Initializing AMReX (24.01-3-g656bb64515bd)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.01-3-g656bb64515bd) initialized Starting run at 06:33:02 UTC on 2024-01-11. Successfully read inputs file ... Castro git describe: 24.01-8-g5da02d40d AMReX git describe: 24.01-3-g656bb6451 Microphysics git describe: 24.01-9-ga4d7ab4d reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013378186 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.362313596 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.352355483 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.33695737 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.337086212 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.341951989 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.371955764 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.3601875 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.319409521 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.31931317 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.318885785 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007497247 seconds Ending run at 06:33:05 UTC on 2024-01-11. Run time = 3.615236872 Run time without initialization = 3.433874158 Average number of zones advanced per microsecond: 0.763 Average number of zones advanced per microsecond per rank: 0.095 TinyProfiler total time across processes [min...avg...max]: 3.615 ... 3.615 ... 3.615 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3111 2.3819 2.4670 68.24% Gravity::make_radial_gravity() 21 0.2818 0.2938 0.3068 8.49% check_for_negative_density() 10 0.06142 0.1492 0.2215 6.13% Castro::initData() 1 0.05137 0.08715 0.1201 3.32% FabArray::setVal() 143 0.06726 0.08057 0.09499 2.63% Castro::estTimeStep() 21 0.02258 0.05956 0.09279 2.57% amrex::Copy() 193 0.07606 0.08082 0.08963 2.48% FabArray::ParallelCopy_finish() 41 0.0341 0.06265 0.08247 2.28% Castro::reset_internal_energy(Fab) 1008 0.04611 0.04821 0.04999 1.38% FabArray::ParallelCopy_nowait() 41 0.04017 0.04322 0.04571 1.26% Castro::normalize_species() 62 0.04137 0.0422 0.04356 1.20% FillPatchIterator::Initialize 41 0.02691 0.03506 0.04085 1.13% StateData::FillBoundary(geom) 41 0.02879 0.03143 0.03467 0.96% Gravity::interpolate_monopole_grav() 21 0.02793 0.02935 0.03025 0.84% Castro::construct_new_gravity_source() 10 0.02412 0.02511 0.02673 0.74% Castro::computeTemp() 63 0.01921 0.02083 0.02473 0.68% Castro::initialize_do_advance() 10 0.01339 0.01924 0.02361 0.65% Castro::initialize_advance() 10 0.01054 0.01258 0.01601 0.44% FabArray::Saxpy() 20 0.01184 0.01354 0.01456 0.40% FabArray::setDomainBndry() 41 0.008633 0.01042 0.01239 0.34% MultiFab::contains_nan() 20 0.01001 0.01091 0.01235 0.34% VisMF::Write(FabArray) 2 0.009066 0.009457 0.01188 0.33% Castro::construct_old_gravity_source() 10 0.008278 0.01007 0.01095 0.30% Amr::writePlotFile() 2 0.00625 0.008645 0.009162 0.25% Castro::initMFs() 1 0.006446 0.006923 