Initializing AMReX (24.01-20-g10742d0e3a45)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.01-20-g10742d0e3a45) initialized Starting run at 19:13:42 UTC on 2024-01-21. Successfully read inputs file ... Castro git describe: 24.01-23-g3cb8a4997 AMReX git describe: 24.01-20-g10742d0e3 Microphysics git describe: 24.01-9-ga4d7ab4d reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.0139696 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.366665891 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.347527937 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.336951167 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.335332887 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.33683328 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.364597255 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.340036017 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.341137821 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.339379579 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.341753734 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010038332 seconds Ending run at 19:13:46 UTC on 2024-01-21. Run time = 3.653327035 Run time without initialization = 3.468325119 Average number of zones advanced per microsecond: 0.756 Average number of zones advanced per microsecond per rank: 0.094 TinyProfiler total time across processes [min...avg...max]: 3.651 ... 3.653 ... 3.653 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3577 2.4151 2.4915 68.20% Gravity::make_radial_gravity() 21 0.2906 0.3037 0.324 8.87% check_for_negative_density() 10 0.01916 0.1034 0.1652 4.52% Castro::initData() 1 0.04864 0.09502 0.1209 3.31% Castro::estTimeStep() 21 0.02583 0.05325 0.1063 2.91% amrex::Copy() 193 0.06932 0.08811 0.1016 2.78% FabArray::setVal() 143 0.07801 0.08644 0.1005 2.75% FabArray::ParallelCopy_finish() 41 0.03804 0.06242 0.09818 2.69% Castro::reset_internal_energy(Fab) 1008 0.0477 0.05055 0.05747 1.57% FabArray::ParallelCopy_nowait() 41 0.03772 0.0448 0.04659 1.28% Castro::normalize_species() 62 0.04191 0.04267 0.04399 1.20% FillPatchIterator::Initialize 41 0.02518 0.03534 0.04056 1.11% StateData::FillBoundary(geom) 41 0.02957 0.03395 0.03889 1.06% Castro::construct_new_gravity_source() 10 0.02362 0.02784 0.03154 0.86% Gravity::interpolate_monopole_grav() 21 0.02757 0.02934 0.03062 0.84% Castro::initialize_do_advance() 10 0.01059 0.02026 0.02248 0.62% Castro::computeTemp() 63 0.01977 0.02067 0.02216 0.61% FabArray::Saxpy() 20 0.0133 0.01605 0.0182 0.50% Castro::initialize_advance() 10 0.01326 0.0148 0.01648 0.45% FabArray::setDomainBndry() 41 0.005644 0.01101 0.01471 0.40% MultiFab::contains_nan() 20 0.01069 0.0121 0.0141 0.39% Castro::construct_old_gravity_source() 10 0.00708 0.01213 0.0135 0.37% VisMF::Write(FabArray) 2 0.009153 0.009822 0.01255 0.34% Amr::writePlotFile() 2 0.007877 0.01043 0.01154 0.32% Castro::initMFs() 1 0.006432 0.007555 0.0102 