Initializing AMReX (24.01-19-g022f97ea9ebb)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.01-19-g022f97ea9ebb) initialized Starting run at 06:32:21 UTC on 2024-01-22. Successfully read inputs file ... Castro git describe: 24.01-14-g931bec9c2 AMReX git describe: 24.01-19-g022f97ea9 Microphysics git describe: 24.01-9-ga4d7ab4d reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.012730111 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.352786026 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.345278042 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.325929881 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.32717375 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.3280136 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.358202468 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.315460043 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.308225504 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.30884616 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.308235065 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007608369 seconds Ending run at 06:32:24 UTC on 2024-01-22. Run time = 3.49392774 Run time without initialization = 3.291195969 Average number of zones advanced per microsecond: 0.797 Average number of zones advanced per microsecond per rank: 0.100 TinyProfiler total time across processes [min...avg...max]: 3.494 ... 3.494 ... 3.494 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3017 2.3532 2.3867 68.31% Gravity::make_radial_gravity() 21 0.2824 0.292 0.3114 8.91% Castro::initData() 1 0.05277 0.09076 0.1364 3.90% Castro::estTimeStep() 21 0.02945 0.07708 0.119 3.41% check_for_negative_density() 10 0.02941 0.06211 0.1178 3.37% FabArray::ParallelCopy_finish() 41 0.03643 0.06164 0.1121 3.21% amrex::Copy() 193 0.06215 0.08201 0.1001 2.87% FabArray::setVal() 143 0.05374 0.06804 0.07601 2.18% Castro::reset_internal_energy(Fab) 1008 0.04656 0.04759 0.04839 1.38% FabArray::ParallelCopy_nowait() 41 0.03407 0.04123 0.04352 1.25% Castro::normalize_species() 62 0.04099 0.04143 0.04179 1.20% FillPatchIterator::Initialize 41 0.02611 0.03315 0.03671 1.05% StateData::FillBoundary(geom) 41 0.02963 0.03137 0.03436 0.98% Gravity::interpolate_monopole_grav() 21 0.02705 0.0292 0.03133 0.90% Castro::construct_new_gravity_source() 10 0.02218 0.02395 0.02542 0.73% Castro::computeTemp() 63 0.01894 0.01964 0.02012 0.58% Castro::initialize_do_advance() 10 0.01108 0.0172 0.01918 0.55% Castro::initialize_advance() 10 0.003747 0.0107 0.01451 0.42% FabArray::Saxpy() 20 0.0103 0.01265 0.0139 0.40% MultiFab::contains_nan() 20 0.0103 0.0112 0.01263 0.36% FabArray::setDomainBndry() 41 0.006431 0.01002 0.01233 0.35% VisMF::Write(FabArray) 2 0.008236 0.009167 0.0116 0.33% Amr::writePlotFile() 2 0.006219 0.008842 0.01088 0.31% Castro::initMFs() 1 0.006474 0.007516 0.01052 0.30% Castro::construct_old_gravity_source() 10 0.006536 0.009351 0.01047 0.30% StateData::define() 4 0.005299 0.005989 0.007885 0.23% Castro::enforce_min_density() 62 0.007184 0.007398 0.007714 0.22% Castro::construct_new_source() 50 0.005823 0.006421 0.006792 0.19% main() 1 0.00427 0.00446 0.004691 0.13% Castro::swap_state_time_levels() 10 0.003136 0.00421 0.004574 0.13% Gravity::get_new_grav_vector() 11 0.002745 0.003716 0.004159 0.12% Gravity::get_old_grav_vector() 10 0.001469 0.002063 0.002517 0.07% Amr::coarseTimeStep() 10 0.0009621 0.001786 0.002338 0.07% Castro::buildMetrics() 1 0.001503 0.001747 0.002336 0.07% Castro::finalize_do_advance() 10 0.0004916 0.001102 0.001413 0.04% AmrLevel::FillPatch() 41 0.0007765 0.0009223 0.001113 0.03% Amr::InitAmr() 1 0.0003511 0.0004564 0.0006767 0.02% Amr::timeStep() 10 0.000152 0.0002222 0.0004448 