 3 TIME = 3.1525e-15 DT = 1.1025e-15 [Level 0 step 4] ADVANCE at time 3.1525e-15 with dt = 1.157625e-15 Radiation flux initialization at level 0... done Radiation implicit update, level 0... Radiation Update: Iteration 1, Relative = 14.594754855865101462 Absolute = 285.07206111059667819 Radiation Update: Iteration 2, Relative = 0.51099978467695539308 Absolute = 33.61357590957550201 Radiation Update: Iteration 3, Relative = 0.036631894140127414794 Absolute = 0.54147749412913981359 Radiation Update: Iteration 4, Relative = 0.00201794587205189873 Absolute = 0.00013984414817969081923 Radiation Update: Iteration 5, Relative = 4.6879370458291014368e-15 Absolute = 9.5496943686157464981e-12 done [Level 0 step 4] Advanced 2097152 cells [Level 1 step 7] ADVANCE at time 3.1525e-15 with dt = 5.788125e-16 Radiation flux initialization at level 1... done Radiation implicit update, level 1... Radiation Update: Iteration 1, Relative = 0.1854133078333054796 Absolute = 3.1526844403844300757 Radiation Update: Iteration 2, Relative = 0.0098401135623457820778 Absolute = 0.016934946691186780754 Radiation Update: Iteration 3, Relative = 0.00039205049421427504283 Absolute = 8.7635873413205445104e-05 Radiation Update: Iteration 4, Relative = 1.8625811883700510299e-14 Absolute = 1.8189894035458564758e-12 done [Level 1 step 7] Advanced 32768 cells [Level 1 step 8] ADVANCE at time 3.7313125e-15 with dt = 5.788125e-16 Radiation implicit update, level 1... Radiation Update: Iteration 1, Relative = 0.15628586633639340864 Absolute = 3.134743235530830674 Radiation Update: Iteration 2, Relative = 0.0069133105575972771464 Absolute = 0.015432358364094511671 Radiation Update: Iteration 3, Relative = 0.00029546802907180779764 Absolute = 7.3611773174775407824e-05 Radiation Update: Iteration 4, Relative = 1.5099478276026251327e-14 Absolute = 1.3642420526593923569e-12 done [Level 1 step 8] Advanced 32768 cells Radiation deferred sync setup for coarse level 0... done Integrated Fluid Mass is 0.015394863670274819972 Integrated Fluid Energy is 712256.71972726634704 Integrated Radiant Energy is 29285418.220585085452 Flux Register Energy is -7.5475644347553625631e-13 Integrated Total Energy is 29997674.940312352031 [STEP 4] Coarse TimeStep time: 4.954059562 [STEP 4] FAB kilobyte spread across MPI nodes: [384692 ... 384692] STEP = 4 TIME = 4.310125e-15 DT = 1.157625e-15 Now regridding at level lbase = 0 grid_places() time: 0.014955862 new finest: 1 Regridding radiation object at level 1... done STEP = 4 TIME = 4.310125e-15 : REGRID with lbase = 0 Level 1 8 grids 32768 cells 0.1953125 % of domain smallest grid: 16 x 16 x 16 biggest grid: 16 x 16 x 16 [Level 0 step 5] ADVANCE at time 4.310125e-15 with dt = 1.21550625e-15 Radiation flux initialization at level 0... done Radiation