0.28% StateData::define() 4 0.00536 0.006188 0.00809 0.22% Castro::construct_new_source() 50 0.006617 0.007342 0.007906 0.22% main() 1 0.005167 0.006506 0.007373 0.20% Castro::enforce_min_density() 62 0.006141 0.006513 0.006938 0.19% Castro::swap_state_time_levels() 10 0.003337 0.00461 0.005401 0.15% Gravity::get_new_grav_vector() 11 0.00243 0.003796 0.004774 0.13% Gravity::get_old_grav_vector() 10 0.001387 0.00223 0.003233 0.09% Castro::buildMetrics() 1 0.001526 0.001776 0.002324 0.06% Amr::coarseTimeStep() 10 0.001118 0.001555 0.00223 0.06% Castro::finalize_do_advance() 10 0.0004919 0.001042 0.001283 0.04% AmrLevel::FillPatch() 41 0.0007976 0.0009565 0.001096 0.03% Amr::InitAmr() 1 0.0003587 0.0004601 0.0006745 0.02% Amr::timeStep() 10 0.0001313 0.0002304 0.0005093 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002905 0.0003165 0.0003796 0.01% DistributionMapping::LeastUsedCPUs() 1 6.392e-06 0.0002459 0.0003501 0.01% Castro::clean_state() 62 0.0001341 0.0001607 0.0001998 0.01% FillPatchIterator::FillFromLevel0() 41 9.524e-05 0.0001321 0.000186 0.01% Castro::do_advance_ctu() 10 0.000137 0.0001603 0.0001851 0.01% Castro::do_old_sources() 10 7.502e-05 0.0001031 0.0001523 0.00% StateDataPhysBCFunct::() 41 9.474e-05 0.0001141 0.0001477 0.00% Castro::finalize_advance() 10 7.267e-05 0.0001003 0.0001383 0.00% Castro::enforce_consistent_e() 1 7.777e-05 9.759e-05 0.0001292 0.00% Castro::construct_old_source() 50 6.152e-05 8.782e-05 0.0001188 0.00% FabArray::ParallelCopy() 41 7.935e-05 8.818e-05 0.0001042 0.00% Castro::Castro() 1 5.723e-05 7.304e-05 9.982e-05 0.00% Castro::do_new_sources() 10 5.393e-05 7.269e-05 9.704e-05 0.00% Amr::FinalizeInit() 1 3.781e-06 1.631e-05 9.483e-05 0.00% Castro::subcycle_advance_ctu() 10 4.466e-05 6.671e-05 9.276e-05 0.00% FillPatchSingleLevel 41 6.594e-05 7.674e-05 8.913e-05 0.00% Castro::advance() 10 3.814e-05 5.964e-05 8.833e-05 0.00% Castro::apply_source_to_state() 20 3.756e-05 5.333e-05 8.392e-05 0.00% FabArrayBase::getCPC() 41 3.829e-05 5.245e-05 7.235e-05 0.00% Amr::writeSmallPlotFile() 1 2.949e-05 4.971e-05 6.888e-05 0.00% Castro::construct_old_gravity() 10 3.442e-05 4.746e-05 6.152e-05 0.00% Castro::expand_state() 10 2.071e-05 3.389e-05 5.988e-05 0.00% Castro::construct_new_gravity() 10 3.458e-05 4.017e-05 5.016e-05 0.00% Castro::enforce_speed_limit() 62 2.415e-05 2.777e-05 3.623e-05 0.00% FabArrayBase::CPC::define() 2 2.295e-05 2.64e-05 3.25e-05 0.00% Castro::post_timestep() 10 1.321e-05 1.802e-05 3.018e-05 0.00% Amr::defBaseLevel() 1 1.874e-05 2.432e-05 2.991e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.413e-05 2.008e-05 2.698e-05 0.00% Castro::check_for_nan() 20 2.207e-05 2.396e-05 2.573e-05 0.00% Gravity::swapTimeLevels() 10 9.766e-06 1.425e-05 2.539e-05 0.00% Castro::post_init() 1 1.544e-05 1.717e-05 1.98e-05 0.00% Amr::initSubcycle() 1 9.478e-06 1.199e-05 1.807e-05 0.00% Gravity::set_mass_offset() 10 8.378e-06 1.115e-05 