Initializing AMReX (24.01-3-g656bb64515bd)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.01-3-g656bb64515bd) initialized Starting run at 06:41:53 UTC on 2024-01-10. Successfully read inputs file ... Castro git describe: 24.01-5-g92138399c AMReX git describe: 24.01-3-g656bb6451 Microphysics git describe: 24.01-9-ga4d7ab4d reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013369578 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.371364819 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.357640217 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.347387363 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.359502232 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.373735062 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.344575268 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.314766413 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.314369841 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.315293695 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.316044182 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007756737 seconds Ending run at 06:41:57 UTC on 2024-01-10. Run time = 3.613741502 Run time without initialization = 3.428425771 Average number of zones advanced per microsecond: 0.765 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.612 ... 3.613 ... 3.614 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2732 2.4199 2.5045 69.30% Gravity::make_radial_gravity() 21 0.2993 0.3047 0.3184 8.81% check_for_negative_density() 10 0.01027 0.09415 0.2451 6.78% Castro::initData() 1 0.04866 0.08694 0.1232 3.41% Castro::estTimeStep() 21 0.02576 0.06854 0.1131 3.13% amrex::Copy() 193 0.07715 0.0852 0.09068 2.51% FabArray::setVal() 143 0.06686 0.07508 0.08643 2.39% FabArray::ParallelCopy_finish() 41 0.03534 0.0512 0.05935 1.64% Castro::reset_internal_energy(Fab) 1008 0.04753 0.04868 0.04998 1.38% FabArray::ParallelCopy_nowait() 41 0.04002 0.04396 0.04593 1.27% Castro::normalize_species() 62 0.04178 0.04245 0.04292 1.19% FillPatchIterator::Initialize 41 0.02859 0.03569 0.03771 1.04% StateData::FillBoundary(geom) 41 0.02946 0.03376 0.03675 1.02% Gravity::interpolate_monopole_grav() 21 0.02696 0.02931 0.03037 0.84% Castro::construct_new_gravity_source() 10 0.02272 0.02554 0.02895 0.80% Castro::initialize_do_advance() 10 0.01838 0.01993 0.02246 0.62% Castro::computeTemp() 63 0.0196 0.02015 0.02055 0.57% Castro::initialize_advance() 10 0.009355 0.0119 0.01475 0.41% FabArray::setDomainBndry() 41 0.008972 0.01186 0.01418 0.39% FabArray::Saxpy() 20 0.01261 0.01327 0.01365 0.38% MultiFab::contains_nan() 20 0.01091 0.01134 0.01208 0.33% VisMF::Write(FabArray) 2 0.008943 0.009434 0.01196 0.33% Castro::construct_old_gravity_source() 10 0.009817 0.01027 0.01053 0.29% Amr::writePlotFile() 2 0.006424 0.008735 0.009358 0.26% Castro::enforce_min_density() 62 0.007322 0.007562 0.007834 0.22% Castro::construct_new_source() 