Initializing AMReX (24.01-7-g255d30f387cf)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.01-7-g255d30f387cf) initialized Starting run at 06:41:37 UTC on 2024-01-15. Successfully read inputs file ... Castro git describe: 24.01-11-g44d0e551d AMReX git describe: 24.01-7-g255d30f38 Microphysics git describe: 24.01-9-ga4d7ab4d reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.012691358 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.355505204 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.349282305 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.327475127 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.325794696 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.327358894 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.359853577 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.317880038 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.312667641 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.311327498 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.309506262 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007575353 seconds Ending run at 06:41:40 UTC on 2024-01-15. Run time = 3.50481357 Run time without initialization = 3.30956805 Average number of zones advanced per microsecond: 0.792 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.504 ... 3.504 ... 3.505 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3055 2.3691 2.4189 69.02% Gravity::make_radial_gravity() 21 0.2804 0.2889 0.3032 8.65% check_for_negative_density() 10 0.01897 0.07309 0.1377 3.93% Castro::initData() 1 0.04709 0.08834 0.1295 3.69% Castro::estTimeStep() 21 0.02964 0.07269 0.1176 3.36% FabArray::ParallelCopy_finish() 41 0.03305 0.05981 0.1065 3.04% amrex::Copy() 193 0.06389 0.0809 0.09682 2.76% FabArray::setVal() 143 0.05677 0.06908 0.07721 2.20% Castro::reset_internal_energy(Fab) 1008 0.0456 0.04737 0.04893 1.40% Castro::normalize_species() 62 0.04121 0.04157 0.04247 1.21% FabArray::ParallelCopy_nowait() 41 0.03442 0.04018 0.042 1.20% FillPatchIterator::Initialize 41 0.0259 0.032 0.03933 1.12% StateData::FillBoundary(geom) 41 0.02887 0.03155 0.03318 0.95% Gravity::interpolate_monopole_grav() 21 0.02699 0.02875 0.02965 0.85% Castro::construct_new_gravity_source() 10 0.02201 0.02403 0.02657 0.76% Castro::computeTemp() 63 0.01861 0.01952 0.01996 0.57% Castro::initialize_do_advance() 10 0.01113 0.01663 0.0177 0.50% Castro::initialize_advance() 10 0.005653 0.01143 0.01491 0.43% FabArray::Saxpy() 20 0.01021 0.01247 0.0138 0.39% MultiFab::contains_nan() 20 0.01076 0.01143 0.01228 0.35% FabArray::setDomainBndry() 41 0.006292 0.009085 0.01165 0.33% VisMF::Write(FabArray) 2 0.008164 0.009179 0.01156 0.33% Amr::writePlotFile() 2 0.006204 0.008512 0.01043 0.30% Castro::initMFs() 1 0.00637 0.007517 0.01023 0.29% Castro::construct_old_gravity_source() 10 0.006489 0.00929 0.0101 0.29% StateData::define() 4 0.00528 0.006066 