1.565e-05 0.00% Castro::create_source_corrector() 10 6.46e-06 9.531e-06 1.414e-05 0.00% Castro::computeNewDt() 9 7.319e-06 8.186e-06 9.883e-06 0.00% Amr::initialInit() 1 1.455e-06 2.922e-06 9.485e-06 0.00% Castro::retry_advance_ctu() 10 6.772e-06 7.596e-06 8.814e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.357e-06 6.28e-06 8.777e-06 0.00% Castro::FluxRegCrseInit 10 6.487e-06 7.784e-06 8.654e-06 0.00% Amr::init() 1 2.1e-06 2.937e-06 5.871e-06 0.00% Amr::InitializeInit() 1 1.883e-06 2.546e-06 4.782e-06 0.00% Castro::post_regrid() 1 1.801e-06 3.226e-06 4.582e-06 0.00% Castro::computeInitialDt() 2 2.987e-06 3.665e-06 4.418e-06 0.00% Castro::FluxRegFineAdd() 10 2.136e-06 2.481e-06 3.113e-06 0.00% DistributionMapping::Distribute() 1 1.03e-06 1.334e-06 1.522e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.651 3.653 3.653 100.00% Amr::coarseTimeStep() 10 3.451 3.451 3.451 94.46% Amr::timeStep() 10 3.438 3.439 3.44 94.15% Castro::advance() 10 3.422 3.423 3.423 93.71% Castro::subcycle_advance_ctu() 10 3.315 3.327 3.334 91.26% Castro::do_advance_ctu() 10 3.315 3.327 3.334 91.26% Castro::construct_ctu_hydro_source() 10 2.533 2.54 2.547 69.72% Gravity::make_radial_gravity() 21 0.3088 0.3221 0.3398 9.30% AmrLevel::FillPatch() 41 0.2025 0.2227 0.2431 6.65% Gravity::get_new_grav_vector() 11 0.2118 0.2134 0.2153 5.89% Castro::construct_old_gravity() 10 0.1897 0.197 0.2116 5.79% Gravity::get_old_grav_vector() 10 0.1886 0.1962 0.211 5.77% FillPatchIterator::Initialize 41 0.1712 0.188 0.2053 5.62% Castro::initialize_do_advance() 10 0.1661 0.1857 0.1976 5.41% Castro::construct_new_gravity() 10 0.1861 0.1878 0.1897 5.19% Amr::init() 1 0.1841 0.1844 0.1845 5.05% Amr::initialInit() 1 0.1701 0.1704 0.1708 4.67% FillPatchIterator::FillFromLevel0() 41 0.1221 0.1417 0.1669 4.57% FillPatchSingleLevel 41 0.122 0.1415 0.1667 4.56% check_for_negative_density() 10 0.01916 0.1034 0.1652 4.52% Amr::InitializeInit() 1 0.06848 0.1169 0.1412 3.87% Amr::defBaseLevel() 1 0.06848 0.1169 0.1412 3.87% Castro::expand_state() 10 0.1148 0.1265 0.1392 3.81% FabArray::ParallelCopy() 41 0.08298 0.1074 0.1361 3.72% Castro::clean_state() 62 0.1168 0.1199 0.1278 3.50% Castro::initData() 1 0.05236 0.09904 0.1247 3.41% Castro::do_old_sources() 10 0.1059 0.1098 0.1148 3.14% Castro::estTimeStep() 21 0.02583 0.05325 0.1063 2.91% Castro::initialize_advance() 10 0.08456 0.09198 0.1036 2.83% Amr::FinalizeInit() 1 0.0295 0.05347 0.1017 2.78% amrex::Copy() 193 0.06932 0.08811 0.1016 2.78% FabArray::setVal() 143 0.07801 0.08644 0.1005 2.75% FabArray::ParallelCopy_finish() 41 0.03804 0.06242 0.09818 2.69% Castro::computeTemp() 63 0.06778 0.07154 0.07955 2.18% Castro::do_new_sources() 10 0.06489 0.06993 0.07622 2.09% Castro::computeInitialDt() 2 0.002309 0.02649 0.07492 2.05% Castro::reset_internal_energy(MultiFab) 63 0.04801 0.05087 0.05781 1.58% Castro::reset_internal_energy(Fab) 1008 0.0477 0.05055 0.05747 