Initializing AMReX (24.01-10-g9b799efb04e0)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.01-10-g9b799efb04e0) initialized Starting run at 06:34:32 UTC on 2024-01-17. Successfully read inputs file ... Castro git describe: 24.01-11-g44d0e551d AMReX git describe: 24.01-10-g9b799efb0 Microphysics git describe: 24.01-9-ga4d7ab4d reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013680083 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.364608998 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.343934431 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.336492899 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.33632371 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.336627243 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.372592804 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.314316272 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.311736722 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.311039144 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.312878452 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007622965 seconds Ending run at 06:34:35 UTC on 2024-01-17. Run time = 3.545671109 Run time without initialization = 3.353930697 Average number of zones advanced per microsecond: 0.782 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.544 ... 3.545 ... 3.546 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3093 2.3709 2.4149 68.11% Gravity::make_radial_gravity() 21 0.2913 0.2999 0.308 8.69% check_for_negative_density() 10 0.01743 0.06723 0.1317 3.72% Castro::initData() 1 0.04719 0.09222 0.1274 3.59% Castro::estTimeStep() 21 0.02584 0.0617 0.1122 3.17% FabArray::setVal() 143 0.06555 0.07772 0.09635 2.72% amrex::Copy() 193 0.07683 0.08163 0.09012 2.54% FabArray::ParallelCopy_finish() 41 0.03981 0.06812 0.08631 2.43% Castro::reset_internal_energy(Fab) 1008 0.04642 0.04923 0.05493 1.55% FabArray::ParallelCopy_nowait() 41 0.04075 0.04372 0.04687 1.32% Castro::normalize_species() 62 0.04179 0.04258 0.0444 1.25% FillPatchIterator::Initialize 41 0.02801 0.03494 0.0407 1.15% StateData::FillBoundary(geom) 41 0.02973 0.03288 0.03698 1.04% Gravity::interpolate_monopole_grav() 21 0.02779 0.02961 0.03051 0.86% Castro::construct_new_gravity_source() 10 0.02354 0.02525 0.02663 0.75% Castro::initialize_do_advance() 10 0.0175 0.02027 0.02369 0.67% Castro::computeTemp() 63 0.01935 0.02025 0.02091 0.59% Castro::initialize_advance() 10 0.01053 0.01321 0.01725 0.49% FabArray::Saxpy() 20 0.01217 0.0136 0.01473 0.42% FabArray::setDomainBndry() 41 0.007509 0.01064 0.01357 0.38% VisMF::Write(FabArray) 2 0.009009 0.009569 0.01213 0.34% MultiFab::contains_nan() 20 0.01025 0.01101 0.01183 0.33% Castro::construct_old_gravity_source() 10 0.009535 0.01025 0.01081 0.30% Castro::initMFs() 1 0.006177 0.007429 0.009707 0.27% Amr::writePlotFile() 2 0.006479 0.008682 0.009156 0.26% StateData::define() 4 0.005215 0.006203 