0.008185 0.23% Castro::construct_new_source() 50 0.006439 0.006682 0.006943 0.19% Castro::enforce_min_density() 62 0.005868 0.006137 0.006471 0.18% StateData::define() 4 0.005306 0.005527 0.00598 0.17% main() 1 0.004862 0.005129 0.005327 0.15% Castro::swap_state_time_levels() 10 0.003328 0.004462 0.004704 0.13% Gravity::get_new_grav_vector() 11 0.002773 0.003603 0.004009 0.11% Amr::coarseTimeStep() 10 0.00103 0.001804 0.002398 0.07% Gravity::get_old_grav_vector() 10 0.001447 0.001986 0.002344 0.06% Castro::finalize_do_advance() 10 0.0007577 0.001388 0.001816 0.05% Castro::buildMetrics() 1 0.001514 0.001586 0.001754 0.05% AmrLevel::FillPatch() 41 0.0007597 0.0009348 0.001155 0.03% Amr::InitAmr() 1 0.0003493 0.0004019 0.000675 0.02% Castro::reset_internal_energy(MultiFab) 63 0.0002669 0.0003017 0.0003568 0.01% Amr::timeStep() 10 0.0001535 0.0002107 0.0003406 0.01% DistributionMapping::LeastUsedCPUs() 1 1.035e-05 0.0002801 0.0003306 0.01% Castro::clean_state() 62 0.0001322 0.0001551 0.00018 0.00% Castro::do_advance_ctu() 10 0.0001171 0.0001456 0.0001759 0.00% StateDataPhysBCFunct::() 41 9.214e-05 0.0001089 0.0001312 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001016 0.0001095 0.0001216 0.00% Castro::do_old_sources() 10 7.123e-05 8.818e-05 0.0001083 0.00% Castro::finalize_advance() 10 7.608e-05 8.823e-05 0.0001033 0.00% Amr::FinalizeInit() 1 4.077e-06 1.711e-05 0.0001027 0.00% FabArray::ParallelCopy() 41 7.628e-05 8.736e-05 0.0001026 0.00% Castro::enforce_consistent_e() 1 8.116e-05 8.969e-05 0.0001025 0.00% Castro::do_new_sources() 10 5.394e-05 6.842e-05 9.793e-05 0.00% Castro::advance() 10 3.487e-05 5.661e-05 8.758e-05 0.00% Castro::Castro() 1 5.434e-05 6.851e-05 8.508e-05 0.00% Castro::construct_old_source() 50 5.878e-05 7.061e-05 8.375e-05 0.00% FillPatchSingleLevel 41 5.649e-05 6.718e-05 8.127e-05 0.00% Castro::subcycle_advance_ctu() 10 4.277e-05 5.408e-05 7.519e-05 0.00% Castro::expand_state() 10 1.876e-05 3.13e-05 6.336e-05 0.00% FabArrayBase::getCPC() 41 3.617e-05 5.097e-05 6.175e-05 0.00% Castro::construct_old_gravity() 10 2.839e-05 4.309e-05 5.941e-05 0.00% Amr::writeSmallPlotFile() 1 3.013e-05 4.61e-05 5.726e-05 0.00% Castro::apply_source_to_state() 20 3.693e-05 4.756e-05 5.632e-05 0.00% Castro::construct_new_gravity() 10 3.067e-05 3.665e-05 5.433e-05 0.00% FabArrayBase::CPC::define() 2 2.337e-05 2.72e-05 3.947e-05 0.00% Castro::enforce_speed_limit() 62 2.402e-05 2.779e-05 3.147e-05 0.00% Castro::check_for_nan() 20 2.163e-05 2.42e-05 2.942e-05 0.00% Castro::post_timestep() 10 1.23e-05 1.637e-05 2.42e-05 0.00% Amr::defBaseLevel() 1 1.572e-05 1.838e-05 2.262e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.631e-05 1.851e-05 2.065e-05 0.00% Castro::post_init() 1 1.293e-05 1.529e-05 1.922e-05 0.00% Gravity::swapTimeLevels() 10 8.547e-06 1.206e-05 1.824e-05 0.00% Gravity::set_mass_offset() 10 8.035e-06 1.101e-05 1.381e-05 0.00% Amr::initSubcycle() 1 9.323e-06 1.009e-05 