0.008015 0.23% Castro::enforce_min_density() 62 0.007077 0.007372 0.007693 0.22% Castro::construct_new_source() 50 0.005768 0.006399 0.006698 0.19% main() 1 0.00375 0.004238 0.004656 0.13% Castro::swap_state_time_levels() 10 0.003141 0.004129 0.00447 0.13% Gravity::get_new_grav_vector() 11 0.002786 0.003508 0.003912 0.11% Castro::buildMetrics() 1 0.001494 0.001735 0.002307 0.07% Gravity::get_old_grav_vector() 10 0.001665 0.001951 0.002306 0.07% Amr::coarseTimeStep() 10 0.0007794 0.001644 0.002292 0.07% Castro::finalize_do_advance() 10 0.0005766 0.001032 0.001253 0.04% AmrLevel::FillPatch() 41 0.0007361 0.0008901 0.001027 0.03% Amr::InitAmr() 1 0.0003703 0.0004707 0.0006964 0.02% DistributionMapping::LeastUsedCPUs() 1 6.487e-06 0.0002544 0.0003597 0.01% Amr::timeStep() 10 0.0001481 0.0002134 0.0003574 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002695 0.0002896 0.0003273 0.01% Castro::do_advance_ctu() 10 0.0001182 0.0001478 0.0001905 0.01% Castro::clean_state() 62 0.0001452 0.0001566 0.0001702 0.00% StateDataPhysBCFunct::() 41 8.28e-05 0.0001056 0.0001262 0.00% FillPatchIterator::FillFromLevel0() 41 9.511e-05 0.0001093 0.0001217 0.00% Castro::finalize_advance() 10 7.999e-05 9.872e-05 0.0001187 0.00% Castro::do_old_sources() 10 7.054e-05 8.837e-05 0.0001048 0.00% Castro::do_new_sources() 10 4.812e-05 7.086e-05 0.0001001 0.00% Amr::writeSmallPlotFile() 1 4.158e-05 6.466e-05 9.513e-05 0.00% Castro::enforce_consistent_e() 1 7.549e-05 8.47e-05 9.337e-05 0.00% FabArray::ParallelCopy() 41 6.938e-05 7.915e-05 9.002e-05 0.00% Castro::Castro() 1 5.422e-05 6.906e-05 8.918e-05 0.00% Castro::construct_old_source() 50 5.944e-05 6.896e-05 8.075e-05 0.00% Amr::FinalizeInit() 1 3.955e-06 1.433e-05 7.614e-05 0.00% FillPatchSingleLevel 41 5.932e-05 6.697e-05 7.525e-05 0.00% FabArrayBase::getCPC() 41 3.714e-05 5.334e-05 7.3e-05 0.00% Castro::apply_source_to_state() 20 4.25e-05 5.164e-05 6.896e-05 0.00% Castro::subcycle_advance_ctu() 10 3.626e-05 4.929e-05 5.987e-05 0.00% Castro::advance() 10 3.928e-05 4.714e-05 5.919e-05 0.00% Castro::construct_new_gravity() 10 2.824e-05 3.706e-05 5.763e-05 0.00% Castro::construct_old_gravity() 10 3.029e-05 3.516e-05 4.257e-05 0.00% AmrLevel::AmrLevel(dm) 1 2.084e-05 2.713e-05 3.742e-05 0.00% Castro::enforce_speed_limit() 62 2.569e-05 2.895e-05 3.269e-05 0.00% Amr::defBaseLevel() 1 1.584e-05 2.306e-05 2.772e-05 0.00% FabArrayBase::CPC::define() 2 2.241e-05 2.47e-05 2.758e-05 0.00% Castro::expand_state() 10 1.768e-05 2.363e-05 2.738e-05 0.00% Castro::check_for_nan() 20 1.883e-05 2.341e-05 2.577e-05 0.00% Castro::computeNewDt() 9 7.51e-06 1.028e-05 2.344e-05 0.00% Castro::post_timestep() 10 1.06e-05 1.441e-05 2.284e-05 0.00% Amr::initSubcycle() 1 1.011e-05 1.246e-05 1.821e-05 0.00% Castro::post_init() 1 1.365e-05 1.492e-05 1.699e-05 0.00% Castro::FluxRegCrseInit 10 6.049e-06 8.521e-06 1.399e-05 0.00% Gravity::set_mass_offset() 10 8.082e-06 