50 0.005958 0.00635 0.006606 0.18% Castro::initMFs() 1 0.006427 0.006455 0.006492 0.18% Gravity::get_new_grav_vector() 11 0.003104 0.004583 0.005959 0.16% StateData::define() 4 0.005362 0.005403 0.00543 0.15% main() 1 0.003462 0.004385 0.00522 0.14% Castro::swap_state_time_levels() 10 0.003355 0.004478 0.004649 0.13% Amr::coarseTimeStep() 10 0.0014 0.002547 0.003787 0.10% Gravity::get_old_grav_vector() 10 0.001692 0.002197 0.002487 0.07% Castro::finalize_do_advance() 10 0.001195 0.001507 0.001774 0.05% Castro::buildMetrics() 1 0.001495 0.001509 0.001523 0.04% AmrLevel::FillPatch() 41 0.0007648 0.001011 0.001456 0.04% Amr::InitAmr() 1 0.0003483 0.0003751 0.0005147 0.01% Amr::timeStep() 10 0.0001639 0.0002473 0.0004683 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002935 0.0003183 0.0003693 0.01% Castro::clean_state() 62 0.0001441 0.0001716 0.0002364 0.01% DistributionMapping::LeastUsedCPUs() 1 8.227e-06 0.0001762 0.000201 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001027 0.0001252 0.0001978 0.01% Castro::do_advance_ctu() 10 0.0001296 0.0001516 0.0001966 0.01% StateDataPhysBCFunct::() 41 9.16e-05 0.0001119 0.0001311 0.00% Castro::do_old_sources() 10 8.412e-05 0.0001013 0.0001239 0.00% Castro::enforce_consistent_e() 1 8.282e-05 9.702e-05 0.0001146 0.00% Castro::construct_old_source() 50 6.721e-05 8.183e-05 0.0001032 0.00% Amr::writeSmallPlotFile() 1 3.2e-05 5.742e-05 0.0001002 0.00% Castro::finalize_advance() 10 7.393e-05 8.917e-05 9.956e-05 0.00% Castro::Castro() 1 6.312e-05 8.301e-05 9.89e-05 0.00% FabArray::ParallelCopy() 41 7.852e-05 8.652e-05 9.825e-05 0.00% FillPatchSingleLevel 41 6.831e-05 7.442e-05 9.358e-05 0.00% Amr::FinalizeInit() 1 4.439e-06 1.436e-05 8.145e-05 0.00% FabArrayBase::getCPC() 41 4.488e-05 5.286e-05 7.714e-05 0.00% Castro::do_new_sources() 10 6.005e-05 6.732e-05 7.129e-05 0.00% Castro::subcycle_advance_ctu() 10 4.195e-05 5.1e-05 6.162e-05 0.00% Castro::apply_source_to_state() 20 4.564e-05 5.223e-05 5.811e-05 0.00% Castro::advance() 10 3.999e-05 4.946e-05 5.637e-05 0.00% Castro::construct_new_gravity() 10 3.357e-05 4.166e-05 5.587e-05 0.00% Castro::construct_old_gravity() 10 3.606e-05 4.118e-05 5.146e-05 0.00% Castro::enforce_speed_limit() 62 2.532e-05 2.82e-05 3.297e-05 0.00% Castro::expand_state() 10 2.044e-05 2.624e-05 3.246e-05 0.00% FabArrayBase::CPC::define() 2 2.232e-05 2.616e-05 3.071e-05 0.00% Castro::check_for_nan() 20 2.341e-05 2.524e-05 2.742e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.206e-05 1.891e-05 2.591e-05 0.00% Castro::post_timestep() 10 1.174e-05 1.666e-05 2.482e-05 0.00% Amr::defBaseLevel() 1 1.605e-05 2.029e-05 2.416e-05 0.00% Castro::post_init() 1 1.499e-05 1.675e-05 1.886e-05 0.00% Gravity::set_mass_offset() 10 8.692e-06 1.129e-05 1.396e-05 0.00% Gravity::swapTimeLevels() 10 8.654e-06 1.085e-05 1.22e-05 0.00% Castro::computeNewDt() 9 7.76e-06 9.318e-06 1.144e-05 0.00% Castro::computeInitialDt() 