1.134e-05 0.00% Castro::computeNewDt() 9 7.524e-06 8.862e-06 1.072e-05 0.00% Castro::FluxRegCrseInit 10 5.75e-06 8.155e-06 1.047e-05 0.00% Castro::create_source_corrector() 10 7.356e-06 8.524e-06 9.87e-06 0.00% Castro::retry_advance_ctu() 10 6.4e-06 7.191e-06 7.826e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.586e-06 4.488e-06 6.449e-06 0.00% Amr::init() 1 1.834e-06 2.832e-06 5.958e-06 0.00% Amr::InitializeInit() 1 1.772e-06 3.349e-06 5.864e-06 0.00% Castro::post_regrid() 1 1.943e-06 3.463e-06 4.958e-06 0.00% Castro::computeInitialDt() 2 3.064e-06 3.708e-06 4.421e-06 0.00% Castro::FluxRegFineAdd() 10 1.877e-06 2.321e-06 2.725e-06 0.00% Amr::initialInit() 1 1.114e-06 1.683e-06 2.294e-06 0.00% DistributionMapping::Distribute() 1 9.12e-07 1.035e-06 1.167e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.615 3.615 3.615 100.00% Amr::coarseTimeStep() 10 3.421 3.421 3.421 94.63% Amr::timeStep() 10 3.408 3.409 3.41 94.32% Castro::advance() 10 3.393 3.393 3.394 93.87% Castro::subcycle_advance_ctu() 10 3.293 3.306 3.317 91.76% Castro::do_advance_ctu() 10 3.293 3.306 3.317 91.76% Castro::construct_ctu_hydro_source() 10 2.548 2.552 2.554 70.64% Gravity::make_radial_gravity() 21 0.2976 0.3106 0.3222 8.91% AmrLevel::FillPatch() 41 0.1901 0.2147 0.2356 6.52% check_for_negative_density() 10 0.06142 0.1492 0.2215 6.13% Gravity::get_new_grav_vector() 11 0.2064 0.2077 0.2086 5.77% FillPatchIterator::Initialize 41 0.1609 0.1832 0.2032 5.62% Castro::construct_old_gravity() 10 0.1787 0.1885 0.1995 5.52% Gravity::get_old_grav_vector() 10 0.1775 0.1876 0.1983 5.48% Castro::initialize_do_advance() 10 0.1592 0.1818 0.1975 5.46% Castro::construct_new_gravity() 10 0.1839 0.1846 0.1855 5.13% Amr::init() 1 0.1805 0.1808 0.1809 5.00% Amr::initialInit() 1 0.167 0.1673 0.1675 4.63% FillPatchIterator::FillFromLevel0() 41 0.1111 0.1377 0.1569 4.34% FillPatchSingleLevel 41 0.111 0.1376 0.1568 4.34% Castro::expand_state() 10 0.1071 0.1256 0.1421 3.93% Amr::InitializeInit() 1 0.07163 0.1079 0.1407 3.89% Amr::defBaseLevel() 1 0.07162 0.1079 0.1407 3.89% FabArray::ParallelCopy() 41 0.0796 0.106 0.1257 3.48% Castro::initData() 1 0.05547 0.09114 0.1243 3.44% Castro::clean_state() 62 0.1129 0.1169 0.1215 3.36% Castro::do_old_sources() 10 0.09646 0.09986 0.1023 2.83% Castro::initialize_advance() 10 0.07279 0.08414 0.09588 2.65% Amr::FinalizeInit() 1 0.02683 0.05935 0.09536 2.64% FabArray::setVal() 143 0.06726 0.08057 0.09499 2.63% Castro::estTimeStep() 21 0.02258 0.05956 0.09279 2.57% amrex::Copy() 193 0.07606 0.08082 0.08963 2.48% FabArray::ParallelCopy_finish() 41 0.0341 0.06265 0.08247 2.28% Castro::computeTemp() 63 0.0656 0.06935 0.07395 2.05% Castro::computeInitialDt() 2 0.002205 0.03487 0.07092 1.96% Castro::do_new_sources() 10 0.06216 0.06579 0.07023 1.94% Castro::reset_internal_energy(MultiFab) 63 0.04639 0.04851 0.05026 1.39% Castro::reset_internal_energy(Fab) 1008 0.04611 0.04821 0.04999 