1.055e-05 1.377e-05 0.00% Gravity::swapTimeLevels() 10 6.489e-06 1.066e-05 1.324e-05 0.00% Castro::create_source_corrector() 10 7.021e-06 8.203e-06 9.47e-06 0.00% Castro::retry_advance_ctu() 10 6.231e-06 7.214e-06 8.475e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.641e-06 4.635e-06 6.249e-06 0.00% Amr::InitializeInit() 1 1.836e-06 2.413e-06 4.705e-06 0.00% Castro::computeInitialDt() 2 3.065e-06 3.649e-06 4.383e-06 0.00% Castro::post_regrid() 1 2.271e-06 3.347e-06 4.372e-06 0.00% Amr::init() 1 2.235e-06 2.507e-06 3.685e-06 0.00% Castro::FluxRegFineAdd() 10 1.892e-06 2.113e-06 2.64e-06 0.00% Amr::initialInit() 1 1.26e-06 1.642e-06 2.501e-06 0.00% DistributionMapping::Distribute() 1 8.69e-07 1.103e-06 1.542e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.504 3.504 3.505 100.00% Amr::coarseTimeStep() 10 3.297 3.297 3.297 94.08% Amr::timeStep() 10 3.285 3.285 3.286 93.76% Castro::advance() 10 3.269 3.269 3.27 93.29% Castro::subcycle_advance_ctu() 10 3.19 3.194 3.209 91.57% Castro::do_advance_ctu() 10 3.19 3.194 3.209 91.57% Castro::construct_ctu_hydro_source() 10 2.459 2.463 2.466 70.36% Gravity::make_radial_gravity() 21 0.297 0.3053 0.3161 9.02% AmrLevel::FillPatch() 41 0.18 0.2042 0.2291 6.54% FillPatchIterator::Initialize 41 0.1506 0.1731 0.205 5.85% Gravity::get_new_grav_vector() 11 0.2021 0.2032 0.2046 5.84% Castro::construct_old_gravity() 10 0.181 0.188 0.1973 5.63% Gravity::get_old_grav_vector() 10 0.1803 0.1875 0.1967 5.61% Amr::init() 1 0.1944 0.1946 0.1947 5.56% Amr::initialInit() 1 0.1814 0.1819 0.1822 5.20% Castro::construct_new_gravity() 10 0.1803 0.1809 0.1816 5.18% FillPatchIterator::FillFromLevel0() 41 0.1082 0.132 0.1728 4.93% FillPatchSingleLevel 41 0.1081 0.1319 0.1727 4.93% Castro::initialize_do_advance() 10 0.1537 0.1613 0.1674 4.78% Amr::InitializeInit() 1 0.06703 0.1098 0.1556 4.44% Amr::defBaseLevel() 1 0.06703 0.1098 0.1556 4.44% FabArray::ParallelCopy() 41 0.07523 0.1002 0.1411 4.03% check_for_negative_density() 10 0.01897 0.07309 0.1377 3.93% Castro::initData() 1 0.05106 0.09212 0.1332 3.80% Castro::expand_state() 10 0.09845 0.1075 0.1204 3.43% Castro::estTimeStep() 21 0.02964 0.07269 0.1176 3.36% Castro::clean_state() 62 0.1127 0.1154 0.1175 3.35% Amr::FinalizeInit() 1 0.02605 0.07206 0.1151 3.28% Castro::do_old_sources() 10 0.09331 0.1016 0.1077 3.07% FabArray::ParallelCopy_finish() 41 0.03305 0.05981 0.1065 3.04% amrex::Copy() 193 0.06389 0.0809 0.09682 2.76% Castro::computeInitialDt() 2 0.002146 0.04812 0.09104 2.60% FabArray::setVal() 143 0.05677 0.06908 0.07721 2.20% Castro::initialize_advance() 10 0.05608 0.07186 0.07644 2.18% Castro::computeTemp() 63 0.0645 0.06717 0.06911 1.97% Castro::do_new_sources() 10 0.06047 0.0635 0.06847 1.95% Castro::reset_internal_energy(MultiFab) 63 0.04589 0.04766 0.0492 1.40% Castro::reset_internal_energy(Fab) 1008 0.0456 0.04737 0.04893 1.40% Castro::normalize_species() 62 