Initializing AMReX (24.01-5-g8692f601b428)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.01-5-g8692f601b428) initialized Starting run at 06:34:09 UTC on 2024-01-12. Successfully read inputs file ... Castro git describe: 24.01-11-g44d0e551d AMReX git describe: 24.01-5-g8692f601b Microphysics git describe: 24.01-9-ga4d7ab4d reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016739906 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.356455797 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.345079067 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.328497691 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.326355494 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.326735466 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.360547907 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.317987996 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.310058024 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.30989785 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.309838226 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007471742 seconds Ending run at 06:34:12 UTC on 2024-01-12. Run time = 3.499898477 Run time without initialization = 3.304617958 Average number of zones advanced per microsecond: 0.793 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.499 ... 3.499 ... 3.5 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3057 2.3693 2.3934 68.38% Gravity::make_radial_gravity() 21 0.2953 0.3056 0.3205 9.16% check_for_negative_density() 10 0.03957 0.06373 0.1311 3.75% Castro::initData() 1 0.05698 0.09412 0.1193 3.41% FabArray::ParallelCopy_finish() 41 0.03731 0.05945 0.09689 2.77% amrex::Copy() 193 0.0642 0.07835 0.09279 2.65% Castro::estTimeStep() 21 0.02307 0.05164 0.08547 2.44% FabArray::setVal() 143 0.06262 0.07084 0.07746 2.21% Castro::reset_internal_energy(Fab) 1008 0.04601 0.04761 0.04891 1.40% FabArray::ParallelCopy_nowait() 41 0.03365 0.04027 0.04294 1.23% Castro::normalize_species() 62 0.04146 0.042 0.04275 1.22% StateData::FillBoundary(geom) 41 0.02921 0.03184 0.03563 1.02% FillPatchIterator::Initialize 41 0.02707 0.03194 0.03484 1.00% Gravity::interpolate_monopole_grav() 21 0.02868 0.02957 0.0305 0.87% Castro::construct_new_gravity_source() 10 0.0218 0.02417 0.02637 0.75% Castro::computeTemp() 63 0.01879 0.01967 0.02035 0.58% Castro::initialize_do_advance() 10 0.01199 0.0169 0.01858 0.53% Castro::initialize_advance() 10 0.008845 0.01227 0.01548 0.44% FabArray::Saxpy() 20 0.009987 0.01257 0.01364 0.39% VisMF::Write(FabArray) 2 0.008922 0.009621 0.01301 0.37% MultiFab::contains_nan() 20 0.009522 0.01067 0.01161 0.33% Amr::writePlotFile() 2 0.008779 0.01052 0.01159 0.33% FabArray::setDomainBndry() 41 0.006553 0.009092 0.01034 0.30% Castro::construct_old_gravity_source() 10 0.006384 0.009322 0.01021 0.29% Castro::initMFs() 1 0.006266 0.007432 0.0101 0.29% StateData::define() 4 0.005232 0.006029 