implicit update, level 0... Radiation Update: Iteration 1, Relative = 11.529747077603856198 Absolute = 285.00830918719248075 Radiation Update: Iteration 2, Relative = 0.46308164711237287392 Absolute = 33.600098034219627152 Radiation Update: Iteration 3, Relative = 0.029571895693538637062 Absolute = 0.54105343411765716155 Radiation Update: Iteration 4, Relative = 0.0016787271577487065423 Absolute = 0.00013973119848742499016 Radiation Update: Iteration 5, Relative = 7.2698991551690783461e-15 Absolute = 9.0949470177292823792e-12 done [Level 0 step 5] Advanced 2097152 cells [Level 1 step 9] ADVANCE at time 4.310125e-15 with dt = 6.07753125e-16 Radiation flux initialization at level 1... done Radiation implicit update, level 1... Radiation Update: Iteration 1, Relative = 0.14182061814645949283 Absolute = 3.2742810833836912821 Radiation Update: Iteration 2, Relative = 0.0056134926065625149333 Absolute = 0.015706872603402644017 Radiation Update: Iteration 3, Relative = 0.00025141566372381630914 Absolute = 7.3175931227353885333e-05 Radiation Update: Iteration 4, Relative = 1.7771949245834723433e-14 Absolute = 1.3642420526593923569e-12 done [Level 1 step 9] Advanced 32768 cells [Level 1 step 10] ADVANCE at time 4.917878125e-15 with dt = 6.07753125e-16 Radiation implicit update, level 1... Radiation Update: Iteration 1, Relative = 0.12412021608235490611 Absolute = 3.2576373964191915888 Radiation Update: Iteration 2, Relative = 0.0042605287980643702025 Absolute = 0.01457624683325065007 Radiation Update: Iteration 3, Relative = 0.00019911742442456318723 Absolute = 6.3535372522238731108e-05 Radiation Update: Iteration 4, Relative = 1.4906246727192562549e-14 Absolute = 9.0949470177292823792e-13 done [Level 1 step 10] Advanced 32768 cells Radiation deferred sync setup for coarse level 0... done Integrated Fluid Mass is 0.015394863670274819972 Integrated Fluid Energy is 713272.29498282179702 Integrated Radiant Energy is 29284402.645329594612 Flux Register Energy is -7.3713322724497348774e-13 Integrated Total Energy is 29997674.940312415361 [STEP 5] Coarse TimeStep time: 5.030871421 [STEP 5] FAB kilobyte spread across MPI nodes: [384692 ... 384692] STEP = 5 TIME = 5.52563125e-15 DT = 1.21550625e-15 PLOTFILE: file = rad-thermalwave-3d_plt00005 Write plotfile time = 0.955833072 seconds Ending run at 15:08:50 UTC on 2024-01-06. Deleting radiation in variableCleanUp... done Run time = 44.78800527 Run time without initialization = 43.18516557 Average number of zones advanced per microsecond: 0.248 Average number of zones advanced per microsecond per rank: 0.031 TinyProfiler total time across processes [min...avg...max]: 44.78 ... 44.79 ... 