0.04121 0.04157 0.04247 1.21% FabArray::ParallelCopy_nowait() 41 0.0345 0.04026 0.04208 1.20% StateDataPhysBCFunct::() 41 0.029 0.03166 0.03328 0.95% Castro::construct_new_source() 50 0.02777 0.03043 0.03326 0.95% StateData::FillBoundary(geom) 41 0.02887 0.03155 0.03318 0.95% Gravity::interpolate_monopole_grav() 21 0.02699 0.02875 0.02965 0.85% Castro::construct_new_gravity_source() 10 0.02201 0.02403 0.02657 0.76% Castro::post_init() 1 0.02329 0.02346 0.02374 0.68% Amr::writePlotFile() 2 0.02017 0.02037 0.02059 0.59% Castro::finalize_do_advance() 10 0.01151 0.01644 0.01986 0.57% Castro::post_timestep() 10 0.01558 0.01594 0.01654 0.47% Castro::Castro() 1 0.01018 0.01135 0.01432 0.41% Castro::apply_source_to_state() 20 0.01026 0.01252 0.01386 0.40% FabArray::Saxpy() 20 0.01021 0.01247 0.0138 0.39% Castro::check_for_nan() 20 0.01078 0.01146 0.0123 0.35% MultiFab::contains_nan() 20 0.01076 0.01143 0.01228 0.35% FabArray::setDomainBndry() 41 0.006292 0.009085 0.01165 0.33% VisMF::Write(FabArray) 2 0.008164 0.009179 0.01156 0.33% Castro::initMFs() 1 0.00637 0.007517 0.01023 0.29% Castro::construct_old_source() 50 0.006552 0.009359 0.01018 0.29% Castro::construct_old_gravity_source() 10 0.006489 0.00929 0.0101 0.29% Castro::computeNewDt() 9 0.009143 0.009179 0.009204 0.26% AmrLevel::AmrLevel(dm) 1 0.005306 0.006093 0.008047 0.23% StateData::define() 4 0.00528 0.006066 0.008015 0.23% Castro::enforce_min_density() 62 0.007077 0.007372 0.007693 0.22% Castro::swap_state_time_levels() 10 0.003141 0.004129 0.00447 0.13% Castro::finalize_advance() 10 0.003093 0.003341 0.003596 0.10% Castro::buildMetrics() 1 0.001613 0.001879 0.002509 0.07% Castro::post_regrid() 1 0.001523 0.001591 0.001673 0.05% Amr::InitAmr() 1 0.0003806 0.0004831 0.0007142 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.197e-05 0.0002601 0.0003666 0.01% DistributionMapping::LeastUsedCPUs() 1 6.487e-06 0.0002544 0.0003597 0.01% FabArrayBase::getCPC() 41 6.013e-05 7.804e-05 9.965e-05 0.00% Amr::writeSmallPlotFile() 1 4.158e-05 6.466e-05 9.513e-05 0.00% Castro::enforce_consistent_e() 1 7.549e-05 8.47e-05 9.337e-05 0.00% Castro::enforce_speed_limit() 62 2.569e-05 2.895e-05 3.269e-05 0.00% FabArrayBase::CPC::define() 2 2.241e-05 2.47e-05 2.758e-05 0.00% Amr::initSubcycle() 1 1.011e-05 1.246e-05 1.821e-05 0.00% Castro::FluxRegCrseInit 10 6.049e-06 8.521e-06 1.399e-05 0.00% Gravity::set_mass_offset() 10 8.082e-06 1.055e-05 1.377e-05 0.00% Gravity::swapTimeLevels() 10 6.489e-06 1.066e-05 1.324e-05 0.00% Castro::create_source_corrector() 10 7.021e-06 8.203e-06 9.47e-06 0.00% Castro::retry_advance_ctu() 10 6.231e-06 7.214e-06 8.475e-06 0.00% Castro::FluxRegFineAdd() 10 1.892e-06 2.113e-06 2.64e-06 0.00% DistributionMapping::Distribute() 1 8.69e-07 1.103e-06 1.542e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 33 B 44 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.01-7-g255d30f387cf) finalized