Initializing AMReX (24.01-10-g9b799efb04e0)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.01-10-g9b799efb04e0) initialized Starting run at 06:32:55 UTC on 2024-01-19. Successfully read inputs file ... Castro git describe: 24.01-13-g77dcad4d2 AMReX git describe: 24.01-10-g9b799efb0 Microphysics git describe: 24.01-9-ga4d7ab4d reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013040353 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.370747216 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.352324648 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.335458998 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.336615334 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.337435104 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.367178849 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.309760156 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.311363994 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.311374686 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.31205309 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007492668 seconds Ending run at 06:32:59 UTC on 2024-01-19. Run time = 3.536973548 Run time without initialization = 3.35770834 Average number of zones advanced per microsecond: 0.781 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.535 ... 3.536 ... 3.537 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3050 2.3678 2.4198 68.41% Gravity::make_radial_gravity() 21 0.2984 0.3052 0.3133 8.86% check_for_negative_density() 10 0.01222 0.06979 0.1365 3.86% Castro::initData() 1 0.04845 0.08439 0.1192 3.37% Castro::estTimeStep() 21 0.02604 0.06608 0.1003 2.84% FabArray::setVal() 143 0.06565 0.07913 0.09281 2.62% amrex::Copy() 193 0.07592 0.08101 0.0889 2.51% FabArray::ParallelCopy_finish() 41 0.03827 0.0635 0.08278 2.34% Castro::reset_internal_energy(Fab) 1008 0.04495 0.04821 0.05123 1.45% FabArray::ParallelCopy_nowait() 41 0.04021 0.04258 0.0445 1.26% Castro::normalize_species() 62 0.04134 0.04276 0.04449 1.26% FillPatchIterator::Initialize 41 0.02787 0.03496 0.04062 1.15% StateData::FillBoundary(geom) 41 0.03151 0.03327 0.03745 1.06% Gravity::interpolate_monopole_grav() 21 0.02856 0.02966 0.03067 0.87% Castro::construct_new_gravity_source() 10 0.02417 0.02522 0.02684 0.76% Castro::initialize_do_advance() 10 0.01503 0.01936 0.02458 0.69% Castro::computeTemp() 63 0.01691 0.01963 0.02104 0.59% Castro::initialize_advance() 10 0.009696 0.0125 0.01667 0.47% FabArray::Saxpy() 20 0.01161 0.01347 0.01452 0.41% FabArray::setDomainBndry() 41 0.007166 0.01056 0.01347 0.38% MultiFab::contains_nan() 20 0.009766 0.01111 0.01217 0.34% VisMF::Write(FabArray) 2 0.008809 0.00932 0.01163 0.33% Castro::construct_old_gravity_source() 10 0.008996 0.01026 0.01078 0.30% Amr::writePlotFile() 2 0.006139 0.008397 0.009017 0.25% Castro::initMFs() 1 0.006198 0.006494 0.008378 0.24% Castro::construct_new_source() 50 0.00608 