Initializing AMReX (24.01-1-gf1ec8df75c56)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.01-1-gf1ec8df75c56) initialized Starting run at 06:32:21 UTC on 2024-01-08. Successfully read inputs file ... Castro git describe: 24.01-5-g92138399c AMReX git describe: 24.01-1-gf1ec8df75 Microphysics git describe: 24.01-8-g518b421f reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01363104 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.361357177 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.35622689 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.332694431 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.335455811 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.33587871 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.385045686 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.317068715 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.313105328 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.313024086 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.313378537 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007636318 seconds Ending run at 06:32:25 UTC on 2024-01-08. Run time = 3.560746858 Run time without initialization = 3.376731696 Average number of zones advanced per microsecond: 0.776 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.559 ... 3.56 ... 3.561 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3196 2.3729 2.4357 68.40% Gravity::make_radial_gravity() 21 0.2906 0.3121 0.3199 8.99% check_for_negative_density() 10 0.01395 0.07983 0.1354 3.80% Castro::initData() 1 0.04774 0.08693 0.1205 3.38% Castro::estTimeStep() 21 0.02291 0.06315 0.1055 2.96% amrex::Copy() 193 0.07648 0.08403 0.09749 2.74% FabArray::setVal() 143 0.06939 0.07595 0.08766 2.46% FabArray::ParallelCopy_finish() 41 0.04694 0.06558 0.07341 2.06% Castro::reset_internal_energy(Fab) 1008 0.04609 0.04903 0.05498 1.54% FabArray::ParallelCopy_nowait() 41 0.04052 0.04387 0.04854 1.36% Castro::normalize_species() 62 0.04158 0.04245 0.04295 1.21% StateData::FillBoundary(geom) 41 0.03004 0.03231 0.03694 1.04% FillPatchIterator::Initialize 41 0.02807 0.03421 0.0369 1.04% Gravity::interpolate_monopole_grav() 21 0.02726 0.02915 0.03012 0.85% Castro::construct_new_gravity_source() 10 0.02364 0.02515 0.02692 0.76% Castro::initialize_do_advance() 10 0.01482 0.01813 0.02094 0.59% Castro::computeTemp() 63 0.01846 0.01985 0.02073 0.58% FabArray::setDomainBndry() 41 0.007233 0.01053 0.01684 0.47% Castro::initialize_advance() 10 0.01069 0.01324 0.01619 0.45% MultiFab::contains_nan() 20 0.01024 0.01178 0.01502 0.42% FabArray::Saxpy() 20 0.0126 0.01339 0.0143 0.40% VisMF::Write(FabArray) 2 0.008771 0.009482 0.01229 0.35% Castro::construct_old_gravity_source() 10 0.009672 0.01027 0.01082 0.30% Amr::writePlotFile() 2 0.006251 0.008861 0.009658 0.27% Castro::initMFs() 1 0.006286 0.006697 0.007879 0.22% Castro::construct_new_source() 50 0.006268 