Initializing AMReX (24.01-10-g9b799efb04e0)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.01-10-g9b799efb04e0) initialized Starting run at 06:34:14 UTC on 2024-01-18. Successfully read inputs file ... Castro git describe: 24.01-11-g44d0e551d AMReX git describe: 24.01-10-g9b799efb0 Microphysics git describe: 24.01-9-ga4d7ab4d reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013224533 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.355398088 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.349982695 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.327832966 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.329541395 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.328768621 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.371552511 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.351547752 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.311101532 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.311526644 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.312312524 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007675234 seconds Ending run at 06:34:18 UTC on 2024-01-18. Run time = 3.546933228 Run time without initialization = 3.363021129 Average number of zones advanced per microsecond: 0.779 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.546 ... 3.547 ... 3.547 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3160 2.3591 2.4084 67.90% Gravity::make_radial_gravity() 21 0.302 0.3093 0.3259 9.19% check_for_negative_density() 10 0.04104 0.09305 0.1385 3.90% Castro::initData() 1 0.04723 0.08474 0.1213 3.42% Castro::estTimeStep() 21 0.02965 0.06768 0.1085 3.06% FabArray::ParallelCopy_finish() 41 0.0414 0.06807 0.105 2.96% amrex::Copy() 193 0.0657 0.08363 0.1008 2.84% FabArray::setVal() 143 0.06396 0.07156 0.07881 2.22% Castro::reset_internal_energy(Fab) 1008 0.04463 0.0477 0.04964 1.40% Castro::normalize_species() 62 0.04089 0.04181 0.04342 1.22% FabArray::ParallelCopy_nowait() 41 0.03596 0.04121 0.04319 1.22% FillPatchIterator::Initialize 41 0.02725 0.03304 0.03679 1.04% StateData::FillBoundary(geom) 41 0.02893 0.03248 0.0351 0.99% Gravity::interpolate_monopole_grav() 21 0.02743 0.03022 0.03393 0.96% Castro::construct_new_gravity_source() 10 0.02391 0.02479 0.02612 0.74% Castro::computeTemp() 63 0.01775 0.01965 0.02066 0.58% Castro::initialize_do_advance() 10 0.01261 0.0176 0.01958 0.55% Castro::initialize_advance() 10 0.007981 0.01202 0.01494 0.42% FabArray::Saxpy() 20 0.01044 0.01249 0.01408 0.40% FabArray::setDomainBndry() 41 0.006809 0.009898 0.01189 0.34% VisMF::Write(FabArray) 2 0.008883 0.009399 0.01188 0.33% MultiFab::contains_nan() 20 0.01012 0.01072 0.01157 0.33% Castro::construct_old_gravity_source() 10 0.006912 0.00941 0.01056 0.30% Amr::writePlotFile() 2 0.006359 0.00911 0.009787 0.28% Castro::initMFs() 1 0.006342 0.006625 0.008339 0.24% Castro::construct_new_source() 50 