44.79 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- HypreMultiABec::setupSolver 98 14.7233 14.7694 14.8310 33.11% HypreMultiABec::solve 98 14.34 14.4 14.44 32.25% HypreMultiABec::finalizeMatrix 98 1.031 1.25 1.41 3.15% Radiation::compute_eta 98 1.226 1.245 1.305 2.91% amrex::Copy() 1205 1.005 1.076 1.174 2.62% HypreMultiABec::clearSolver 98 0.9865 1.055 1.117 2.49% HypreMultiABec::loadMatrix 98 0.6514 0.7703 0.9061 2.02% FabArray::ParallelCopy_finish() 919 0.1928 0.5537 0.8827 1.97% Radiation::get_planck_and_temp 98 0.7785 0.7971 0.8618 1.92% AmrLevel::derive() 144 0.77 0.7951 0.8327 1.86% FabArray::setVal() 959 0.5849 0.6989 0.8036 1.79% update_rosseland_from_temp 83 0.7264 0.7464 0.7796 1.74% FillPatchIterator::Initialize 240 0.4192 0.4442 0.474 1.06% RadSolve::levelRhs 98 0.3933 0.4165 0.4539 1.01% RadSolve::levelBCoeffs 98 0.3952 0.4032 0.4179 0.93% FillBoundary_finish() 181 0.04124 0.2528 0.4052 0.90% HypreMultiABec::loadLevelVectors 98 0.3693 0.3818 0.3899 0.87% FabArray::ParallelCopy_nowait() 919 0.3076 0.3158 0.3216 0.72% Amr::writePlotFile() 2 0.1458 0.247 0.306 0.68% VisMF::Write(FabArray) 4 0.1691 0.207 0.2994 0.67% Radiation::compute_exchange 98 0.263 0.2735 0.2951 0.66% RadSolve::levelFlux 98 0.1816 0.2142 0.2605 0.58% RadSolve::levelFluxReg 98 0.1846 0.2279 0.2534 0.57% FillPatchSingleLevel 277 0.2187 0.2306 0.2445 0.55% Castro::reset_internal_energy(Fab) 7294 0.1767 0.1926 0.2062 0.46% Radiation::internal_energy_update 98 0.1689 0.1935 0.206 0.46% Castro::initialize_do_advance() 15 0.162 0.1717 0.1826 0.41% FluxRegister::Reflux() 156 0.1358 0.1559 0.1721 0.38% Radiation::get_rosseland 15 0.1579 0.1593 0.1616 0.36% Radiation::scaledGradient 98 0.108 0.1286 0.1531 0.34% HypreMultiABec::finalizeVectors 98 0.0875 0.1239 0.1528 0.34% RadSolve::levelACoeffs 98 0.1158 0.129 0.1496 0.33% Castro::initialize_advance() 15 0.1341 0.1443 0.1488 0.33% HypreMultiABec::vectorSetBoxValues 5362 0.09687 0.114 0.1409 0.31% Radiation::single_group_update 15 0.116 0.1248 0.1298 0.29% Radiation:fluxLimiter 98 0.1165 0.1219 0.1288 0.29% Castro::computeTemp() 76 0.09186 0.0997 0.1079 0.24% Radiation::get_c_v 10625 0.09445 0.09671 0.09934 0.22% HypreMultiABec::hmbc 8043 0.06575 0.07541 0.08467 0.19% FillBoundary_nowait() 181 0.04573 0.05929 0.08084 0.18% StateData::FillBoundary(geom) 962 0.05428 0.06451 0.08006 0.18% HypreMultiABec::hmmat3 1968 0.0617 0.07022 0.07866 0.18% Castro::normalize_species() 58 0.06522 0.0683 0.07269 0.16% HypreMultiABec::boundaryFlux 98 0.04243 0.05365 0.06567 0.15% Castro::Castro() 5 0.06012 0.06092 0.06281 0.14% Castro::swap_state_time_levels() 15 0.04115 0.04932 0.05768 0.13% Castro::initMFs() 5 0.05065 0.05099 0.05152 0.12% Castro::volWgtSum() 36 0.03118 0.04024 0.04777 0.11% HypreMultiABec::getAbsoluteResidual 98 0.02748 0.0398 0.04774 0.11% MultiFab::contains_nan() 15 0.02768 0.03716 0.04693 0.10% StateData::define() 15 