Initializing AMReX (24.01-9-g03f59365ab29)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.01-9-g03f59365ab29) initialized Starting run at 06:43:01 UTC on 2024-01-16. Successfully read inputs file ... Castro git describe: 24.01-11-g44d0e551d AMReX git describe: 24.01-9-g03f59365a Microphysics git describe: 24.01-9-ga4d7ab4d reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014136729 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.35990817 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.349625987 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.333030547 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.335833933 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.335031378 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.371700528 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.316069698 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.311029732 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.31194069 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.312634819 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007486896 seconds Ending run at 06:43:04 UTC on 2024-01-16. Run time = 3.53874001 Run time without initialization = 3.349503416 Average number of zones advanced per microsecond: 0.783 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.538 ... 3.538 ... 3.539 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3509 2.3775 2.4414 68.99% Gravity::make_radial_gravity() 21 0.2804 0.3075 0.326 9.21% Castro::initData() 1 0.05071 0.08637 0.1254 3.54% check_for_negative_density() 10 0.008898 0.07618 0.1057 2.99% amrex::Copy() 193 0.06885 0.08282 0.1039 2.94% Castro::estTimeStep() 21 0.02232 0.06802 0.102 2.88% FabArray::setVal() 143 0.06849 0.07372 0.08227 2.32% FabArray::ParallelCopy_finish() 41 0.04005 0.05166 0.07445 2.10% Castro::reset_internal_energy(Fab) 1008 0.04645 0.04765 0.04971 1.40% FabArray::ParallelCopy_nowait() 41 0.03413 0.04144 0.04406 1.25% Castro::normalize_species() 62 0.04129 0.04229 0.04304 1.22% StateData::FillBoundary(geom) 41 0.03054 0.03306 0.03943 1.11% FillPatchIterator::Initialize 41 0.02807 0.03381 0.03622 1.02% Gravity::interpolate_monopole_grav() 21 0.02773 0.02912 0.03019 0.85% Castro::construct_new_gravity_source() 10 0.02126 0.02417 0.02589 0.73% Castro::computeTemp() 63 0.0194 0.01986 0.02093 0.59% Castro::initialize_do_advance() 10 0.01267 0.01728 0.01864 0.53% MultiFab::contains_nan() 20 0.01097 0.01306 0.01646 0.47% Castro::initialize_advance() 10 0.01056 0.01324 0.01614 0.46% FabArray::Saxpy() 20 0.01024 0.01248 0.01401 0.40% FabArray::setDomainBndry() 41 0.006621 0.0102 0.01309 0.37% VisMF::Write(FabArray) 2 0.008989 0.009655 0.01268 0.36% Castro::construct_old_gravity_source() 10 0.00647 0.009341 0.01047 0.30% Amr::writePlotFile() 2 0.006259 0.009306 0.01 0.28% Castro::initMFs() 1 0.006505 0.006945 0.008129 0.23% Castro::enforce_min_density() 62 0.007105 0.007346 