0.006008 0.006402 0.006728 0.19% Castro::enforce_min_density() 62 0.005788 0.006115 0.006418 0.18% StateData::define() 4 0.005224 0.005359 0.00595 0.17% main() 1 0.003967 0.004685 0.00501 0.14% Castro::swap_state_time_levels() 10 0.003148 0.004167 0.004483 0.13% Gravity::get_new_grav_vector() 11 0.002673 0.003587 0.003967 0.11% Amr::coarseTimeStep() 10 0.001259 0.002612 0.003773 0.11% Gravity::get_old_grav_vector() 10 0.001713 0.002162 0.002729 0.08% Castro::buildMetrics() 1 0.001479 0.001565 0.00182 0.05% Castro::finalize_do_advance() 10 0.0004823 0.001083 0.00142 0.04% AmrLevel::FillPatch() 41 0.0007844 0.0009367 0.001164 0.03% Amr::InitAmr() 1 0.0003524 0.0003787 0.0004914 0.01% Amr::timeStep() 10 0.0001468 0.000211 0.0004616 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002685 0.0002901 0.0003081 0.01% Castro::clean_state() 62 0.0001307 0.000149 0.0001829 0.01% StateDataPhysBCFunct::() 41 7.989e-05 0.0001047 0.0001681 0.00% Castro::do_advance_ctu() 10 0.0001052 0.000135 0.0001628 0.00% DistributionMapping::LeastUsedCPUs() 1 7.199e-06 0.0001219 0.0001452 0.00% FillPatchIterator::FillFromLevel0() 41 9.112e-05 0.0001035 0.0001255 0.00% Castro::do_old_sources() 10 6.751e-05 8.985e-05 0.0001079 0.00% Castro::finalize_advance() 10 7.345e-05 9.284e-05 0.0001044 0.00% FabArray::ParallelCopy() 41 7.157e-05 8.355e-05 0.000103 0.00% Castro::enforce_consistent_e() 1 8.155e-05 8.873e-05 9.669e-05 0.00% Castro::construct_old_source() 50 5.602e-05 7.206e-05 9.066e-05 0.00% Amr::FinalizeInit() 1 3.625e-06 1.506e-05 8.85e-05 0.00% Castro::Castro() 1 5.483e-05 7.293e-05 8.108e-05 0.00% FillPatchSingleLevel 41 6.089e-05 7.18e-05 7.847e-05 0.00% Castro::do_new_sources() 10 5.474e-05 6.393e-05 7.195e-05 0.00% FabArrayBase::getCPC() 41 3.918e-05 4.941e-05 6.094e-05 0.00% Castro::construct_new_gravity() 10 3.128e-05 4.11e-05 6.074e-05 0.00% Amr::writeSmallPlotFile() 1 3.142e-05 4.115e-05 5.973e-05 0.00% Castro::apply_source_to_state() 20 3.114e-05 4.415e-05 5.562e-05 0.00% Castro::advance() 10 4.26e-05 4.889e-05 5.444e-05 0.00% Castro::subcycle_advance_ctu() 10 3.517e-05 4.481e-05 5.241e-05 0.00% Castro::construct_old_gravity() 10 3.056e-05 3.683e-05 4.409e-05 0.00% Castro::expand_state() 10 1.926e-05 2.628e-05 3.389e-05 0.00% Castro::enforce_speed_limit() 62 2.379e-05 2.764e-05 3.114e-05 0.00% Amr::defBaseLevel() 1 1.488e-05 1.926e-05 3.107e-05 0.00% FabArrayBase::CPC::define() 2 2.023e-05 2.448e-05 3.026e-05 0.00% Castro::check_for_nan() 20 1.993e-05 2.272e-05 2.543e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.53e-05 2.116e-05 2.391e-05 0.00% Castro::post_init() 1 1.311e-05 1.514e-05 1.703e-05 0.00% Castro::post_timestep() 10 1.038e-05 1.332e-05 1.635e-05 0.00% Gravity::set_mass_offset() 10 8.675e-06 1.139e-05 1.442e-05 0.00% Gravity::swapTimeLevels() 10 5.195e-06 9.695e-06 1.177e-05 0.00% Amr::initSubcycle() 1 9.35e-06 1.003e-05 1.117e-05 0.00% Castro::create_source_corrector() 