0.04314 0.04343 0.0437 0.10% HypreMultiABec::hmac 2681 0.03183 0.03623 0.04228 0.09% Amr::FinalizeInit() 1 6.171e-06 0.005067 0.04048 0.09% Castro::initData() 3 0.03404 0.0365 0.0392 0.09% HypreMultiABec::getSolution 98 0.0243 0.03052 0.03774 0.08% Castro::enforce_min_density() 58 0.03073 0.03266 0.03676 0.08% AmrLevel::FillPatch() 225 0.03293 0.03481 0.03633 0.08% FabArray::setDomainBndry() 277 0.02893 0.03193 0.03469 0.08% HypreMultiABec::vectorGetBoxValues 2681 0.01669 0.02593 0.03116 0.07% Castro::buildMetrics() 5 0.02199 0.02225 0.02292 0.05% main() 1 0.0146 0.01984 0.02119 0.05% AmrMesh::MakeNewGrids() 4 0.01317 0.0136 0.01372 0.03% AMRErrorTag::operator() 4 0.008097 0.008602 0.008869 0.02% Castro::apply_tagging_restrictions() 4 0.007667 0.008176 0.008695 0.02% FillPatchInterp(MF) 37 0.0005855 0.005592 0.008299 0.02% DistributionMapping::LeastUsedCPUs() 11 0.0004395 0.003723 0.006825 0.02% FabArrayBase::CPC::define() 165 0.003472 0.003655 0.003846 0.01% FabArrayBase::getCPC() 742 0.001986 0.002373 0.002923 0.01% Radiation::Regrid 5 0.001766 0.001913 0.002439 0.01% FillPatchTwoLevels 126 0.0007551 0.001819 0.002362 0.01% Castro::build_fine_mask() 18 0.0009335 0.001784 0.002155 0.00% Castro::reset_internal_energy(MultiFab) 76 0.00189 0.001984 0.0021 0.00% Castro::enforce_consistent_e() 3 0.001523 0.00192 0.002037 0.00% Radiation::getBndryData 15 0.001454 0.001581 0.001735 0.00% FabArray::ParallelCopy() 919 0.001171 0.001283 0.001435 0.00% TagBoxArray::collate() 4 0.0002075 0.001055 0.001421 0.00% RadSolve::levelSolve 98 0.0008854 0.0009889 0.00115 0.00% Amr::regrid() 3 0.0004675 0.0006493 0.001108 0.00% Castro::finalize_advance() 15 0.0005646 0.0007792 0.001063 0.00% amrex::average_down 19 0.0007365 0.0008493 0.001011 0.00% OwnerMask() 4 0.0008496 0.0008981 0.0009617 0.00% Castro::post_timestep() 15 0.0005702 0.0006676 0.0008608 0.00% StateDataPhysBCFunct::() 277 0.0007646 0.0007965 0.0008583 0.00% FabArrayBase::FB::FB() 27 0.0007206 0.0007566 0.0008064 0.00% Amr::coarseTimeStep() 5 0.0003847 0.0006504 0.0006916 0.00% Amr::InitAmr() 1 0.0005467 0.0005508 0.0005554 0.00% Castro::finalize_do_advance() 15 0.0004159 0.0004712 0.0005273 0.00% FillPatchIterator::FillFromLevel0() 114 0.0004428 0.0004782 0.0005103 0.00% HypreMultiABec::bCoefficients 294 0.0003635 0.0004114 0.0004845 0.00% FabArray::FillBoundary() 181 0.0003029 0.0003583 0.000406 0.00% Amr::timeStep() 15 0.0002506 0.0002943 0.0003829 0.00% HypreMultiABec::aCoefficients 98 0.0001965 0.0002393 0.0003014 0.00% Castro::derive() 144 0.0002318 0.0002662 0.0002901 0.00% Amr::grid_places() 4 0.0001734 0.0001976 0.0002637 0.00% Castro::clean_state() 58 0.0001793 0.0002002 0.0002288 0.00% TagBoxArray::mapPRD 4 0.0002037 0.0002143 0.0002286 0.00% FabArrayBase::getFB() 181 0.0001525 