0.006631 0.007109 0.20% Castro::enforce_min_density() 62 0.005944 0.006229 0.006614 0.19% StateData::define() 4 0.0053 0.005412 0.006022 0.17% main() 1 0.003646 0.004621 0.005247 0.15% Amr::coarseTimeStep() 10 0.001477 0.002697 0.00499 0.14% Castro::swap_state_time_levels() 10 0.003262 0.004369 0.004551 0.13% Gravity::get_new_grav_vector() 11 0.002887 0.003439 0.003935 0.11% Gravity::get_old_grav_vector() 10 0.001573 0.001951 0.002206 0.06% Castro::buildMetrics() 1 0.001472 0.001515 0.001702 0.05% Castro::finalize_do_advance() 10 0.001022 0.001278 0.00149 0.04% AmrLevel::FillPatch() 41 0.0008039 0.0009038 0.001093 0.03% Amr::InitAmr() 1 0.000349 0.0003766 0.0004875 0.01% Amr::timeStep() 10 0.0001535 0.0002066 0.0003594 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002801 0.0002845 0.0002935 0.01% Castro::clean_state() 62 0.0001406 0.0001523 0.0001676 0.00% Castro::finalize_advance() 10 7.964e-05 9.768e-05 0.000156 0.00% Castro::do_advance_ctu() 10 0.000126 0.0001347 0.0001499 0.00% DistributionMapping::LeastUsedCPUs() 1 7.749e-06 0.0001127 0.0001324 0.00% StateDataPhysBCFunct::() 41 8.833e-05 0.0001074 0.0001299 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001001 0.0001102 0.0001293 0.00% Castro::enforce_consistent_e() 1 8.131e-05 8.975e-05 9.98e-05 0.00% Amr::FinalizeInit() 1 4.503e-06 1.683e-05 9.923e-05 0.00% Castro::do_old_sources() 10 7.292e-05 8.989e-05 9.877e-05 0.00% Castro::do_new_sources() 10 5.261e-05 6.701e-05 8.811e-05 0.00% FabArray::ParallelCopy() 41 7.847e-05 8.268e-05 8.805e-05 0.00% Castro::Castro() 1 5.448e-05 7.003e-05 8.674e-05 0.00% Castro::construct_old_source() 50 6.082e-05 7.287e-05 8.599e-05 0.00% FillPatchSingleLevel 41 6.429e-05 7.071e-05 8.472e-05 0.00% Amr::writeSmallPlotFile() 1 3.173e-05 5.571e-05 7.384e-05 0.00% FabArrayBase::getCPC() 41 4.053e-05 5.475e-05 7.147e-05 0.00% Castro::advance() 10 3.896e-05 4.853e-05 5.977e-05 0.00% Castro::subcycle_advance_ctu() 10 3.699e-05 4.974e-05 5.673e-05 0.00% Castro::apply_source_to_state() 20 3.654e-05 4.945e-05 5.607e-05 0.00% Castro::construct_new_gravity() 10 3.071e-05 3.804e-05 5.128e-05 0.00% Castro::construct_old_gravity() 10 3.17e-05 3.754e-05 4.313e-05 0.00% Castro::computeNewDt() 9 7.77e-06 1.802e-05 3.387e-05 0.00% Castro::enforce_speed_limit() 62 2.497e-05 2.75e-05 3.152e-05 0.00% FabArrayBase::CPC::define() 2 2.054e-05 2.527e-05 2.976e-05 0.00% Castro::expand_state() 10 2.392e-05 2.646e-05 2.858e-05 0.00% Amr::defBaseLevel() 1 1.666e-05 2.223e-05 2.748e-05 0.00% Castro::check_for_nan() 20 2.175e-05 2.322e-05 2.467e-05 0.00% Castro::post_timestep() 10 1.187e-05 1.542e-05 2.408e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.622e-05 1.841e-05 2.095e-05 0.00% Castro::post_init() 1 1.399e-05 1.563e-05 1.847e-05 0.00% Gravity::set_mass_offset() 10 7.767e-06 1.103e-05 1.339e-05 0.00% Gravity::swapTimeLevels() 10 8.952e-06 1.001e-05 1.252e-05 