0.006554 0.006824 0.19% Castro::enforce_min_density() 62 0.0059 0.006252 0.006514 0.18% StateData::define() 4 0.005096 0.005315 0.005861 0.16% main() 1 0.003302 0.00462 0.005151 0.14% Castro::swap_state_time_levels() 10 0.003327 0.004478 0.005059 0.14% Gravity::get_new_grav_vector() 11 0.003049 0.003596 0.004036 0.11% Gravity::get_old_grav_vector() 10 0.001535 0.002072 0.002631 0.07% Amr::coarseTimeStep() 10 0.001393 0.001825 0.002491 0.07% Castro::buildMetrics() 1 0.001504 0.001577 0.00175 0.05% Castro::finalize_do_advance() 10 0.001089 0.001318 0.001572 0.04% AmrLevel::FillPatch() 41 0.0008207 0.0009869 0.001477 0.04% Amr::InitAmr() 1 0.0003427 0.0003809 0.0004862 0.01% Amr::timeStep() 10 0.0001545 0.0002242 0.0004658 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002811 0.0002999 0.0003614 0.01% Castro::do_advance_ctu() 10 0.0001185 0.0001502 0.0001776 0.00% Castro::clean_state() 62 0.0001392 0.0001562 0.0001706 0.00% StateDataPhysBCFunct::() 41 9.388e-05 0.0001244 0.0001683 0.00% DistributionMapping::LeastUsedCPUs() 1 6.638e-06 0.0001129 0.0001514 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001014 0.000117 0.0001437 0.00% Castro::do_old_sources() 10 8.267e-05 9.651e-05 0.0001224 0.00% Castro::finalize_advance() 10 7.097e-05 8.72e-05 0.0001127 0.00% FabArray::ParallelCopy() 41 7.029e-05 9.215e-05 0.0001013 0.00% Castro::enforce_consistent_e() 1 8.065e-05 8.948e-05 9.716e-05 0.00% Castro::do_new_sources() 10 5.944e-05 6.743e-05 9.116e-05 0.00% Castro::construct_old_source() 50 6.672e-05 7.646e-05 8.91e-05 0.00% Castro::Castro() 1 5.766e-05 6.862e-05 8.764e-05 0.00% FillPatchSingleLevel 41 6.829e-05 7.582e-05 8.359e-05 0.00% Amr::writeSmallPlotFile() 1 3.138e-05 5.63e-05 7.88e-05 0.00% Amr::FinalizeInit() 1 4.241e-06 1.306e-05 7.057e-05 0.00% FabArrayBase::getCPC() 41 3.844e-05 4.764e-05 6.144e-05 0.00% Castro::subcycle_advance_ctu() 10 4.182e-05 5.215e-05 5.98e-05 0.00% Castro::apply_source_to_state() 20 3.921e-05 4.659e-05 5.837e-05 0.00% Castro::advance() 10 3.966e-05 4.806e-05 5.635e-05 0.00% Castro::construct_old_gravity() 10 3.161e-05 4.195e-05 5.43e-05 0.00% Castro::construct_new_gravity() 10 3.161e-05 3.774e-05 4.949e-05 0.00% Castro::expand_state() 10 2.269e-05 2.894e-05 3.536e-05 0.00% Castro::enforce_speed_limit() 62 2.472e-05 2.757e-05 3e-05 0.00% FabArrayBase::CPC::define() 2 2.256e-05 2.525e-05 2.937e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.714e-05 2.154e-05 2.772e-05 0.00% Castro::check_for_nan() 20 2.022e-05 2.352e-05 2.62e-05 0.00% Amr::defBaseLevel() 1 1.6e-05 1.971e-05 2.582e-05 0.00% Castro::post_timestep() 10 1.166e-05 1.462e-05 2.018e-05 0.00% Castro::post_init() 1 1.513e-05 1.682e-05 1.982e-05 0.00% Amr::initSubcycle() 1 9.41e-06 1.088e-05 1.535e-05 0.00% Gravity::swapTimeLevels() 10 8.382e-06 1.124e-05 1.474e-05 0.00% Gravity::set_mass_offset() 10 8.552e-06 1.114e-05 1.455e-05 0.00% Castro::create_source_corrector() 