0.0001757 0.0002227 0.00% FillPatchIterator::FillFromTwoLevels() 126 0.0001402 0.0001586 0.0001902 0.00% Radiation::init_flux 10 5.068e-05 8.109e-05 0.0001767 0.00% Castro::do_advance_ctu() 15 0.0001151 0.0001456 0.0001705 0.00% Castro::advance() 15 0.000113 0.0001361 0.0001672 0.00% Radiation::deferred_sync_setup 5 9.863e-05 0.0001239 0.0001478 0.00% Castro::post_init() 2 6.481e-05 8.879e-05 0.0001347 0.00% FPinfo::FPinfo() 8 8.995e-05 0.0001009 0.0001311 0.00% Castro::subcycle_advance_ctu() 15 7.179e-05 9.349e-05 0.0001206 0.00% FabSetT::linComb() 30 0.0001036 0.0001079 0.0001133 0.00% Castro::errorEst() 4 8.669e-05 9.479e-05 0.0001023 0.00% FabArrayBase::TheFPinfo() 37 6.888e-05 8.739e-05 0.000102 0.00% Castro::do_old_sources() 15 6.394e-05 7.024e-05 8.805e-05 0.00% Amr::defBaseLevel() 1 5.444e-05 6.297e-05 7.605e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 3 5.823e-05 6.39e-05 6.895e-05 0.00% Castro::do_new_sources() 15 4.185e-05 5.586e-05 6.446e-05 0.00% Castro::expand_state() 15 3.947e-05 4.99e-05 6.047e-05 0.00% AmrLevel::AmrLevel(dm) 5 3.8e-05 4.825e-05 5.843e-05 0.00% Castro::enforce_speed_limit() 58 4.447e-05 4.864e-05 5.648e-05 0.00% Radiation::pre_timestep 15 4.102e-05 4.717e-05 5.55e-05 0.00% Amr::writeSmallPlotFile() 1 4.087e-05 4.484e-05 5.23e-05 0.00% Castro::avgDown(state_indx) 19 2.084e-05 3.542e-05 5.229e-05 0.00% Castro::estTimeStep() 32 4.019e-05 4.724e-05 5.112e-05 0.00% RadSolve::levelBndry 15 1.758e-05 3.022e-05 4.784e-05 0.00% Castro::check_for_nan() 15 2.259e-05 2.949e-05 3.97e-05 0.00% Castro::retry_advance_ctu() 15 1.529e-05 2.763e-05 3.708e-05 0.00% Castro::post_regrid() 8 2.26e-05 2.792e-05 3.411e-05 0.00% Castro::create_source_corrector() 15 2.191e-05 2.537e-05 3.084e-05 0.00% amrex::average_down_w_geom 19 8.063e-06 1.511e-05 2.625e-05 0.00% ClusterList::intersect() 0 0 2.925e-06 2.34e-05 0.00% Radiation::filBndry 10 1.439e-05 1.587e-05 1.739e-05 0.00% Castro::apply_problem_tags() 4 1.298e-05 1.417e-05 1.579e-05 0.00% Amr::bldFineLevels() 1 1.238e-05 1.412e-05 1.537e-05 0.00% Amr::initSubcycle() 1 1.094e-05 1.177e-05 1.304e-05 0.00% AmrMesh-cluster 0 0 1.445e-06 1.156e-05 0.00% Castro::computeNewDt() 6 7.415e-06 8.725e-06 1.058e-05 0.00% BoxList::parallelComplementIn() 8 3.245e-06 4.45e-06 9.966e-06 0.00% Castro::init(old) 2 6.88e-06 8.088e-06 9.277e-06 0.00% DistributionMapping::Distribute() 3 7.269e-06 8.316e-06 9.186e-06 0.00% Castro::avgDown() 6 6.988e-06 7.583e-06 8.891e-06 0.00% Amr::InitializeInit() 1 1.962e-06 2.848e-06 5.364e-06 0.00% Castro::computeInitialDt() 2 2.186e-06 2.993e-06 4.107e-06 0.00% BoxList::complementIn 8 2.561e-06 3.02e-06 3.473e-06 0.00% Amr::initialInit() 1 1.633e-06 2.133e-06 3.191e-06 0.00% Amr::init() 1 1.866e-06 2.098e-06 2.377e-06 0.00% ClusterList::chop() 0 0 