0.007607 0.21% Castro::construct_new_source() 50 0.005847 0.006341 0.00657 0.19% StateData::define() 4 0.005329 0.005642 0.006217 0.18% main() 1 0.003637 0.004189 0.00455 0.13% Castro::swap_state_time_levels() 10 0.003186 0.004325 0.004511 0.13% Gravity::get_new_grav_vector() 11 0.002915 0.003678 0.004005 0.11% Gravity::get_old_grav_vector() 10 0.001508 0.002047 0.002863 0.08% Amr::coarseTimeStep() 10 0.001083 0.001768 0.002303 0.07% Castro::buildMetrics() 1 0.001534 0.001598 0.001784 0.05% Castro::finalize_do_advance() 10 0.000526 0.001095 0.00137 0.04% AmrLevel::FillPatch() 41 0.0007288 0.000911 0.001021 0.03% Amr::InitAmr() 1 0.0003409 0.000385 0.000561 0.02% Amr::timeStep() 10 0.0001744 0.0002104 0.0003234 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002724 0.0002848 0.0003093 0.01% DistributionMapping::LeastUsedCPUs() 1 8.554e-06 0.000181 0.0002198 0.01% Castro::clean_state() 62 0.0001352 0.0001576 0.000201 0.01% Castro::do_advance_ctu() 10 0.0001216 0.0001501 0.0001925 0.01% StateDataPhysBCFunct::() 41 9.499e-05 0.0001319 0.0001791 0.01% FillPatchIterator::FillFromLevel0() 41 9.464e-05 0.0001166 0.0001485 0.00% Castro::finalize_advance() 10 8.528e-05 9.794e-05 0.0001268 0.00% Castro::do_old_sources() 10 7.747e-05 9.221e-05 0.0001045 0.00% FabArray::ParallelCopy() 41 7.249e-05 8.415e-05 0.0001025 0.00% Castro::enforce_consistent_e() 1 7.744e-05 8.598e-05 9.838e-05 0.00% Amr::FinalizeInit() 1 4.067e-06 1.674e-05 9.487e-05 0.00% Castro::Castro() 1 5.603e-05 6.718e-05 9.396e-05 0.00% Castro::construct_old_source() 50 5.005e-05 7.27e-05 8.836e-05 0.00% Castro::do_new_sources() 10 5.452e-05 6.534e-05 8.252e-05 0.00% FillPatchSingleLevel 41 6.321e-05 7.181e-05 7.752e-05 0.00% Castro::construct_old_gravity() 10 2.95e-05 4.498e-05 7.579e-05 0.00% FabArrayBase::getCPC() 41 4.396e-05 5.197e-05 7.232e-05 0.00% Amr::writeSmallPlotFile() 1 3.043e-05 4.978e-05 6.167e-05 0.00% Castro::apply_source_to_state() 20 3.476e-05 4.596e-05 5.624e-05 0.00% Castro::subcycle_advance_ctu() 10 4.231e-05 4.927e-05 5.422e-05 0.00% Castro::advance() 10 3.681e-05 4.867e-05 5.255e-05 0.00% Castro::construct_new_gravity() 10 2.82e-05 3.561e-05 4.331e-05 0.00% Castro::expand_state() 10 2.074e-05 2.7e-05 4.226e-05 0.00% Castro::enforce_speed_limit() 62 2.653e-05 2.843e-05 3.267e-05 0.00% FabArrayBase::CPC::define() 2 2.098e-05 2.544e-05 3.053e-05 0.00% Castro::check_for_nan() 20 2.136e-05 2.385e-05 2.575e-05 0.00% Amr::defBaseLevel() 1 1.783e-05 1.955e-05 2.439e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.663e-05 1.908e-05 2.17e-05 0.00% Castro::post_init() 1 1.544e-05 1.733e-05 2.066e-05 0.00% Gravity::set_mass_offset() 10 9.379e-06 1.255e-05 1.789e-05 0.00% Gravity::swapTimeLevels() 10 7.375e-06 1.117e-05 1.475e-05 0.00% Castro::post_timestep() 10 1.212e-05 1.351e-05 1.455e-05 0.00% Amr::initSubcycle() 1 9.638e-06 1.063e-05 1.177e-05 0.00% Castro::computeNewDt() 9 7.648e-06 