Initializing AMReX (24.01-2-ge0b77e1fce49)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.01-2-ge0b77e1fce49) initialized Starting run at 06:32:54 UTC on 2024-01-09. Successfully read inputs file ... Castro git describe: 24.01-5-g92138399c AMReX git describe: 24.01-2-ge0b77e1fc Microphysics git describe: 24.01-8-g518b421f reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.012801874 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.350087586 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.343790742 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.329309857 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.328494973 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.330143179 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.363667359 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.318166174 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.312247795 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.313260775 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.312314195 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007487255 seconds Ending run at 06:32:58 UTC on 2024-01-09. Run time = 3.52276882 Run time without initialization = 3.314543752 Average number of zones advanced per microsecond: 0.791 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.522 ... 3.523 ... 3.523 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3481 2.3826 2.4141 68.53% Gravity::make_radial_gravity() 21 0.29 0.2951 0.3069 8.71% Castro::initData() 1 0.04856 0.09295 0.1401 3.98% Castro::estTimeStep() 21 0.02304 0.08012 0.131 3.72% FabArray::ParallelCopy_finish() 41 0.03481 0.05751 0.1036 2.94% amrex::Copy() 193 0.06436 0.08081 0.09864 2.80% check_for_negative_density() 10 0.03083 0.05964 0.09479 2.69% FabArray::setVal() 143 0.0536 0.06765 0.07761 2.20% Castro::reset_internal_energy(Fab) 1008 0.04552 0.04795 0.04944 1.40% Castro::normalize_species() 62 0.04097 0.04186 0.0425 1.21% FabArray::ParallelCopy_nowait() 41 0.03488 0.04017 0.04225 1.20% StateData::FillBoundary(geom) 41 0.03061 0.03244 0.03505 0.99% FillPatchIterator::Initialize 41 0.0271 0.03167 0.03464 0.98% Gravity::interpolate_monopole_grav() 21 0.02752 0.02964 0.03221 0.91% Castro::construct_new_gravity_source() 10 0.02182 0.02428 0.02632 0.75% Castro::computeTemp() 63 0.01796 0.01965 0.02059 0.58% Castro::initialize_do_advance() 10 0.01179 0.01664 0.01787 0.51% MultiFab::contains_nan() 20 0.01079 0.01219 0.01654 0.47% Castro::initialize_advance() 10 0.003874 0.01092 0.01458 0.41% FabArray::Saxpy() 20 0.01035 0.01232 0.0138 0.39% FabArray::setDomainBndry() 41 0.006245 0.009105 0.01182 0.34% VisMF::Write(FabArray) 2 0.008747 0.009357 0.01173 0.33% Castro::construct_old_gravity_source() 10 0.006533 0.009237 0.01015 0.29% Castro::initMFs() 1 0.006258 0.007435 0.009763 0.28% Amr::writePlotFile() 2 0.00601 0.008525 0.009265 0.26% StateData::define() 4 0.005182 0.006085 