2.924e-07 2.339e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 44.78 44.79 44.79 100.00% Amr::coarseTimeStep() 5 42.21 42.21 42.21 94.24% Amr::timeStep() 15 42.21 42.21 42.21 94.24% Castro::advance() 15 41.99 42 42 93.78% Radiation::single_group_update 15 39.76 39.89 40.03 89.39% RadSolve::levelSolve 98 33.11 33.14 33.19 74.11% HypreMultiABec::setupSolver 98 14.72 14.77 14.83 33.11% HypreMultiABec::solve 98 14.34 14.4 14.44 32.25% Amr::writePlotFile() 2 2.162 2.197 2.202 4.92% FillPatchIterator::Initialize 240 1.543 1.718 1.89 4.22% AmrLevel::FillPatch() 225 1.761 1.806 1.852 4.14% Castro::derive() 144 1.723 1.751 1.78 3.97% AmrLevel::derive() 144 1.722 1.751 1.779 3.97% Castro::subcycle_advance_ctu() 15 1.439 1.529 1.608 3.59% Castro::do_advance_ctu() 15 1.439 1.529 1.608 3.59% Amr::init() 1 1.602 1.602 1.602 3.58% FabArray::ParallelCopy() 919 0.7673 1.116 1.441 3.22% HypreMultiABec::finalizeMatrix 98 1.031 1.25 1.41 3.15% Radiation::compute_eta 98 1.321 1.342 1.404 3.14% FillPatchSingleLevel 277 1.025 1.211 1.39 3.10% Castro::initialize_do_advance() 15 1.224 1.238 1.252 2.80% amrex::Copy() 1205 1.005 1.076 1.174 2.62% FillPatchIterator::FillFromLevel0() 114 0.7708 0.962 1.144 2.55% HypreMultiABec::clearSolver 98 0.9865 1.055 1.117 2.49% HypreMultiABec::loadMatrix 98 0.8245 0.9522 1.101 2.46% update_rosseland_from_temp 83 0.8543 0.9435 0.9835 2.20% Castro::expand_state() 15 0.8085 0.8427 0.8836 1.97% FabArray::ParallelCopy_finish() 919 0.1928 0.5537 0.8827 1.97% Radiation::get_planck_and_temp 98 0.7785 0.7971 0.8618 1.92% FabArray::setVal() 959 0.5849 0.6989 0.8036 1.79% Radiation::get_rosseland 15 0.4458 0.5639 0.6934 1.55% Castro::initialize_advance() 15 0.486 0.5324 0.5793 1.29% FabArray::ParallelCopy_nowait() 919 0.5465 0.5615 0.5735 1.28% HypreMultiABec::loadLevelVectors 98 0.4678 0.4957 0.5308 1.19% RadSolve::levelBCoeffs 98 0.4573 0.488 0.5164 1.15% RadSolve::levelFlux 98 0.3755 0.4303 0.4699 1.05% RadSolve::levelRhs 98 0.4014 0.425 0.4627 1.03% FabArray::FillBoundary() 181 0.1235 0.3134 0.4521 1.01% FillBoundary_finish() 181 0.04124 0.2528 0.4052 0.90% RadSolve::levelFluxReg 98 0.2948 0.3565 0.3975 0.89% Amr::initialInit() 1 0.356 0.361 0.3965 0.89% Castro::clean_state() 58 0.3227 0.3448 0.3682 0.82% Castro::computeTemp() 76 0.2717 0.2942 0.316 0.71% VisMF::Write(FabArray) 4 0.1691 0.207 0.2994 0.67% Radiation::compute_exchange 98 0.263 0.2735 0.2951 0.66% FluxRegister::Reflux() 156 0.2056 0.2424 0.2906 0.65% FillPatchIterator::FillFromTwoLevels() 126 0.2741 0.28 0.2847 0.64% FillPatchTwoLevels 126 0.274 0.2798 0.2845 0.64% Amr::InitializeInit() 1 0.2768 0.2808 0.2827 0.63% Amr::defBaseLevel() 1 0.2768 0.2808 0.2827 0.63% Castro::reset_internal_energy(MultiFab) 76 0.1786 0.1945 0.2081 0.46% Castro::reset_internal_energy(Fab) 