0.008043 0.23% Castro::construct_new_source() 50 0.006328 0.006659 0.006953 0.20% Castro::enforce_min_density() 62 0.006061 0.00623 0.006482 0.18% Castro::swap_state_time_levels() 10 0.003348 0.00447 0.005039 0.14% main() 1 0.003488 0.004482 0.004957 0.14% Gravity::get_new_grav_vector() 11 0.003054 0.003668 0.004088 0.12% Gravity::get_old_grav_vector() 10 0.001721 0.00209 0.002459 0.07% Castro::buildMetrics() 1 0.001518 0.001769 0.002276 0.06% Amr::coarseTimeStep() 10 0.001192 0.001555 0.001942 0.05% Castro::finalize_do_advance() 10 0.001026 0.001392 0.001656 0.05% AmrLevel::FillPatch() 41 0.0008484 0.0009721 0.001176 0.03% Amr::InitAmr() 1 0.0003618 0.0004721 0.0008196 0.02% DistributionMapping::LeastUsedCPUs() 1 8.984e-06 0.0003954 0.0005266 0.01% Amr::timeStep() 10 0.0001579 0.0002364 0.0004707 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000283 0.0003012 0.0003434 0.01% Castro::do_advance_ctu() 10 0.0001344 0.0001475 0.0001797 0.01% Castro::clean_state() 62 0.0001483 0.0001584 0.0001766 0.00% StateDataPhysBCFunct::() 41 8.828e-05 0.0001166 0.0001419 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001046 0.0001201 0.0001396 0.00% Castro::finalize_advance() 10 7.426e-05 0.0001008 0.0001187 0.00% FabArray::ParallelCopy() 41 7.464e-05 9.153e-05 0.0001178 0.00% Castro::do_old_sources() 10 8.042e-05 9.762e-05 0.0001173 0.00% Castro::subcycle_advance_ctu() 10 4.155e-05 5.771e-05 0.0001052 0.00% Castro::advance() 10 4.344e-05 6.041e-05 0.0001038 0.00% Castro::enforce_consistent_e() 1 7.566e-05 8.737e-05 9.68e-05 0.00% Castro::do_new_sources() 10 6.098e-05 6.926e-05 8.975e-05 0.00% Amr::writeSmallPlotFile() 1 3.597e-05 5.793e-05 8.94e-05 0.00% Castro::construct_old_source() 50 5.763e-05 7.289e-05 8.701e-05 0.00% Castro::expand_state() 10 2.069e-05 3.994e-05 8.603e-05 0.00% FillPatchSingleLevel 41 6.517e-05 7.247e-05 8.064e-05 0.00% Castro::Castro() 1 5.564e-05 6.417e-05 7.95e-05 0.00% Castro::construct_old_gravity() 10 3.281e-05 5.48e-05 7.781e-05 0.00% Amr::FinalizeInit() 1 3.788e-06 1.257e-05 6.901e-05 0.00% FabArrayBase::getCPC() 41 4.381e-05 5.597e-05 6.774e-05 0.00% Castro::apply_source_to_state() 20 4.417e-05 5.032e-05 5.885e-05 0.00% Castro::construct_new_gravity() 10 3.226e-05 3.911e-05 4.786e-05 0.00% Castro::enforce_speed_limit() 62 2.751e-05 2.981e-05 3.31e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.491e-05 2.279e-05 3.215e-05 0.00% Amr::defBaseLevel() 1 1.691e-05 2.132e-05 3.002e-05 0.00% FabArrayBase::CPC::define() 2 2.145e-05 2.459e-05 2.929e-05 0.00% Castro::check_for_nan() 20 2.263e-05 2.411e-05 2.681e-05 0.00% Castro::post_timestep() 10 1.193e-05 1.567e-05 2.425e-05 0.00% Gravity::swapTimeLevels() 10 9.73e-06 1.324e-05 2.139e-05 0.00% Castro::post_init() 1 1.398e-05 1.632e-05 1.896e-05 0.00% Amr::initSubcycle() 1 9.761e-06 1.213e-05 1.736e-05 0.00% Gravity::set_mass_offset() 10 9.515e-06 1.257e-05 1.396e-05 