0.007944 0.23% Castro::enforce_min_density() 62 0.007344 0.007573 0.00783 0.22% Castro::construct_new_source() 50 0.00575 0.006262 0.006672 0.19% main() 1 0.003716 0.004619 0.00487 0.14% Castro::swap_state_time_levels() 10 0.003197 0.004213 0.00446 0.13% Gravity::get_new_grav_vector() 11 0.002896 0.003532 0.003954 0.11% Gravity::get_old_grav_vector() 10 0.001676 0.002084 0.002475 0.07% Castro::buildMetrics() 1 0.001468 0.001728 0.002254 0.06% Amr::coarseTimeStep() 10 0.001165 0.00162 0.002101 0.06% Castro::finalize_do_advance() 10 0.0004923 0.001112 0.001463 0.04% AmrLevel::FillPatch() 41 0.0008441 0.000961 0.001114 0.03% Amr::InitAmr() 1 0.0003324 0.0004547 0.0006568 0.02% Amr::timeStep() 10 0.000172 0.0002291 0.0004955 0.01% DistributionMapping::LeastUsedCPUs() 1 7.249e-06 0.0002227 0.0003592 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002902 0.0002986 0.000312 0.01% Castro::do_advance_ctu() 10 0.0001284 0.0001532 0.0001867 0.01% Castro::clean_state() 62 0.0001387 0.0001631 0.0001812 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001043 0.0001261 0.0001541 0.00% Castro::finalize_advance() 10 7.891e-05 9.901e-05 0.0001238 0.00% StateDataPhysBCFunct::() 41 0.0001005 0.0001101 0.0001215 0.00% Castro::do_old_sources() 10 8.25e-05 9.697e-05 0.0001193 0.00% Castro::construct_old_gravity() 10 3.605e-05 5.618e-05 0.0001016 0.00% Castro::enforce_consistent_e() 1 8.059e-05 8.742e-05 9.836e-05 0.00% FabArray::ParallelCopy() 41 7.81e-05 8.546e-05 9.666e-05 0.00% Castro::construct_old_source() 50 6.293e-05 7.218e-05 8.97e-05 0.00% Castro::do_new_sources() 10 5.85e-05 6.79e-05 8.739e-05 0.00% Castro::Castro() 1 5.574e-05 6.724e-05 8.537e-05 0.00% FillPatchSingleLevel 41 6.924e-05 7.409e-05 7.853e-05 0.00% Castro::advance() 10 4.822e-05 5.556e-05 7.844e-05 0.00% FabArrayBase::getCPC() 41 4.84e-05 6.242e-05 7.689e-05 0.00% Castro::check_for_nan() 20 2.248e-05 3.317e-05 7.088e-05 0.00% Amr::writeSmallPlotFile() 1 2.954e-05 5.413e-05 6.975e-05 0.00% Castro::apply_source_to_state() 20 3.907e-05 5.07e-05 6.911e-05 0.00% Amr::FinalizeInit() 1 4.312e-06 1.276e-05 6.741e-05 0.00% Castro::subcycle_advance_ctu() 10 4.406e-05 5.173e-05 6.134e-05 0.00% Castro::construct_new_gravity() 10 3.433e-05 3.809e-05 4.442e-05 0.00% Castro::enforce_speed_limit() 62 2.798e-05 3.214e-05 3.997e-05 0.00% Castro::expand_state() 10 2.46e-05 2.822e-05 3.357e-05 0.00% FabArrayBase::CPC::define() 2 2.073e-05 2.614e-05 3.142e-05 0.00% Amr::defBaseLevel() 1 1.672e-05 1.949e-05 2.68e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.66e-05 1.95e-05 2.593e-05 0.00% Castro::post_timestep() 10 1.155e-05 1.539e-05 2.423e-05 0.00% Amr::initSubcycle() 1 9.775e-06 1.384e-05 2.319e-05 0.00% Castro::post_init() 1 1.474e-05 1.678e-05 1.955e-05 0.00% Gravity::set_mass_offset() 10 9.639e-06 1.156e-05 1.31e-05 0.00% Gravity::swapTimeLevels() 10 8.189e-06 9.763e-06 1.237e-05 0.00% Castro::computeNewDt() 9 