7294 0.1767 0.1926 0.2062 0.46% Radiation::internal_energy_update 98 0.1689 0.1935 0.206 0.46% RadSolve::levelACoeffs 98 0.1562 0.1726 0.2021 0.45% Castro::Castro() 5 0.1723 0.1725 0.1728 0.39% Radiation::scaledGradient 98 0.108 0.1286 0.1531 0.34% HypreMultiABec::finalizeVectors 98 0.0875 0.1239 0.1528 0.34% Castro::do_old_sources() 15 0.06641 0.107 0.1445 0.32% HypreMultiABec::vectorSetBoxValues 5362 0.09687 0.114 0.1409 0.31% Castro::post_timestep() 15 0.1288 0.1289 0.129 0.29% Radiation:fluxLimiter 98 0.1165 0.1219 0.1288 0.29% Castro::do_new_sources() 15 0.08024 0.1013 0.1206 0.27% Amr::FinalizeInit() 1 0.07326 0.08024 0.1155 0.26% Amr::regrid() 3 0.1038 0.1077 0.113 0.25% HypreMultiABec::bCoefficients 294 0.05421 0.08482 0.1028 0.23% Radiation::get_c_v 10625 0.09445 0.09671 0.09934 0.22% HypreMultiABec::hmbc 8043 0.06575 0.07541 0.08467 0.19% FillBoundary_nowait() 181 0.04663 0.06022 0.08182 0.18% StateDataPhysBCFunct::() 277 0.05505 0.06531 0.08085 0.18% StateData::FillBoundary(geom) 962 0.05428 0.06451 0.08006 0.18% Castro::initData() 3 0.07309 0.07752 0.07963 0.18% HypreMultiABec::hmmat3 1968 0.0617 0.07022 0.07866 0.18% Castro::normalize_species() 58 0.06522 0.0683 0.07269 0.16% Amr::grid_places() 4 0.06314 0.06513 0.0694 0.15% AmrMesh::MakeNewGrids() 4 0.06297 0.06493 0.06922 0.15% HypreMultiABec::getSolution 98 0.04853 0.05645 0.06873 0.15% HypreMultiABec::boundaryFlux 98 0.04243 0.05365 0.06567 0.15% Castro::post_regrid() 8 0.05012 0.05399 0.05974 0.13% Castro::swap_state_time_levels() 15 0.04115 0.04932 0.05768 0.13% Amr::bldFineLevels() 1 0.051 0.05215 0.05605 0.13% HypreMultiABec::aCoefficients 98 0.02672 0.0436 0.05274 0.12% Castro::initMFs() 5 0.05065 0.05099 0.05152 0.12% Castro::volWgtSum() 36 0.03247 0.04202 0.04988 0.11% HypreMultiABec::getAbsoluteResidual 98 0.02748 0.0398 0.04774 0.11% Castro::check_for_nan() 15 0.02771 0.03719 0.04696 0.10% MultiFab::contains_nan() 15 0.02768 0.03716 0.04693 0.10% Castro::errorEst() 4 0.04303 0.04429 0.04573 0.10% AmrLevel::AmrLevel(dm) 5 0.0432 0.04348 0.04375 0.10% StateData::define() 15 0.04314 0.04343 0.0437 0.10% HypreMultiABec::hmac 2681 0.03183 0.03623 0.04228 0.09% Radiation::getBndryData 15 0.01083 0.02344 0.0406 0.09% Castro::enforce_min_density() 58 0.03073 0.03266 0.03676 0.08% FabArray::setDomainBndry() 277 0.02893 0.03193 0.03469 0.08% Castro::buildMetrics() 5 0.03052 0.03178 0.03204 0.07% HypreMultiABec::vectorGetBoxValues 2681 0.01669 0.02593 0.03116 0.07% Castro::post_init() 2 0.01234 0.01479 0.01551 0.03% Castro::finalize_do_advance() 15 0.008276 0.01077 0.01309 0.03% TagBoxArray::mapPRD 4 0.00345 0.005304 0.009535 0.02% AMRErrorTag::operator() 4 0.008097 0.008602 0.008869 0.02% Castro::apply_tagging_restrictions() 4 0.007667 0.008176 0.008695 