0.00% Castro::computeNewDt() 9 7.596e-06 9.287e-06 1.13e-05 0.00% Castro::create_source_corrector() 10 7.907e-06 8.945e-06 9.724e-06 0.00% Castro::FluxRegCrseInit 10 6.198e-06 7.9e-06 9.24e-06 0.00% Castro::retry_advance_ctu() 10 6.723e-06 7.604e-06 8.696e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.634e-06 4.849e-06 6.467e-06 0.00% Amr::InitializeInit() 1 1.855e-06 2.582e-06 6.315e-06 0.00% Castro::computeInitialDt() 2 2.901e-06 3.39e-06 4.163e-06 0.00% Castro::post_regrid() 1 1.818e-06 3.045e-06 3.992e-06 0.00% Amr::init() 1 2.238e-06 2.615e-06 3.143e-06 0.00% Castro::FluxRegFineAdd() 10 1.71e-06 2.288e-06 3.102e-06 0.00% Amr::initialInit() 1 1.076e-06 1.703e-06 2.284e-06 0.00% DistributionMapping::Distribute() 1 1.042e-06 1.15e-06 1.46e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.544 3.545 3.546 100.00% Amr::coarseTimeStep() 10 3.341 3.341 3.341 94.24% Amr::timeStep() 10 3.329 3.329 3.33 93.91% Castro::advance() 10 3.313 3.313 3.314 93.46% Castro::subcycle_advance_ctu() 10 3.214 3.228 3.239 91.34% Castro::do_advance_ctu() 10 3.214 3.228 3.239 91.34% Castro::construct_ctu_hydro_source() 10 2.453 2.459 2.464 69.49% Gravity::make_radial_gravity() 21 0.3082 0.3168 0.324 9.14% AmrLevel::FillPatch() 41 0.1975 0.2229 0.2445 6.90% Gravity::get_new_grav_vector() 11 0.21 0.2114 0.2129 6.00% FillPatchIterator::Initialize 41 0.1698 0.1908 0.2118 5.97% Castro::initialize_do_advance() 10 0.1703 0.1908 0.2023 5.71% Castro::construct_old_gravity() 10 0.1867 0.1922 0.1989 5.61% Gravity::get_old_grav_vector() 10 0.1854 0.1913 0.1977 5.58% Amr::init() 1 0.1907 0.1911 0.1912 5.39% Castro::construct_new_gravity() 10 0.1846 0.1858 0.1867 5.26% Amr::initialInit() 1 0.1769 0.1776 0.1778 5.02% FillPatchIterator::FillFromLevel0() 41 0.1196 0.1452 0.163 4.60% FillPatchSingleLevel 41 0.1195 0.1451 0.1629 4.59% Amr::InitializeInit() 1 0.0667 0.1137 0.1483 4.18% Amr::defBaseLevel() 1 0.0667 0.1137 0.1483 4.18% Castro::expand_state() 10 0.1151 0.1329 0.1476 4.16% check_for_negative_density() 10 0.01743 0.06723 0.1317 3.72% Castro::initData() 1 0.05088 0.096 0.1311 3.70% FabArray::ParallelCopy() 41 0.0843 0.112 0.1303 3.68% Castro::clean_state() 62 0.1135 0.1178 0.1232 3.47% Castro::estTimeStep() 21 0.02584 0.0617 0.1122 3.17% Amr::FinalizeInit() 1 0.02948 0.06389 0.1111 3.13% Castro::do_old_sources() 10 0.09405 0.1002 0.104 2.93% FabArray::setVal() 143 0.06555 0.07772 0.09635 2.72% Castro::initialize_advance() 10 0.07106 0.08203 0.09635 2.72% amrex::Copy() 193 0.07683 0.08163 0.09012 2.54% FabArray::ParallelCopy_finish() 41 0.03981 0.06812 0.08631 2.43% Castro::computeInitialDt() 2 0.002319 0.03686 0.08402 2.37% Castro::computeTemp() 63 0.06605 0.06978 0.07598 2.14% Castro::do_new_sources() 10 0.06222 0.06621 0.07047 1.99% Castro::reset_internal_energy(MultiFab) 63 0.0467 0.04953 0.05527 1.56% Castro::reset_internal_energy(Fab) 1008 0.04642 0.04923 0.05493 1.55% FabArray::ParallelCopy_nowait() 