7.379e-06 8.625e-06 1.087e-05 0.00% Castro::create_source_corrector() 10 6.892e-06 8.828e-06 1.001e-05 0.00% Castro::FluxRegCrseInit 10 7.572e-06 8.788e-06 9.428e-06 0.00% Amr::initialInit() 1 1.185e-06 2.541e-06 8.947e-06 0.00% Castro::retry_advance_ctu() 10 6.233e-06 7.561e-06 8.499e-06 0.00% Castro::post_regrid() 1 2.255e-06 3.549e-06 7.335e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.662e-06 4.705e-06 5.864e-06 0.00% Amr::InitializeInit() 1 1.57e-06 2.324e-06 5.205e-06 0.00% Castro::computeInitialDt() 2 2.684e-06 3.636e-06 4.591e-06 0.00% Castro::FluxRegFineAdd() 10 1.999e-06 2.494e-06 2.946e-06 0.00% Amr::init() 1 1.865e-06 2.245e-06 2.533e-06 0.00% DistributionMapping::Distribute() 1 8.85e-07 1.195e-06 1.696e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.522 3.523 3.523 100.00% Amr::coarseTimeStep() 10 3.302 3.302 3.302 93.74% Amr::timeStep() 10 3.29 3.29 3.291 93.41% Castro::advance() 10 3.274 3.274 3.275 92.95% Castro::subcycle_advance_ctu() 10 3.196 3.2 3.218 91.35% Castro::do_advance_ctu() 10 3.196 3.2 3.218 91.35% Castro::construct_ctu_hydro_source() 10 2.458 2.463 2.468 70.04% Gravity::make_radial_gravity() 21 0.3066 0.312 0.3195 9.07% AmrLevel::FillPatch() 41 0.1809 0.2029 0.2293 6.51% Gravity::get_new_grav_vector() 11 0.207 0.2079 0.2091 5.94% Amr::init() 1 0.2074 0.2076 0.2077 5.90% FillPatchIterator::Initialize 41 0.1504 0.1714 0.2047 5.81% Castro::construct_old_gravity() 10 0.1858 0.1916 0.1984 5.63% Gravity::get_old_grav_vector() 10 0.1851 0.1905 0.1977 5.61% Amr::initialInit() 1 0.1942 0.1946 0.1949 5.53% Castro::construct_new_gravity() 10 0.1816 0.1828 0.1847 5.24% Castro::initialize_do_advance() 10 0.1548 0.1634 0.1756 4.98% FillPatchIterator::FillFromLevel0() 41 0.1105 0.1306 0.1714 4.86% FillPatchSingleLevel 41 0.1104 0.1305 0.1712 4.86% Amr::InitializeInit() 1 0.06764 0.1142 0.1656 4.70% Amr::defBaseLevel() 1 0.06763 0.1142 0.1656 4.70% Castro::initData() 1 0.05248 0.09676 0.1438 4.08% FabArray::ParallelCopy() 41 0.07605 0.09785 0.1387 3.94% Castro::estTimeStep() 21 0.02304 0.08012 0.131 3.72% Amr::FinalizeInit() 1 0.02858 0.08042 0.127 3.60% Castro::expand_state() 10 0.09918 0.1086 0.1248 3.54% Castro::clean_state() 62 0.1126 0.1166 0.1194 3.39% Castro::do_old_sources() 10 0.09166 0.09944 0.1047 2.97% FabArray::ParallelCopy_finish() 41 0.03481 0.05751 0.1036 2.94% Castro::computeInitialDt() 2 0.002268 0.05391 0.1004 2.85% amrex::Copy() 193 0.06436 0.08081 0.09864 2.80% check_for_negative_density() 10 0.03083 0.05964 0.09479 2.69% FabArray::setVal() 143 0.0536 0.06765 0.07761 2.20% Castro::initialize_advance() 10 0.05193 0.0706 0.07481 2.12% Castro::computeTemp() 63 0.06377 0.0679 0.07032 2.00% Castro::do_new_sources() 10 0.06016 0.06316 0.0688 1.95% Castro::reset_internal_energy(MultiFab) 63 0.04581 0.04825 0.04973 1.41% Castro::reset_internal_energy(Fab) 1008 0.04552 0.04795 0.04944 1.40% Castro::normalize_species() 62 