1.57% FabArray::ParallelCopy_nowait() 41 0.03781 0.04488 0.04667 1.28% Castro::normalize_species() 62 0.04191 0.04267 0.04399 1.20% Castro::construct_new_source() 50 0.03024 0.03518 0.03945 1.08% StateDataPhysBCFunct::() 41 0.02969 0.03407 0.03898 1.07% StateData::FillBoundary(geom) 41 0.02957 0.03395 0.03889 1.06% Castro::construct_new_gravity_source() 10 0.02362 0.02784 0.03154 0.86% Gravity::interpolate_monopole_grav() 21 0.02757 0.02934 0.03062 0.84% Castro::post_init() 1 0.02636 0.02657 0.02697 0.74% Amr::writePlotFile() 2 0.0238 0.02406 0.02427 0.66% Castro::finalize_do_advance() 10 0.01148 0.01878 0.02354 0.64% Castro::apply_source_to_state() 20 0.01334 0.0161 0.01829 0.50% FabArray::Saxpy() 20 0.0133 0.01605 0.0182 0.50% Castro::post_timestep() 10 0.01567 0.0159 0.01617 0.44% FabArray::setDomainBndry() 41 0.005644 0.01101 0.01471 0.40% Castro::Castro() 1 0.01016 0.01142 0.01432 0.39% Castro::check_for_nan() 20 0.01071 0.01213 0.01413 0.39% MultiFab::contains_nan() 20 0.01069 0.0121 0.0141 0.39% Castro::construct_old_source() 50 0.007142 0.01222 0.01362 0.37% Castro::construct_old_gravity_source() 10 0.00708 0.01213 0.0135 0.37% VisMF::Write(FabArray) 2 0.009153 0.009822 0.01255 0.34% Castro::initMFs() 1 0.006432 0.007555 0.0102 0.28% Castro::computeNewDt() 9 0.009035 0.009042 0.009048 0.25% AmrLevel::AmrLevel(dm) 1 0.00538 0.006208 0.008117 0.22% StateData::define() 4 0.00536 0.006188 0.00809 0.22% Castro::enforce_min_density() 62 0.006141 0.006513 0.006938 0.19% Castro::swap_state_time_levels() 10 0.003337 0.00461 0.005401 0.15% Castro::finalize_advance() 10 0.003922 0.004203 0.004659 0.13% Castro::buildMetrics() 1 0.001646 0.001924 0.002532 0.07% Castro::post_regrid() 1 0.00156 0.001683 0.001965 0.05% Amr::InitAmr() 1 0.0003691 0.0004721 0.0006925 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.216e-05 0.0002535 0.0003588 0.01% DistributionMapping::LeastUsedCPUs() 1 6.392e-06 0.0002459 0.0003501 0.01% Castro::enforce_consistent_e() 1 7.777e-05 9.759e-05 0.0001292 0.00% FabArrayBase::getCPC() 41 6.33e-05 7.884e-05 9.67e-05 0.00% Amr::writeSmallPlotFile() 1 2.949e-05 4.971e-05 6.888e-05 0.00% Castro::enforce_speed_limit() 62 2.415e-05 2.777e-05 3.623e-05 0.00% FabArrayBase::CPC::define() 2 2.295e-05 2.64e-05 3.25e-05 0.00% Gravity::swapTimeLevels() 10 9.766e-06 1.425e-05 2.539e-05 0.00% Amr::initSubcycle() 1 9.478e-06 1.199e-05 1.807e-05 0.00% Gravity::set_mass_offset() 10 8.378e-06 1.115e-05 1.565e-05 0.00% Castro::create_source_corrector() 10 6.46e-06 9.531e-06 1.414e-05 0.00% Castro::retry_advance_ctu() 10 6.772e-06 7.596e-06 8.814e-06 0.00% Castro::FluxRegCrseInit 10 6.487e-06 7.784e-06 8.654e-06 0.00% Castro::FluxRegFineAdd() 10 2.136e-06 2.481e-06 3.113e-06 0.00% DistributionMapping::Distribute() 1 1.03e-06 1.334e-06 1.522e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 34 B 39 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.01-20-g10742d0e3a45) finalized