0.007978 0.23% Castro::construct_new_source() 50 0.005544 0.006327 0.006753 0.19% Castro::enforce_min_density() 62 0.005673 0.006029 0.00644 0.18% main() 1 0.003725 0.004426 0.004988 0.14% Castro::swap_state_time_levels() 10 0.003143 0.004242 0.004895 0.14% Gravity::get_new_grav_vector() 11 0.00279 0.003607 0.004327 0.12% Castro::buildMetrics() 1 0.00147 0.001715 0.002307 0.07% Gravity::get_old_grav_vector() 10 0.001567 0.001896 0.002236 0.06% Amr::coarseTimeStep() 10 0.0009062 0.001627 0.002097 0.06% Castro::finalize_do_advance() 10 0.0005838 0.001131 0.001438 0.04% AmrLevel::FillPatch() 41 0.0008427 0.0009436 0.001045 0.03% Amr::InitAmr() 1 0.0003522 0.0004481 0.0006306 0.02% Amr::timeStep() 10 0.0001522 0.0002017 0.0003393 0.01% DistributionMapping::LeastUsedCPUs() 1 7.771e-06 0.0002092 0.0003082 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002736 0.000289 0.0002982 0.01% Castro::do_advance_ctu() 10 0.0001115 0.0001364 0.0001816 0.01% Castro::clean_state() 62 0.0001355 0.0001454 0.000155 0.00% Castro::enforce_consistent_e() 1 7.921e-05 9.911e-05 0.0001348 0.00% StateDataPhysBCFunct::() 41 8.852e-05 0.0001083 0.0001308 0.00% Castro::finalize_advance() 10 7.878e-05 9.98e-05 0.0001188 0.00% FillPatchIterator::FillFromLevel0() 41 9.361e-05 0.0001059 0.0001181 0.00% Castro::do_old_sources() 10 6.486e-05 8.813e-05 0.0001077 0.00% FabArray::ParallelCopy() 41 7.423e-05 8.541e-05 9.934e-05 0.00% Castro::Castro() 1 5.944e-05 7.124e-05 9.676e-05 0.00% Castro::do_new_sources() 10 5.224e-05 6.858e-05 8.684e-05 0.00% Castro::construct_old_source() 50 4.558e-05 7.026e-05 8.4e-05 0.00% FillPatchSingleLevel 41 6.132e-05 6.875e-05 8.01e-05 0.00% Amr::FinalizeInit() 1 3.825e-06 1.351e-05 7.111e-05 0.00% FabArrayBase::getCPC() 41 4e-05 5.132e-05 6.606e-05 0.00% Castro::apply_source_to_state() 20 3.662e-05 4.623e-05 6.236e-05 0.00% Amr::writeSmallPlotFile() 1 3.029e-05 4.496e-05 6.047e-05 0.00% Castro::advance() 10 3.539e-05 4.517e-05 5.277e-05 0.00% Castro::construct_old_gravity() 10 3.298e-05 3.722e-05 5.145e-05 0.00% Castro::subcycle_advance_ctu() 10 4.113e-05 4.648e-05 5.114e-05 0.00% Castro::construct_new_gravity() 10 3.169e-05 3.59e-05 4.369e-05 0.00% Castro::enforce_speed_limit() 62 2.463e-05 2.974e-05 4.188e-05 0.00% Amr::defBaseLevel() 1 1.813e-05 2.464e-05 3.271e-05 0.00% FabArrayBase::CPC::define() 2 2.149e-05 2.637e-05 2.997e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.807e-05 2.174e-05 2.91e-05 0.00% Castro::expand_state() 10 2.148e-05 2.528e-05 2.881e-05 0.00% Castro::check_for_nan() 20 2.019e-05 2.389e-05 2.853e-05 0.00% Castro::post_timestep() 10 1.151e-05 1.434e-05 2.137e-05 0.00% Castro::post_init() 1 1.344e-05 1.644e-05 2.036e-05 0.00% Amr::initSubcycle() 1 9.574e-06 1.191e-05 1.841e-05 0.00% Gravity::swapTimeLevels() 10 7.079e-06 1.01e-05 1.275e-05 0.00% Gravity::set_mass_offset() 10 8.699e-06 1.02e-05 1.263e-05 0.00% Castro::create_source_corrector() 