10 6.767e-06 8.718e-06 1.098e-05 0.00% Castro::computeNewDt() 9 7.4e-06 8.233e-06 9.365e-06 0.00% Castro::computeInitialDt() 2 2.643e-06 4.216e-06 9.349e-06 0.00% Castro::FluxRegCrseInit 10 5.943e-06 7.233e-06 8.37e-06 0.00% Castro::retry_advance_ctu() 10 6.372e-06 7.116e-06 8.191e-06 0.00% Amr::initialInit() 1 1.112e-06 2.44e-06 7.584e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.66e-06 5.533e-06 6.865e-06 0.00% Castro::post_regrid() 1 2.07e-06 3.638e-06 5.181e-06 0.00% Amr::InitializeInit() 1 1.7e-06 2.225e-06 4.509e-06 0.00% Castro::FluxRegFineAdd() 10 2.016e-06 2.386e-06 3.338e-06 0.00% Amr::init() 1 1.89e-06 2.335e-06 2.832e-06 0.00% DistributionMapping::Distribute() 1 8.64e-07 1.081e-06 1.232e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.546 3.547 3.547 100.00% Amr::coarseTimeStep() 10 3.35 3.35 3.35 94.46% Amr::timeStep() 10 3.336 3.337 3.338 94.11% Castro::advance() 10 3.32 3.321 3.321 93.63% Castro::subcycle_advance_ctu() 10 3.241 3.243 3.25 91.62% Castro::do_advance_ctu() 10 3.241 3.243 3.25 91.62% Castro::construct_ctu_hydro_source() 10 2.468 2.472 2.477 69.83% Gravity::make_radial_gravity() 21 0.3191 0.3266 0.3395 9.57% AmrLevel::FillPatch() 41 0.1938 0.2177 0.231 6.51% Castro::construct_old_gravity() 10 0.2033 0.2111 0.222 6.26% Gravity::get_old_grav_vector() 10 0.2026 0.2105 0.2214 6.24% Gravity::get_new_grav_vector() 11 0.2057 0.2082 0.2093 5.90% FillPatchIterator::Initialize 41 0.1642 0.1851 0.2061 5.81% Castro::construct_new_gravity() 10 0.1825 0.184 0.1854 5.23% Amr::init() 1 0.1833 0.1834 0.1834 5.17% Castro::initialize_do_advance() 10 0.1609 0.167 0.1733 4.89% FillPatchIterator::FillFromLevel0() 41 0.1176 0.1422 0.1719 4.85% FillPatchSingleLevel 41 0.1175 0.1421 0.1718 4.84% Amr::initialInit() 1 0.1696 0.1698 0.1701 4.80% Amr::InitializeInit() 1 0.06746 0.1052 0.142 4.00% Amr::defBaseLevel() 1 0.06745 0.1052 0.142 4.00% FabArray::ParallelCopy() 41 0.08336 0.1094 0.1412 3.98% check_for_negative_density() 10 0.04104 0.09305 0.1385 3.90% Castro::initData() 1 0.05135 0.08877 0.1252 3.53% Castro::clean_state() 62 0.1089 0.1148 0.1197 3.37% Castro::expand_state() 10 0.1061 0.1121 0.1175 3.31% Castro::do_old_sources() 10 0.09622 0.1065 0.114 3.21% Castro::estTimeStep() 21 0.02965 0.06768 0.1085 3.06% FabArray::ParallelCopy_finish() 41 0.0414 0.06807 0.105 2.96% Amr::FinalizeInit() 1 0.02772 0.06462 0.1024 2.89% amrex::Copy() 193 0.0657 0.08363 0.1008 2.84% FabArray::setVal() 143 0.06396 0.07156 0.07881 2.22% Castro::computeInitialDt() 2 0.00234 0.03906 0.07684 2.17% Castro::initialize_advance() 10 0.067 0.07392 0.07624 2.15% Castro::computeTemp() 63 0.06265 0.06764 0.07058 1.99% Castro::do_new_sources() 10 0.06045 0.06364 0.06648 1.87% Castro::reset_internal_energy(MultiFab) 63 0.0449 0.04799 0.04993 1.41% Castro::reset_internal_energy(Fab) 1008 0.04463 0.0477 0.04964 1.40% Castro::normalize_species() 62 0.04089 