0.00% Castro::create_source_corrector() 10 7.307e-06 8.826e-06 1.137e-05 0.00% Amr::initSubcycle() 1 9.165e-06 1e-05 1.109e-05 0.00% Castro::FluxRegCrseInit 10 5.717e-06 7.657e-06 8.528e-06 0.00% Castro::retry_advance_ctu() 10 7.074e-06 7.709e-06 8.448e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.48e-06 5.909e-06 6.808e-06 0.00% Castro::computeInitialDt() 2 3.074e-06 3.982e-06 4.676e-06 0.00% Castro::post_regrid() 1 1.738e-06 3.245e-06 4.488e-06 0.00% Amr::InitializeInit() 1 1.814e-06 2.343e-06 4.435e-06 0.00% Castro::FluxRegFineAdd() 10 2.047e-06 2.401e-06 2.78e-06 0.00% Amr::init() 1 1.947e-06 2.358e-06 2.704e-06 0.00% Amr::initialInit() 1 1.477e-06 1.756e-06 2.302e-06 0.00% DistributionMapping::Distribute() 1 9.77e-07 1.036e-06 1.147e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.535 3.536 3.537 100.00% Amr::coarseTimeStep() 10 3.345 3.345 3.345 94.57% Amr::timeStep() 10 3.328 3.328 3.329 94.12% Castro::advance() 10 3.312 3.313 3.313 93.67% Castro::subcycle_advance_ctu() 10 3.214 3.228 3.24 91.60% Castro::do_advance_ctu() 10 3.214 3.228 3.24 91.60% Castro::construct_ctu_hydro_source() 10 2.454 2.458 2.463 69.63% Gravity::make_radial_gravity() 21 0.3145 0.3218 0.3303 9.34% AmrLevel::FillPatch() 41 0.1898 0.2167 0.2388 6.75% Gravity::get_new_grav_vector() 11 0.2114 0.2129 0.214 6.05% FillPatchIterator::Initialize 41 0.1597 0.1853 0.2063 5.83% Castro::construct_old_gravity() 10 0.1892 0.1951 0.2007 5.68% Gravity::get_old_grav_vector() 10 0.1886 0.1943 0.2002 5.66% Castro::initialize_do_advance() 10 0.1677 0.1837 0.1981 5.60% Castro::construct_new_gravity() 10 0.1891 0.1902 0.1907 5.39% Amr::init() 1 0.1786 0.1788 0.1788 5.05% Amr::initialInit() 1 0.1654 0.1656 0.1657 4.69% FillPatchIterator::FillFromLevel0() 41 0.115 0.1398 0.1576 4.46% FillPatchSingleLevel 41 0.1149 0.1397 0.1575 4.45% Castro::expand_state() 10 0.1081 0.1269 0.1431 4.05% Amr::InitializeInit() 1 0.0685 0.1048 0.1394 3.94% Amr::defBaseLevel() 1 0.0685 0.1048 0.1394 3.94% check_for_negative_density() 10 0.01222 0.06979 0.1365 3.86% FabArray::ParallelCopy() 41 0.08153 0.1062 0.1258 3.56% Castro::initData() 1 0.05251 0.08847 0.1232 3.48% Castro::clean_state() 62 0.1101 0.1164 0.1222 3.46% Castro::do_old_sources() 10 0.09583 0.1005 0.1037 2.93% Castro::estTimeStep() 21 0.02604 0.06608 0.1003 2.84% Amr::FinalizeInit() 1 0.02632 0.06077 0.09693 2.74% Castro::initialize_advance() 10 0.06933 0.08105 0.09459 2.67% FabArray::setVal() 143 0.06565 0.07913 0.09281 2.62% amrex::Copy() 193 0.07592 0.08101 0.0889 2.51% FabArray::ParallelCopy_finish() 41 0.03827 0.0635 0.08278 2.34% Castro::computeInitialDt() 2 0.002149 0.03666 0.07288 2.06% Castro::computeTemp() 63 0.06214 0.06813 0.07256 2.05% Castro::do_new_sources() 10 0.06143 0.06581 0.07053 1.99% Castro::reset_internal_energy(MultiFab) 63 0.04523 0.04849 0.05152 1.46% Castro::reset_internal_energy(Fab) 1008 0.04495 0.04821 0.05123 1.45% FabArray::ParallelCopy_nowait() 