10 6.228e-06 9.105e-06 1.091e-05 0.00% Castro::computeNewDt() 9 7.368e-06 8.092e-06 9.949e-06 0.00% Castro::FluxRegCrseInit 10 5.53e-06 7.882e-06 9.142e-06 0.00% Castro::retry_advance_ctu() 10 6.513e-06 7.451e-06 8.629e-06 0.00% Amr::initialInit() 1 1.471e-06 2.535e-06 8.229e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.799e-06 5.138e-06 6.403e-06 0.00% Amr::InitializeInit() 1 1.785e-06 2.464e-06 5.594e-06 0.00% Castro::computeInitialDt() 2 3.634e-06 4.116e-06 4.487e-06 0.00% Castro::post_regrid() 1 1.993e-06 3.182e-06 4.013e-06 0.00% Castro::FluxRegFineAdd() 10 2.026e-06 2.399e-06 2.922e-06 0.00% Amr::init() 1 1.944e-06 2.408e-06 2.86e-06 0.00% DistributionMapping::Distribute() 1 8.76e-07 1.084e-06 1.299e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.499 3.499 3.5 100.00% Amr::coarseTimeStep() 10 3.292 3.292 3.292 94.07% Amr::timeStep() 10 3.28 3.28 3.281 93.74% Castro::advance() 10 3.264 3.265 3.265 93.29% Castro::subcycle_advance_ctu() 10 3.183 3.187 3.196 91.32% Castro::do_advance_ctu() 10 3.183 3.187 3.196 91.32% Castro::construct_ctu_hydro_source() 10 2.449 2.453 2.457 70.19% Gravity::make_radial_gravity() 21 0.3101 0.321 0.3338 9.54% AmrLevel::FillPatch() 41 0.1784 0.2024 0.2223 6.35% Gravity::get_new_grav_vector() 11 0.2158 0.2177 0.219 6.26% Castro::construct_old_gravity() 10 0.1815 0.1908 0.2008 5.74% Gravity::get_old_grav_vector() 10 0.181 0.1902 0.2003 5.72% Amr::init() 1 0.1944 0.1947 0.1948 5.56% FillPatchIterator::Initialize 41 0.1501 0.173 0.194 5.54% Castro::construct_new_gravity() 10 0.1814 0.1822 0.1831 5.23% Amr::initialInit() 1 0.1777 0.1795 0.1803 5.15% Castro::initialize_do_advance() 10 0.1527 0.1609 0.1697 4.85% FillPatchIterator::FillFromLevel0() 41 0.1116 0.132 0.1604 4.58% FillPatchSingleLevel 41 0.1115 0.1319 0.1603 4.58% Amr::InitializeInit() 1 0.07739 0.1158 0.1392 3.98% Amr::defBaseLevel() 1 0.07738 0.1158 0.1392 3.98% check_for_negative_density() 10 0.03957 0.06373 0.1311 3.75% FabArray::ParallelCopy() 41 0.07966 0.09989 0.1307 3.74% Castro::initData() 1 0.06034 0.09825 0.1233 3.52% Castro::clean_state() 62 0.1121 0.1147 0.1172 3.35% Castro::expand_state() 10 0.09731 0.107 0.115 3.29% Castro::do_old_sources() 10 0.0909 0.09994 0.1091 3.12% Amr::FinalizeInit() 1 0.04067 0.06375 0.1003 2.86% FabArray::ParallelCopy_finish() 41 0.03731 0.05945 0.09689 2.77% amrex::Copy() 193 0.0642 0.07835 0.09279 2.65% Castro::estTimeStep() 21 0.02307 0.05164 0.08547 2.44% Castro::initialize_advance() 10 0.06457 0.07416 0.07766 2.22% FabArray::setVal() 143 0.06262 0.07084 0.07746 2.21% Castro::computeTemp() 63 0.06509 0.06757 0.06922 1.98% Castro::do_new_sources() 10 0.05972 0.06353 0.06847 1.96% Castro::computeInitialDt() 2 0.00298 0.02653 0.06482 1.85% Castro::reset_internal_energy(MultiFab) 63 0.0463 0.0479 0.0492 1.41% Castro::reset_internal_energy(Fab) 1008 0.04601 0.04761 0.04891 1.40% FabArray::ParallelCopy_nowait() 