2 3.048e-06 4.537e-06 1.086e-05 0.00% Amr::initSubcycle() 1 9.882e-06 1.023e-05 1.075e-05 0.00% Castro::create_source_corrector() 10 8.03e-06 9.012e-06 1.024e-05 0.00% Castro::FluxRegCrseInit 10 5.402e-06 7.423e-06 9.585e-06 0.00% Amr::init() 1 1.706e-06 3.051e-06 8.692e-06 0.00% Castro::retry_advance_ctu() 10 6.519e-06 7.269e-06 8.236e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.644e-06 5.002e-06 5.809e-06 0.00% Amr::InitializeInit() 1 1.628e-06 2.331e-06 4.741e-06 0.00% Castro::post_regrid() 1 2.193e-06 3.005e-06 3.882e-06 0.00% Castro::FluxRegFineAdd() 10 1.994e-06 2.629e-06 3.503e-06 0.00% Amr::initialInit() 1 1.217e-06 1.829e-06 2.952e-06 0.00% DistributionMapping::Distribute() 1 9.07e-07 1.111e-06 1.211e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.612 3.613 3.614 100.00% Amr::coarseTimeStep() 10 3.416 3.416 3.416 94.51% Amr::timeStep() 10 3.401 3.402 3.403 94.18% Castro::advance() 10 3.385 3.386 3.387 93.72% Castro::subcycle_advance_ctu() 10 3.298 3.307 3.312 91.66% Castro::do_advance_ctu() 10 3.298 3.307 3.312 91.66% Castro::construct_ctu_hydro_source() 10 2.533 2.536 2.543 70.37% Gravity::make_radial_gravity() 21 0.3167 0.3227 0.3331 9.22% check_for_negative_density() 10 0.01027 0.09415 0.2451 6.78% AmrLevel::FillPatch() 41 0.193 0.2119 0.2281 6.31% Gravity::get_new_grav_vector() 11 0.2131 0.2181 0.2208 6.11% Castro::construct_old_gravity() 10 0.186 0.191 0.201 5.56% Gravity::get_old_grav_vector() 10 0.1854 0.1903 0.2003 5.54% Castro::construct_new_gravity() 10 0.1909 0.195 0.197 5.45% FillPatchIterator::Initialize 41 0.1591 0.1769 0.1918 5.31% Castro::initialize_do_advance() 10 0.1647 0.1802 0.1907 5.28% Amr::init() 1 0.1846 0.1848 0.1848 5.11% Amr::initialInit() 1 0.1711 0.1715 0.1716 4.75% Amr::InitializeInit() 1 0.06978 0.1081 0.1444 4.00% Amr::defBaseLevel() 1 0.06978 0.1081 0.1444 4.00% FillPatchIterator::FillFromLevel0() 41 0.1122 0.1294 0.1425 3.94% FillPatchSingleLevel 41 0.1121 0.1293 0.1424 3.94% Castro::expand_state() 10 0.107 0.1219 0.1343 3.72% Castro::initData() 1 0.05286 0.09125 0.1276 3.53% Castro::clean_state() 62 0.1169 0.1184 0.1205 3.33% Castro::estTimeStep() 21 0.02576 0.06854 0.1131 3.13% FabArray::ParallelCopy() 41 0.07881 0.09533 0.1054 2.92% Amr::FinalizeInit() 1 0.02712 0.06338 0.1017 2.82% Castro::do_old_sources() 10 0.09338 0.098 0.1016 2.81% amrex::Copy() 193 0.07715 0.0852 0.09068 2.51% FabArray::setVal() 143 0.06686 0.07508 0.08643 2.39% Castro::initialize_advance() 10 0.06994 0.07515 0.08431 2.33% Castro::computeInitialDt() 2 0.002202 0.03854 0.07687 2.13% Castro::do_new_sources() 10 0.06118 0.06812 0.07605 2.10% Castro::computeTemp() 63 0.06785 0.06915 0.07087 1.96% FabArray::ParallelCopy_finish() 41 0.03534 0.0512 0.05935 1.64% Castro::reset_internal_energy(MultiFab) 63 0.04784 0.049 0.05032 1.39% Castro::reset_internal_energy(Fab) 1008 0.04753 0.04868 0.04998 1.38% FabArray::ParallelCopy_nowait() 