10 7.36e-06 9.125e-06 1.058e-05 0.00% Castro::FluxRegCrseInit 10 5.475e-06 7.874e-06 1.016e-05 0.00% Castro::computeNewDt() 9 7.501e-06 8.213e-06 8.972e-06 0.00% Castro::retry_advance_ctu() 10 6.457e-06 7.182e-06 7.615e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.628e-06 4.339e-06 6.111e-06 0.00% Amr::InitializeInit() 1 1.767e-06 2.248e-06 4.412e-06 0.00% Castro::post_regrid() 1 1.609e-06 3.142e-06 4.403e-06 0.00% Castro::computeInitialDt() 2 3.004e-06 3.672e-06 4.353e-06 0.00% Amr::init() 1 1.951e-06 2.62e-06 3.857e-06 0.00% Castro::FluxRegFineAdd() 10 2.056e-06 2.389e-06 2.686e-06 0.00% Amr::initialInit() 1 1.439e-06 1.873e-06 2.583e-06 0.00% DistributionMapping::Distribute() 1 8.98e-07 1.124e-06 2.002e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.559 3.56 3.561 100.00% Amr::coarseTimeStep() 10 3.364 3.364 3.364 94.47% Amr::timeStep() 10 3.351 3.352 3.352 94.14% Castro::advance() 10 3.335 3.335 3.336 93.68% Castro::subcycle_advance_ctu() 10 3.235 3.253 3.259 91.51% Castro::do_advance_ctu() 10 3.235 3.253 3.259 91.51% Castro::construct_ctu_hydro_source() 10 2.469 2.473 2.478 69.59% Gravity::make_radial_gravity() 21 0.3063 0.3287 0.3375 9.48% AmrLevel::FillPatch() 41 0.1932 0.2216 0.2331 6.55% Castro::construct_old_gravity() 10 0.1856 0.2047 0.2127 5.97% Gravity::get_old_grav_vector() 10 0.1845 0.2038 0.2121 5.96% Gravity::get_new_grav_vector() 11 0.2091 0.2101 0.2114 5.94% Castro::initialize_do_advance() 10 0.1699 0.1882 0.2068 5.81% FillPatchIterator::Initialize 41 0.1638 0.187 0.1973 5.54% Castro::construct_new_gravity() 10 0.1842 0.1851 0.186 5.22% Amr::init() 1 0.1834 0.1835 0.1835 5.15% Amr::initialInit() 1 0.1696 0.1699 0.1701 4.78% FillPatchIterator::FillFromLevel0() 41 0.1276 0.1422 0.1497 4.20% FillPatchSingleLevel 41 0.1275 0.1421 0.1496 4.20% Castro::expand_state() 10 0.111 0.1316 0.1484 4.17% Amr::InitializeInit() 1 0.06765 0.1071 0.1414 3.97% Amr::defBaseLevel() 1 0.06765 0.1071 0.1414 3.97% check_for_negative_density() 10 0.01395 0.07983 0.1354 3.80% Castro::initData() 1 0.05194 0.09089 0.124 3.48% Castro::clean_state() 62 0.1119 0.1171 0.1235 3.47% FabArray::ParallelCopy() 41 0.09562 0.1096 0.1162 3.26% Castro::estTimeStep() 21 0.02291 0.06315 0.1055 2.96% Castro::do_old_sources() 10 0.0959 0.1002 0.1045 2.94% Amr::FinalizeInit() 1 0.02825 0.06284 0.1025 2.88% amrex::Copy() 193 0.07648 0.08403 0.09749 2.74% Castro::initialize_advance() 10 0.07359 0.0793 0.09644 2.71% FabArray::setVal() 143 0.06939 0.07595 0.08766 2.46% Castro::computeInitialDt() 2 0.002298 0.03662 0.07609 2.14% Castro::computeTemp() 63 0.06482 0.06917 0.07528 2.11% FabArray::ParallelCopy_finish() 41 0.04694 0.06558 0.07341 2.06% Castro::do_new_sources() 10 0.06179 0.06582 0.07084 1.99% Castro::reset_internal_energy(MultiFab) 63 0.04637 0.04933 0.05534 1.55% Castro::reset_internal_energy(Fab) 1008 0.04609 0.04903 0.05498 1.54% FabArray::ParallelCopy_nowait() 