41 0.03375 0.04035 0.04301 1.23% Castro::normalize_species() 62 0.04146 0.042 0.04275 1.22% Castro::post_init() 1 0.03513 0.03662 0.03737 1.07% StateDataPhysBCFunct::() 41 0.02933 0.03194 0.03575 1.02% StateData::FillBoundary(geom) 41 0.02921 0.03184 0.03563 1.02% Castro::construct_new_source() 50 0.02735 0.0305 0.03311 0.95% Gravity::interpolate_monopole_grav() 21 0.02868 0.02957 0.0305 0.87% Castro::construct_new_gravity_source() 10 0.0218 0.02417 0.02637 0.75% Amr::writePlotFile() 2 0.02166 0.02267 0.02445 0.70% Castro::finalize_do_advance() 10 0.01215 0.01724 0.02087 0.60% Castro::post_timestep() 10 0.01534 0.01555 0.01574 0.45% Castro::Castro() 1 0.01002 0.01124 0.01419 0.41% Castro::apply_source_to_state() 20 0.01002 0.01262 0.01369 0.39% FabArray::Saxpy() 20 0.009987 0.01257 0.01364 0.39% VisMF::Write(FabArray) 2 0.008922 0.009621 0.01301 0.37% Castro::check_for_nan() 20 0.009547 0.0107 0.01164 0.33% MultiFab::contains_nan() 20 0.009522 0.01067 0.01161 0.33% FabArray::setDomainBndry() 41 0.006553 0.009092 0.01034 0.30% Castro::construct_old_source() 50 0.00643 0.009393 0.01029 0.29% Castro::construct_old_gravity_source() 10 0.006384 0.009322 0.01021 0.29% Castro::initMFs() 1 0.006266 0.007432 0.0101 0.29% Castro::computeNewDt() 9 0.008997 0.009001 0.009007 0.26% AmrLevel::AmrLevel(dm) 1 0.005251 0.006051 0.008005 0.23% StateData::define() 4 0.005232 0.006029 0.007978 0.23% Castro::enforce_min_density() 62 0.005673 0.006029 0.00644 0.18% Castro::swap_state_time_levels() 10 0.003143 0.004242 0.004895 0.14% Castro::finalize_advance() 10 0.003108 0.003348 0.003523 0.10% Castro::post_regrid() 1 0.001487 0.001883 0.002901 0.08% Castro::buildMetrics() 1 0.001584 0.001863 0.002515 0.07% Amr::InitAmr() 1 0.0003618 0.00046 0.000649 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.306e-05 0.0002154 0.000315 0.01% DistributionMapping::LeastUsedCPUs() 1 7.771e-06 0.0002092 0.0003082 0.01% Castro::enforce_consistent_e() 1 7.921e-05 9.911e-05 0.0001348 0.00% FabArrayBase::getCPC() 41 6.751e-05 7.77e-05 9.437e-05 0.00% Amr::writeSmallPlotFile() 1 3.029e-05 4.496e-05 6.047e-05 0.00% Castro::enforce_speed_limit() 62 2.463e-05 2.974e-05 4.188e-05 0.00% FabArrayBase::CPC::define() 2 2.149e-05 2.637e-05 2.997e-05 0.00% Amr::initSubcycle() 1 9.574e-06 1.191e-05 1.841e-05 0.00% Gravity::swapTimeLevels() 10 7.079e-06 1.01e-05 1.275e-05 0.00% Gravity::set_mass_offset() 10 8.699e-06 1.02e-05 1.263e-05 0.00% Castro::create_source_corrector() 10 6.228e-06 9.105e-06 1.091e-05 0.00% Castro::FluxRegCrseInit 10 5.53e-06 7.882e-06 9.142e-06 0.00% Castro::retry_advance_ctu() 10 6.513e-06 7.451e-06 8.629e-06 0.00% Castro::FluxRegFineAdd() 10 2.026e-06 2.399e-06 2.922e-06 0.00% DistributionMapping::Distribute() 1 8.76e-07 1.084e-06 1.299e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 38 B 55 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.01-5-g8692f601b428) finalized