41 0.04013 0.04404 0.04601 1.27% Castro::normalize_species() 62 0.04178 0.04245 0.04292 1.19% StateDataPhysBCFunct::() 41 0.02959 0.03387 0.03685 1.02% StateData::FillBoundary(geom) 41 0.02946 0.03376 0.03675 1.02% Castro::construct_new_source() 50 0.0292 0.03189 0.03525 0.98% Gravity::interpolate_monopole_grav() 21 0.02696 0.02931 0.03037 0.84% Castro::construct_new_gravity_source() 10 0.02272 0.02554 0.02895 0.80% Castro::finalize_do_advance() 10 0.01452 0.02185 0.0283 0.78% Castro::post_init() 1 0.02397 0.02431 0.02457 0.68% Amr::writePlotFile() 2 0.02103 0.02117 0.02138 0.59% Castro::post_timestep() 10 0.01582 0.01616 0.01662 0.46% FabArray::setDomainBndry() 41 0.008972 0.01186 0.01418 0.39% Castro::apply_source_to_state() 20 0.01267 0.01332 0.0137 0.38% FabArray::Saxpy() 20 0.01261 0.01327 0.01365 0.38% Castro::check_for_nan() 20 0.01094 0.01137 0.0121 0.33% MultiFab::contains_nan() 20 0.01091 0.01134 0.01208 0.33% VisMF::Write(FabArray) 2 0.008943 0.009434 0.01196 0.33% Castro::Castro() 1 0.01111 0.0112 0.01126 0.31% Castro::construct_old_source() 50 0.009921 0.01035 0.01061 0.29% Castro::construct_old_gravity_source() 10 0.009817 0.01027 0.01053 0.29% Castro::computeNewDt() 9 0.00966 0.009673 0.009695 0.27% Castro::enforce_min_density() 62 0.007322 0.007562 0.007834 0.22% Castro::initMFs() 1 0.006427 0.006455 0.006492 0.18% AmrLevel::AmrLevel(dm) 1 0.005384 0.005422 0.005454 0.15% StateData::define() 4 0.005362 0.005403 0.00543 0.15% Castro::swap_state_time_levels() 10 0.003355 0.004478 0.004649 0.13% Castro::finalize_advance() 10 0.002925 0.003482 0.004326 0.12% Castro::post_regrid() 1 0.001558 0.001659 0.001724 0.05% Castro::buildMetrics() 1 0.001626 0.001643 0.001661 0.05% Amr::InitAmr() 1 0.0003589 0.0003853 0.000525 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.289e-05 0.0001823 0.000208 0.01% DistributionMapping::LeastUsedCPUs() 1 8.227e-06 0.0001762 0.000201 0.01% Castro::enforce_consistent_e() 1 8.282e-05 9.702e-05 0.0001146 0.00% FabArrayBase::getCPC() 41 7.036e-05 7.901e-05 0.0001043 0.00% Amr::writeSmallPlotFile() 1 3.2e-05 5.742e-05 0.0001002 0.00% Castro::enforce_speed_limit() 62 2.532e-05 2.82e-05 3.297e-05 0.00% FabArrayBase::CPC::define() 2 2.232e-05 2.616e-05 3.071e-05 0.00% Gravity::set_mass_offset() 10 8.692e-06 1.129e-05 1.396e-05 0.00% Gravity::swapTimeLevels() 10 8.654e-06 1.085e-05 1.22e-05 0.00% Amr::initSubcycle() 1 9.882e-06 1.023e-05 1.075e-05 0.00% Castro::create_source_corrector() 10 8.03e-06 9.012e-06 1.024e-05 0.00% Castro::FluxRegCrseInit 10 5.402e-06 7.423e-06 9.585e-06 0.00% Castro::retry_advance_ctu() 10 6.519e-06 7.269e-06 8.236e-06 0.00% Castro::FluxRegFineAdd() 10 1.994e-06 2.629e-06 3.503e-06 0.00% DistributionMapping::Distribute() 1 9.07e-07 1.111e-06 1.211e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 27 B 29 B 33 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.01-3-g656bb64515bd) finalized