8.673e-06 1.108e-05 0.00% Castro::create_source_corrector() 10 8.211e-06 9.608e-06 1.099e-05 0.00% Castro::FluxRegCrseInit 10 6.507e-06 8.09e-06 9.119e-06 0.00% Castro::retry_advance_ctu() 10 6.218e-06 7.228e-06 8.152e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.612e-06 4.753e-06 7.383e-06 0.00% Amr::init() 1 2.085e-06 3.125e-06 6.954e-06 0.00% Amr::InitializeInit() 1 1.763e-06 2.845e-06 5.65e-06 0.00% Castro::post_regrid() 1 2.093e-06 3.534e-06 5.247e-06 0.00% Castro::computeInitialDt() 2 3.036e-06 3.774e-06 4.492e-06 0.00% Castro::FluxRegFineAdd() 10 2.033e-06 2.511e-06 3.055e-06 0.00% Amr::initialInit() 1 1.706e-06 1.978e-06 2.389e-06 0.00% DistributionMapping::Distribute() 1 8.55e-07 1.013e-06 1.152e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.538 3.538 3.539 100.00% Amr::coarseTimeStep() 10 3.338 3.338 3.338 94.31% Amr::timeStep() 10 3.325 3.325 3.326 93.99% Castro::advance() 10 3.309 3.309 3.31 93.52% Castro::subcycle_advance_ctu() 10 3.224 3.228 3.231 91.29% Castro::do_advance_ctu() 10 3.224 3.228 3.231 91.29% Castro::construct_ctu_hydro_source() 10 2.471 2.475 2.478 70.04% Gravity::make_radial_gravity() 21 0.2961 0.324 0.3404 9.62% AmrLevel::FillPatch() 41 0.1966 0.2053 0.2196 6.21% Castro::construct_old_gravity() 10 0.1759 0.2013 0.2159 6.10% Gravity::get_old_grav_vector() 10 0.1748 0.2005 0.2152 6.08% Gravity::get_new_grav_vector() 11 0.2059 0.2078 0.2085 5.89% Castro::initialize_do_advance() 10 0.1558 0.172 0.1941 5.48% Amr::init() 1 0.1885 0.1887 0.1887 5.33% Castro::construct_new_gravity() 10 0.1832 0.1842 0.1849 5.22% FillPatchIterator::Initialize 41 0.1604 0.1707 0.1798 5.08% Amr::initialInit() 1 0.1742 0.1744 0.1745 4.93% Amr::InitializeInit() 1 0.07148 0.1072 0.1472 4.16% Amr::defBaseLevel() 1 0.07147 0.1072 0.1472 4.16% FillPatchIterator::FillFromLevel0() 41 0.1152 0.1266 0.1411 3.99% FillPatchSingleLevel 41 0.1151 0.1265 0.1409 3.98% Castro::expand_state() 10 0.106 0.1157 0.1342 3.79% Castro::initData() 1 0.05439 0.09032 0.1289 3.64% Castro::clean_state() 62 0.1146 0.1167 0.1196 3.38% FabArray::ParallelCopy() 41 0.08198 0.09326 0.1088 3.07% check_for_negative_density() 10 0.008898 0.07618 0.1057 2.99% amrex::Copy() 193 0.06885 0.08282 0.1039 2.94% Amr::FinalizeInit() 1 0.02736 0.06722 0.1027 2.90% Castro::estTimeStep() 21 0.02232 0.06802 0.102 2.88% Castro::do_old_sources() 10 0.093 0.09784 0.1009 2.85% FabArray::setVal() 143 0.06849 0.07372 0.08227 2.32% Castro::initialize_advance() 10 0.07539 0.07766 0.08165 2.31% Castro::computeInitialDt() 2 0.002355 0.04236 0.07788 2.20% FabArray::ParallelCopy_finish() 41 0.04005 0.05166 0.07445 2.10% Castro::computeTemp() 63 0.06619 0.06779 0.07092 2.00% Castro::do_new_sources() 10 0.06036 0.06369 0.06874 1.94% Castro::reset_internal_energy(MultiFab) 63 0.04673 0.04793 0.04999 1.41% Castro::reset_internal_energy(Fab) 1008 0.04645 0.04765 0.04971 1.40% FabArray::ParallelCopy_nowait() 41 