0.02% FillPatchInterp(MF) 37 0.0005855 0.005592 0.008299 0.02% Castro::init(old) 2 0.007161 0.007227 0.007296 0.02% FabArrayBase::TheFPinfo() 37 0.0005524 0.003851 0.006988 0.02% FPinfo::FPinfo() 8 0.0004702 0.003763 0.006886 0.02% DistributionMapping::LeastUsedCPUs() 11 0.0004395 0.003723 0.006825 0.02% FabArrayBase::getCPC() 742 0.005524 0.006028 0.006769 0.02% Radiation::pre_timestep 15 0.001585 0.003783 0.004974 0.01% Radiation::init_flux 10 0.001536 0.003736 0.00492 0.01% FabArrayBase::CPC::define() 165 0.003472 0.003655 0.003846 0.01% Radiation::Regrid 5 0.001766 0.001913 0.002439 0.01% Castro::build_fine_mask() 18 0.0009335 0.001784 0.002155 0.00% Castro::enforce_consistent_e() 3 0.001523 0.00192 0.002037 0.00% Radiation::filBndry 10 0.00127 0.001514 0.001691 0.00% Castro::avgDown() 6 0.001105 0.001236 0.00148 0.00% Castro::avgDown(state_indx) 19 0.001101 0.001232 0.001477 0.00% amrex::average_down_w_geom 19 0.001074 0.001197 0.001424 0.00% TagBoxArray::collate() 4 0.0002075 0.001055 0.001421 0.00% amrex::average_down 19 0.001048 0.001182 0.001414 0.00% FabSetT::linComb() 30 0.0009527 0.001085 0.001205 0.00% Castro::finalize_advance() 15 0.0005646 0.0007792 0.001063 0.00% FabArrayBase::getFB() 181 0.000875 0.0009323 0.0009964 0.00% OwnerMask() 4 0.0008496 0.0008981 0.0009617 0.00% FabArrayBase::FB::FB() 27 0.0007206 0.0007566 0.0008064 0.00% Amr::InitAmr() 1 0.0005579 0.0005625 0.0005665 0.00% Radiation::deferred_sync_setup 5 9.863e-05 0.0001239 0.0001478 0.00% DistributionMapping::SFCProcessorMapDoIt() 3 8.908e-05 0.0001327 0.0001448 0.00% Castro::enforce_speed_limit() 58 4.447e-05 4.864e-05 5.648e-05 0.00% Amr::writeSmallPlotFile() 1 4.087e-05 4.484e-05 5.23e-05 0.00% Castro::estTimeStep() 32 4.019e-05 4.724e-05 5.112e-05 0.00% RadSolve::levelBndry 15 1.758e-05 3.022e-05 4.784e-05 0.00% AmrMesh-cluster 0 0 4.663e-06 3.73e-05 0.00% Castro::retry_advance_ctu() 15 1.529e-05 2.763e-05 3.708e-05 0.00% Castro::create_source_corrector() 15 2.191e-05 2.537e-05 3.084e-05 0.00% Castro::computeNewDt() 6 1.725e-05 2.023e-05 2.48e-05 0.00% ClusterList::intersect() 0 0 2.925e-06 2.34e-05 0.00% Castro::apply_problem_tags() 4 1.298e-05 1.417e-05 1.579e-05 0.00% Amr::initSubcycle() 1 1.094e-05 1.177e-05 1.304e-05 0.00% BoxList::parallelComplementIn() 8 5.879e-06 7.47e-06 1.253e-05 0.00% DistributionMapping::Distribute() 3 7.269e-06 8.316e-06 9.186e-06 0.00% Castro::computeInitialDt() 2 2.186e-06 2.993e-06 4.107e-06 0.00% BoxList::complementIn 8 2.561e-06 3.02e-06 3.473e-06 0.00% ClusterList::chop() 0 0 2.924e-07 2.339e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::habec.verbose(nvals = 1) :: [1] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 2 B 4 B 5 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.01-1-gf1ec8df75c56) finalized