41 0.04082 0.0438 0.04696 1.32% Castro::normalize_species() 62 0.04179 0.04258 0.0444 1.25% StateDataPhysBCFunct::() 41 0.02985 0.03299 0.03712 1.05% StateData::FillBoundary(geom) 41 0.02973 0.03288 0.03698 1.04% Castro::construct_new_source() 50 0.03005 0.03191 0.03348 0.94% Gravity::interpolate_monopole_grav() 21 0.02779 0.02961 0.03051 0.86% Castro::post_init() 1 0.02615 0.02661 0.0268 0.76% Castro::construct_new_gravity_source() 10 0.02354 0.02525 0.02663 0.75% Castro::finalize_do_advance() 10 0.01175 0.01715 0.0224 0.63% Amr::writePlotFile() 2 0.02107 0.0212 0.02157 0.61% Castro::post_timestep() 10 0.01574 0.0159 0.01634 0.46% Castro::apply_source_to_state() 20 0.01222 0.01365 0.01479 0.42% FabArray::Saxpy() 20 0.01217 0.0136 0.01473 0.42% Castro::Castro() 1 0.009385 0.01109 0.01382 0.39% FabArray::setDomainBndry() 41 0.007509 0.01064 0.01357 0.38% VisMF::Write(FabArray) 2 0.009009 0.009569 0.01213 0.34% Castro::check_for_nan() 20 0.01028 0.01103 0.01185 0.33% MultiFab::contains_nan() 20 0.01025 0.01101 0.01183 0.33% Castro::construct_old_source() 50 0.009593 0.01033 0.01088 0.31% Castro::construct_old_gravity_source() 10 0.009535 0.01025 0.01081 0.30% Castro::initMFs() 1 0.006177 0.007429 0.009707 0.27% Castro::computeNewDt() 9 0.009088 0.009099 0.009123 0.26% AmrLevel::AmrLevel(dm) 1 0.00523 0.006226 0.008075 0.23% StateData::define() 4 0.005215 0.006203 0.008043 0.23% Castro::enforce_min_density() 62 0.006061 0.00623 0.006482 0.18% Castro::swap_state_time_levels() 10 0.003348 0.00447 0.005039 0.14% Castro::finalize_advance() 10 0.003172 0.003357 0.003543 0.10% Castro::buildMetrics() 1 0.001638 0.00192 0.002489 0.07% Castro::post_regrid() 1 0.00157 0.00167 0.001916 0.05% Amr::InitAmr() 1 0.0003719 0.0004842 0.000837 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.402e-05 0.0004014 0.0005341 0.02% DistributionMapping::LeastUsedCPUs() 1 8.984e-06 0.0003954 0.0005266 0.01% FabArrayBase::getCPC() 41 6.531e-05 8.056e-05 9.703e-05 0.00% Castro::enforce_consistent_e() 1 7.566e-05 8.737e-05 9.68e-05 0.00% Amr::writeSmallPlotFile() 1 3.597e-05 5.793e-05 8.94e-05 0.00% Castro::enforce_speed_limit() 62 2.751e-05 2.981e-05 3.31e-05 0.00% FabArrayBase::CPC::define() 2 2.145e-05 2.459e-05 2.929e-05 0.00% Gravity::swapTimeLevels() 10 9.73e-06 1.324e-05 2.139e-05 0.00% Amr::initSubcycle() 1 9.761e-06 1.213e-05 1.736e-05 0.00% Gravity::set_mass_offset() 10 9.515e-06 1.257e-05 1.396e-05 0.00% Castro::create_source_corrector() 10 7.907e-06 8.945e-06 9.724e-06 0.00% Castro::FluxRegCrseInit 10 6.198e-06 7.9e-06 9.24e-06 0.00% Castro::retry_advance_ctu() 10 6.723e-06 7.604e-06 8.696e-06 0.00% Castro::FluxRegFineAdd() 10 1.71e-06 2.288e-06 3.102e-06 0.00% DistributionMapping::Distribute() 1 1.042e-06 1.15e-06 1.46e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 33 B 40 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.01-10-g9b799efb04e0) finalized