0.04097 0.04186 0.0425 1.21% FabArray::ParallelCopy_nowait() 41 0.03499 0.04025 0.04233 1.20% StateDataPhysBCFunct::() 41 0.03073 0.03255 0.03515 1.00% StateData::FillBoundary(geom) 41 0.03061 0.03244 0.03505 0.99% Castro::construct_new_source() 50 0.02757 0.03054 0.033 0.94% Gravity::interpolate_monopole_grav() 21 0.02752 0.02964 0.03221 0.91% Castro::construct_new_gravity_source() 10 0.02182 0.02428 0.02632 0.75% Castro::post_init() 1 0.02578 0.02605 0.02631 0.75% Castro::finalize_do_advance() 10 0.01189 0.01812 0.02238 0.64% Amr::writePlotFile() 2 0.02042 0.02056 0.02075 0.59% Castro::check_for_nan() 20 0.01082 0.01222 0.01658 0.47% MultiFab::contains_nan() 20 0.01079 0.01219 0.01654 0.47% Castro::post_timestep() 10 0.01502 0.01593 0.01631 0.46% Castro::apply_source_to_state() 20 0.0104 0.01237 0.01387 0.39% Castro::Castro() 1 0.009774 0.01107 0.01381 0.39% FabArray::Saxpy() 20 0.01035 0.01232 0.0138 0.39% FabArray::setDomainBndry() 41 0.006245 0.009105 0.01182 0.34% VisMF::Write(FabArray) 2 0.008747 0.009357 0.01173 0.33% Castro::construct_old_source() 50 0.006602 0.009309 0.01024 0.29% Castro::construct_old_gravity_source() 10 0.006533 0.009237 0.01015 0.29% Castro::initMFs() 1 0.006258 0.007435 0.009763 0.28% Castro::computeNewDt() 9 0.009191 0.009211 0.009222 0.26% AmrLevel::AmrLevel(dm) 1 0.0052 0.006104 0.007969 0.23% StateData::define() 4 0.005182 0.006085 0.007944 0.23% Castro::enforce_min_density() 62 0.007344 0.007573 0.00783 0.22% Castro::swap_state_time_levels() 10 0.003197 0.004213 0.00446 0.13% Castro::finalize_advance() 10 0.003056 0.00334 0.003557 0.10% Castro::buildMetrics() 1 0.001583 0.001879 0.002473 0.07% Castro::post_regrid() 1 0.001503 0.001682 0.00198 0.06% Amr::InitAmr() 1 0.0003429 0.0004685 0.0006734 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.244e-05 0.0002286 0.0003661 0.01% DistributionMapping::LeastUsedCPUs() 1 7.249e-06 0.0002227 0.0003592 0.01% FabArrayBase::getCPC() 41 7.309e-05 8.856e-05 0.0001068 0.00% Castro::enforce_consistent_e() 1 8.059e-05 8.742e-05 9.836e-05 0.00% Amr::writeSmallPlotFile() 1 2.954e-05 5.413e-05 6.975e-05 0.00% Castro::enforce_speed_limit() 62 2.798e-05 3.214e-05 3.997e-05 0.00% FabArrayBase::CPC::define() 2 2.073e-05 2.614e-05 3.142e-05 0.00% Amr::initSubcycle() 1 9.775e-06 1.384e-05 2.319e-05 0.00% Gravity::set_mass_offset() 10 9.639e-06 1.156e-05 1.31e-05 0.00% Gravity::swapTimeLevels() 10 8.189e-06 9.763e-06 1.237e-05 0.00% Castro::create_source_corrector() 10 6.892e-06 8.828e-06 1.001e-05 0.00% Castro::FluxRegCrseInit 10 7.572e-06 8.788e-06 9.428e-06 0.00% Castro::retry_advance_ctu() 10 6.233e-06 7.561e-06 8.499e-06 0.00% Castro::FluxRegFineAdd() 10 1.999e-06 2.494e-06 2.946e-06 0.00% DistributionMapping::Distribute() 1 8.85e-07 1.195e-06 1.696e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 34 B 43 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.01-2-ge0b77e1fce49) finalized