41 0.04059 0.04394 0.04861 1.37% Castro::normalize_species() 62 0.04158 0.04245 0.04295 1.21% StateDataPhysBCFunct::() 41 0.03015 0.03243 0.03703 1.04% StateData::FillBoundary(geom) 41 0.03004 0.03231 0.03694 1.04% Castro::construct_new_source() 50 0.02998 0.0317 0.03373 0.95% Gravity::interpolate_monopole_grav() 21 0.02726 0.02915 0.03012 0.85% Castro::construct_new_gravity_source() 10 0.02364 0.02515 0.02692 0.76% Castro::post_init() 1 0.02559 0.02591 0.0262 0.74% Castro::finalize_do_advance() 10 0.01239 0.01848 0.02382 0.67% Amr::writePlotFile() 2 0.02108 0.02125 0.02152 0.60% FabArray::setDomainBndry() 41 0.007233 0.01053 0.01684 0.47% Castro::post_timestep() 10 0.01532 0.01586 0.01629 0.46% Castro::check_for_nan() 20 0.01027 0.0118 0.01504 0.42% MultiFab::contains_nan() 20 0.01024 0.01178 0.01502 0.42% Castro::apply_source_to_state() 20 0.01264 0.01344 0.01436 0.40% FabArray::Saxpy() 20 0.0126 0.01339 0.0143 0.40% VisMF::Write(FabArray) 2 0.008771 0.009482 0.01229 0.35% Castro::Castro() 1 0.01037 0.01072 0.01154 0.32% Castro::construct_old_source() 50 0.009743 0.01035 0.01091 0.31% Castro::construct_old_gravity_source() 10 0.009672 0.01027 0.01082 0.30% Castro::computeNewDt() 9 0.00937 0.009375 0.009378 0.26% Castro::initMFs() 1 0.006286 0.006697 0.007879 0.22% Castro::enforce_min_density() 62 0.0059 0.006252 0.006514 0.18% AmrLevel::AmrLevel(dm) 1 0.005124 0.005337 0.005881 0.17% StateData::define() 4 0.005096 0.005315 0.005861 0.16% Castro::swap_state_time_levels() 10 0.003327 0.004478 0.005059 0.14% Castro::finalize_advance() 10 0.003172 0.003369 0.003562 0.10% Castro::buildMetrics() 1 0.00162 0.001703 0.001896 0.05% Castro::post_regrid() 1 0.00146 0.001578 0.001808 0.05% Amr::InitAmr() 1 0.0003529 0.0003917 0.0004956 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.138e-05 0.0001184 0.0001585 0.00% DistributionMapping::LeastUsedCPUs() 1 6.638e-06 0.0001129 0.0001514 0.00% Castro::enforce_consistent_e() 1 8.065e-05 8.948e-05 9.716e-05 0.00% FabArrayBase::getCPC() 41 6.405e-05 7.289e-05 9.081e-05 0.00% Amr::writeSmallPlotFile() 1 3.138e-05 5.63e-05 7.88e-05 0.00% Castro::enforce_speed_limit() 62 2.472e-05 2.757e-05 3e-05 0.00% FabArrayBase::CPC::define() 2 2.256e-05 2.525e-05 2.937e-05 0.00% Amr::initSubcycle() 1 9.41e-06 1.088e-05 1.535e-05 0.00% Gravity::swapTimeLevels() 10 8.382e-06 1.124e-05 1.474e-05 0.00% Gravity::set_mass_offset() 10 8.552e-06 1.114e-05 1.455e-05 0.00% Castro::create_source_corrector() 10 7.36e-06 9.125e-06 1.058e-05 0.00% Castro::FluxRegCrseInit 10 5.475e-06 7.874e-06 1.016e-05 0.00% Castro::retry_advance_ctu() 10 6.457e-06 7.182e-06 7.615e-06 0.00% Castro::FluxRegFineAdd() 10 2.056e-06 2.389e-06 2.686e-06 0.00% DistributionMapping::Distribute() 1 8.98e-07 1.124e-06 2.002e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 31 B 35 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.01-1-gf1ec8df75c56) finalized