41 0.04029 0.04266 0.04459 1.26% Castro::normalize_species() 62 0.04134 0.04276 0.04449 1.26% StateDataPhysBCFunct::() 41 0.03163 0.03338 0.03755 1.06% StateData::FillBoundary(geom) 41 0.03151 0.03327 0.03745 1.06% Castro::construct_new_source() 50 0.03061 0.03185 0.03363 0.95% Gravity::interpolate_monopole_grav() 21 0.02856 0.02966 0.03067 0.87% Castro::construct_new_gravity_source() 10 0.02417 0.02522 0.02684 0.76% Castro::post_init() 1 0.02347 0.02364 0.0238 0.67% Castro::finalize_do_advance() 10 0.01193 0.01784 0.02304 0.65% Amr::writePlotFile() 2 0.0206 0.02072 0.02087 0.59% Castro::post_timestep() 10 0.015 0.01551 0.01586 0.45% Castro::apply_source_to_state() 20 0.01166 0.01352 0.01457 0.41% FabArray::Saxpy() 20 0.01161 0.01347 0.01452 0.41% FabArray::setDomainBndry() 41 0.007166 0.01056 0.01347 0.38% Castro::computeNewDt() 9 0.0112 0.01288 0.01341 0.38% Castro::check_for_nan() 20 0.009791 0.01113 0.0122 0.34% MultiFab::contains_nan() 20 0.009766 0.01111 0.01217 0.34% Castro::Castro() 1 0.01059 0.01078 0.01175 0.33% VisMF::Write(FabArray) 2 0.008809 0.00932 0.01163 0.33% Castro::construct_old_source() 50 0.009058 0.01033 0.01086 0.31% Castro::construct_old_gravity_source() 10 0.008996 0.01026 0.01078 0.30% Castro::initMFs() 1 0.006198 0.006494 0.008378 0.24% Castro::enforce_min_density() 62 0.005944 0.006229 0.006614 0.19% AmrLevel::AmrLevel(dm) 1 0.005318 0.00543 0.006041 0.17% StateData::define() 4 0.0053 0.005412 0.006022 0.17% Castro::swap_state_time_levels() 10 0.003262 0.004369 0.004551 0.13% Castro::finalize_advance() 10 0.003093 0.003441 0.003911 0.11% Castro::buildMetrics() 1 0.001594 0.001647 0.001862 0.05% Castro::post_regrid() 1 0.001492 0.001588 0.001639 0.05% Amr::InitAmr() 1 0.0003588 0.0003866 0.0004972 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.226e-05 0.0001197 0.0001399 0.00% DistributionMapping::LeastUsedCPUs() 1 7.749e-06 0.0001127 0.0001324 0.00% Castro::enforce_consistent_e() 1 8.131e-05 8.975e-05 9.98e-05 0.00% FabArrayBase::getCPC() 41 6.83e-05 8.003e-05 9.201e-05 0.00% Amr::writeSmallPlotFile() 1 3.173e-05 5.571e-05 7.384e-05 0.00% Castro::enforce_speed_limit() 62 2.497e-05 2.75e-05 3.152e-05 0.00% FabArrayBase::CPC::define() 2 2.054e-05 2.527e-05 2.976e-05 0.00% Gravity::set_mass_offset() 10 7.767e-06 1.103e-05 1.339e-05 0.00% Gravity::swapTimeLevels() 10 8.952e-06 1.001e-05 1.252e-05 0.00% Castro::create_source_corrector() 10 7.307e-06 8.826e-06 1.137e-05 0.00% Amr::initSubcycle() 1 9.165e-06 1e-05 1.109e-05 0.00% Castro::FluxRegCrseInit 10 5.717e-06 7.657e-06 8.528e-06 0.00% Castro::retry_advance_ctu() 10 7.074e-06 7.709e-06 8.448e-06 0.00% Castro::FluxRegFineAdd() 10 2.047e-06 2.401e-06 2.78e-06 0.00% DistributionMapping::Distribute() 1 9.77e-07 1.036e-06 1.147e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 27 B 33 B 36 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.01-10-g9b799efb04e0) finalized