1.38% FabArray::ParallelCopy_nowait() 41 0.04026 0.04329 0.04577 1.27% Castro::normalize_species() 62 0.04137 0.0422 0.04356 1.20% StateDataPhysBCFunct::() 41 0.02889 0.03154 0.03476 0.96% StateData::FillBoundary(geom) 41 0.02879 0.03143 0.03467 0.96% Castro::construct_new_source() 50 0.03056 0.03179 0.03364 0.93% Gravity::interpolate_monopole_grav() 21 0.02793 0.02935 0.03025 0.84% Castro::construct_new_gravity_source() 10 0.02412 0.02511 0.02673 0.74% Castro::post_init() 1 0.02378 0.02398 0.02413 0.67% Castro::finalize_do_advance() 10 0.012 0.01699 0.02182 0.60% Amr::writePlotFile() 2 0.02092 0.02107 0.02131 0.59% Castro::post_timestep() 10 0.01515 0.01559 0.01595 0.44% Castro::apply_source_to_state() 20 0.01187 0.01358 0.01461 0.40% FabArray::Saxpy() 20 0.01184 0.01354 0.01456 0.40% FabArray::setDomainBndry() 41 0.008633 0.01042 0.01239 0.34% Castro::check_for_nan() 20 0.01004 0.01093 0.01237 0.34% MultiFab::contains_nan() 20 0.01001 0.01091 0.01235 0.34% VisMF::Write(FabArray) 2 0.009066 0.009457 0.01188 0.33% Castro::Castro() 1 0.0105 0.01095 0.01186 0.33% Castro::construct_old_source() 50 0.008341 0.01014 0.01103 0.31% Castro::construct_old_gravity_source() 10 0.008278 0.01007 0.01095 0.30% Castro::computeNewDt() 9 0.009092 0.0091 0.009109 0.25% Castro::initMFs() 1 0.006446 0.006923 0.008185 0.23% Castro::enforce_min_density() 62 0.005868 0.006137 0.006471 0.18% AmrLevel::AmrLevel(dm) 1 0.005324 0.005545 0.006 0.17% StateData::define() 4 0.005306 0.005527 0.00598 0.17% Castro::swap_state_time_levels() 10 0.003328 0.004462 0.004704 0.13% Castro::finalize_advance() 10 0.003071 0.003283 0.00349 0.10% Castro::buildMetrics() 1 0.001633 0.001719 0.001909 0.05% Castro::post_regrid() 1 0.001551 0.001623 0.001709 0.05% Amr::InitAmr() 1 0.00036 0.000412 0.0006847 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.586e-05 0.0002856 0.0003382 0.01% DistributionMapping::LeastUsedCPUs() 1 1.035e-05 0.0002801 0.0003306 0.01% Castro::enforce_consistent_e() 1 8.116e-05 8.969e-05 0.0001025 0.00% FabArrayBase::getCPC() 41 5.954e-05 7.816e-05 8.922e-05 0.00% Amr::writeSmallPlotFile() 1 3.013e-05 4.61e-05 5.726e-05 0.00% FabArrayBase::CPC::define() 2 2.337e-05 2.72e-05 3.947e-05 0.00% Castro::enforce_speed_limit() 62 2.402e-05 2.779e-05 3.147e-05 0.00% Gravity::swapTimeLevels() 10 8.547e-06 1.206e-05 1.824e-05 0.00% Gravity::set_mass_offset() 10 8.035e-06 1.101e-05 1.381e-05 0.00% Amr::initSubcycle() 1 9.323e-06 1.009e-05 1.134e-05 0.00% Castro::FluxRegCrseInit 10 5.75e-06 8.155e-06 1.047e-05 0.00% Castro::create_source_corrector() 10 7.356e-06 8.524e-06 9.87e-06 0.00% Castro::retry_advance_ctu() 10 6.4e-06 7.191e-06 7.826e-06 0.00% Castro::FluxRegFineAdd() 10 1.877e-06 2.321e-06 2.725e-06 0.00% DistributionMapping::Distribute() 1 9.12e-07 1.035e-06 1.167e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 27 B 32 B 36 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.01-3-g656bb64515bd) finalized