0.04181 0.04342 1.22% FabArray::ParallelCopy_nowait() 41 0.03604 0.04128 0.04326 1.22% StateDataPhysBCFunct::() 41 0.02902 0.03259 0.03521 0.99% StateData::FillBoundary(geom) 41 0.02893 0.03248 0.0351 0.99% Gravity::interpolate_monopole_grav() 21 0.02743 0.03022 0.03393 0.96% Castro::construct_new_source() 50 0.03034 0.0312 0.03285 0.93% Castro::construct_new_gravity_source() 10 0.02391 0.02479 0.02612 0.74% Castro::post_init() 1 0.02503 0.02528 0.02558 0.72% Castro::finalize_do_advance() 10 0.01627 0.01993 0.02444 0.69% Amr::writePlotFile() 2 0.02106 0.02132 0.02161 0.61% Castro::post_timestep() 10 0.0144 0.01568 0.01689 0.48% Castro::apply_source_to_state() 20 0.01048 0.01253 0.01413 0.40% FabArray::Saxpy() 20 0.01044 0.01249 0.01408 0.40% FabArray::setDomainBndry() 41 0.006809 0.009898 0.01189 0.34% VisMF::Write(FabArray) 2 0.008883 0.009399 0.01188 0.33% Castro::Castro() 1 0.01065 0.01091 0.01182 0.33% Castro::check_for_nan() 20 0.01014 0.01074 0.01159 0.33% MultiFab::contains_nan() 20 0.01012 0.01072 0.01157 0.33% Castro::construct_old_source() 50 0.006968 0.009482 0.01064 0.30% Castro::construct_old_gravity_source() 10 0.006912 0.00941 0.01056 0.30% Castro::computeNewDt() 9 0.009772 0.009784 0.009792 0.28% Castro::initMFs() 1 0.006342 0.006625 0.008339 0.24% Castro::enforce_min_density() 62 0.005788 0.006115 0.006418 0.18% AmrLevel::AmrLevel(dm) 1 0.005248 0.00538 0.005974 0.17% StateData::define() 4 0.005224 0.005359 0.00595 0.17% Castro::swap_state_time_levels() 10 0.003148 0.004167 0.004483 0.13% Castro::finalize_advance() 10 0.003165 0.003349 0.003623 0.10% Castro::buildMetrics() 1 0.001603 0.001697 0.001963 0.06% Castro::post_regrid() 1 0.001507 0.001586 0.001631 0.05% Amr::InitAmr() 1 0.0003624 0.0003888 0.0005012 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.178e-05 0.0001286 0.0001529 0.00% DistributionMapping::LeastUsedCPUs() 1 7.199e-06 0.0001219 0.0001452 0.00% Castro::enforce_consistent_e() 1 8.155e-05 8.873e-05 9.669e-05 0.00% FabArrayBase::getCPC() 41 6.211e-05 7.389e-05 8.411e-05 0.00% Amr::writeSmallPlotFile() 1 3.142e-05 4.115e-05 5.973e-05 0.00% Castro::enforce_speed_limit() 62 2.379e-05 2.764e-05 3.114e-05 0.00% FabArrayBase::CPC::define() 2 2.023e-05 2.448e-05 3.026e-05 0.00% Gravity::set_mass_offset() 10 8.675e-06 1.139e-05 1.442e-05 0.00% Gravity::swapTimeLevels() 10 5.195e-06 9.695e-06 1.177e-05 0.00% Amr::initSubcycle() 1 9.35e-06 1.003e-05 1.117e-05 0.00% Castro::create_source_corrector() 10 6.767e-06 8.718e-06 1.098e-05 0.00% Castro::FluxRegCrseInit 10 5.943e-06 7.233e-06 8.37e-06 0.00% Castro::retry_advance_ctu() 10 6.372e-06 7.116e-06 8.191e-06 0.00% Castro::FluxRegFineAdd() 10 2.016e-06 2.386e-06 3.338e-06 0.00% DistributionMapping::Distribute() 1 8.64e-07 1.081e-06 1.232e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 27 B 29 B 35 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.01-10-g9b799efb04e0) finalized