0.03423 0.04152 0.04413 1.25% Castro::normalize_species() 62 0.04129 0.04229 0.04304 1.22% StateDataPhysBCFunct::() 41 0.03072 0.0332 0.03953 1.12% StateData::FillBoundary(geom) 41 0.03054 0.03306 0.03943 1.11% Castro::construct_new_source() 50 0.0271 0.03051 0.03241 0.92% Gravity::interpolate_monopole_grav() 21 0.02773 0.02912 0.03019 0.85% Castro::construct_new_gravity_source() 10 0.02126 0.02417 0.02589 0.73% Castro::post_init() 1 0.0244 0.02461 0.02484 0.70% Amr::writePlotFile() 2 0.0217 0.02184 0.02195 0.62% Castro::finalize_do_advance() 10 0.01159 0.01774 0.02181 0.62% Castro::check_for_nan() 20 0.011 0.01308 0.01648 0.47% Castro::post_timestep() 10 0.01557 0.01599 0.01648 0.47% MultiFab::contains_nan() 20 0.01097 0.01306 0.01646 0.47% Castro::apply_source_to_state() 20 0.01029 0.01253 0.01406 0.40% FabArray::Saxpy() 20 0.01024 0.01248 0.01401 0.40% FabArray::setDomainBndry() 41 0.006621 0.0102 0.01309 0.37% VisMF::Write(FabArray) 2 0.008989 0.009655 0.01268 0.36% Castro::Castro() 1 0.01062 0.01098 0.01183 0.33% Castro::construct_old_source() 50 0.006534 0.009413 0.01056 0.30% Castro::construct_old_gravity_source() 10 0.00647 0.009341 0.01047 0.30% Castro::computeNewDt() 9 0.009012 0.009025 0.009029 0.26% Castro::initMFs() 1 0.006505 0.006945 0.008129 0.23% Castro::enforce_min_density() 62 0.007105 0.007346 0.007607 0.21% AmrLevel::AmrLevel(dm) 1 0.005349 0.005661 0.006235 0.18% StateData::define() 4 0.005329 0.005642 0.006217 0.18% Castro::swap_state_time_levels() 10 0.003186 0.004325 0.004511 0.13% Castro::finalize_advance() 10 0.003093 0.003328 0.003502 0.10% Castro::buildMetrics() 1 0.001652 0.001734 0.001941 0.05% Castro::post_regrid() 1 0.001492 0.001561 0.001679 0.05% Amr::InitAmr() 1 0.0003513 0.0003957 0.0005728 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.403e-05 0.0001868 0.0002262 0.01% DistributionMapping::LeastUsedCPUs() 1 8.554e-06 0.000181 0.0002198 0.01% FabArrayBase::getCPC() 41 6.494e-05 7.742e-05 9.853e-05 0.00% Castro::enforce_consistent_e() 1 7.744e-05 8.598e-05 9.838e-05 0.00% Amr::writeSmallPlotFile() 1 3.043e-05 4.978e-05 6.167e-05 0.00% Castro::enforce_speed_limit() 62 2.653e-05 2.843e-05 3.267e-05 0.00% FabArrayBase::CPC::define() 2 2.098e-05 2.544e-05 3.053e-05 0.00% Gravity::set_mass_offset() 10 9.379e-06 1.255e-05 1.789e-05 0.00% Gravity::swapTimeLevels() 10 7.375e-06 1.117e-05 1.475e-05 0.00% Amr::initSubcycle() 1 9.638e-06 1.063e-05 1.177e-05 0.00% Castro::create_source_corrector() 10 8.211e-06 9.608e-06 1.099e-05 0.00% Castro::FluxRegCrseInit 10 6.507e-06 8.09e-06 9.119e-06 0.00% Castro::retry_advance_ctu() 10 6.218e-06 7.228e-06 8.152e-06 0.00% Castro::FluxRegFineAdd() 10 2.033e-06 2.511e-06 3.055e-06 0.00% DistributionMapping::Distribute() 1 8.55e-07 1.013e-06 1.152e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 27 B 33 B 43 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.01-9-g03f59365ab29) finalized