0.01% DistributionMapping::LeastUsedCPUs() 1 6.743e-06 0.0002565 0.0003591 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002697 0.0002961 0.000328 0.01% Castro::do_advance_ctu() 10 0.0001104 0.0001398 0.0001709 0.00% Castro::clean_state() 62 0.0001328 0.0001445 0.0001626 0.00% StateDataPhysBCFunct::() 41 8.22e-05 0.000107 0.0001439 0.00% FillPatchIterator::FillFromLevel0() 41 9.923e-05 0.0001129 0.000137 0.00% Castro::finalize_advance() 10 7.589e-05 9.1e-05 0.0001159 0.00% Castro::do_old_sources() 10 7.696e-05 8.811e-05 0.0001033 0.00% Castro::enforce_consistent_e() 1 8.8e-05 9.136e-05 9.615e-05 0.00% Castro::do_new_sources() 10 4.603e-05 6.593e-05 9.018e-05 0.00% Castro::Castro() 1 6.079e-05 7.095e-05 8.833e-05 0.00% Castro::construct_old_source() 50 5.428e-05 7.006e-05 8.674e-05 0.00% Amr::writeSmallPlotFile() 1 3.302e-05 5.102e-05 8.345e-05 0.00% FillPatchSingleLevel 41 6.389e-05 7.143e-05 8.142e-05 0.00% FabArray::ParallelCopy() 41 6.733e-05 7.445e-05 7.972e-05 0.00% FabArrayBase::getCPC() 41 3.706e-05 5.296e-05 7.585e-05 0.00% Amr::FinalizeInit() 1 4.218e-06 1.432e-05 7.319e-05 0.00% Castro::subcycle_advance_ctu() 10 3.521e-05 4.779e-05 5.911e-05 0.00% Castro::advance() 10 3.762e-05 4.483e-05 5.901e-05 0.00% Castro::apply_source_to_state() 20 3.536e-05 4.537e-05 5.755e-05 0.00% Castro::construct_old_gravity() 10 2.974e-05 3.696e-05 4.122e-05 0.00% Castro::construct_new_gravity() 10 3.002e-05 3.589e-05 3.984e-05 0.00% Castro::expand_state() 10 1.781e-05 2.699e-05 3.492e-05 0.00% Castro::enforce_speed_limit() 62 2.369e-05 2.622e-05 3.299e-05 0.00% Amr::defBaseLevel() 1 1.867e-05 2.449e-05 3.113e-05 0.00% Castro::check_for_nan() 20 2.003e-05 2.386e-05 2.958e-05 0.00% FabArrayBase::CPC::define() 2 2.177e-05 2.449e-05 2.792e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.632e-05 1.891e-05 2.535e-05 0.00% Castro::post_timestep() 10 1.223e-05 1.501e-05 1.966e-05 0.00% Amr::initSubcycle() 1 1.001e-05 1.254e-05 1.854e-05 0.00% Castro::post_init() 1 1.353e-05 1.517e-05 1.778e-05 0.00% Gravity::set_mass_offset() 10 9.196e-06 1.146e-05 1.386e-05 0.00% Gravity::swapTimeLevels() 10 5.563e-06 9.531e-06 1.214e-05 0.00% Castro::post_regrid() 1 1.695e-06 4.588e-06 9.621e-06 0.00% Castro::create_source_corrector() 10 6.948e-06 7.843e-06 9.129e-06 0.00% Castro::FluxRegCrseInit 10 6.661e-06 7.873e-06 8.883e-06 0.00% Castro::retry_advance_ctu() 10 5.579e-06 7.11e-06 8.863e-06 0.00% Castro::computeNewDt() 9 6.927e-06 7.779e-06 8.465e-06 0.00% Amr::initialInit() 1 1.749e-06 3.284e-06 7.563e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.657e-06 5.303e-06 6.677e-06 0.00% Amr::InitializeInit() 1 1.877e-06 2.473e-06 4.867e-06 0.00% Castro::computeInitialDt() 2 3.177e-06 3.893e-06 4.71e-06 0.00% Castro::FluxRegFineAdd() 10 2.119e-06 2.362e-06 2.623e-06 0.00% Amr::init() 1 2.011e-06 2.249e-06 2.519e-06 0.00% DistributionMapping::Distribute() 1 8.62e-07 1.064e-06 1.314e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.494 3.494 3.494 100.00% Amr::coarseTimeStep() 10 3.279 3.279 3.279 93.85% Amr::timeStep() 10 3.266 3.267 3.268 93.53% Castro::advance() 10 3.25 3.251 3.251 93.05% Castro::subcycle_advance_ctu() 10 3.173 3.178 3.196 91.49% Castro::do_advance_ctu() 10 3.173 3.178 3.196 91.48% Castro::construct_ctu_hydro_source() 10 2.432 2.436 2.441 69.86% Gravity::make_radial_gravity() 21 0.298 0.3085 0.3244 9.28% AmrLevel::FillPatch() 41 0.1826 0.2093 0.233 6.67% FillPatchIterator::Initialize 41 0.1545 0.1779 0.2102 6.02% Castro::construct_old_gravity() 10 0.1826 0.1924 0.2057 5.89% Gravity::get_old_grav_vector() 10 0.1819 0.1918 0.2052 5.87% Gravity::get_new_grav_vector() 11 0.2023 0.2037 0.2046 5.86% Amr::init() 1 0.2018 0.2021 0.2022 5.79% Amr::initialInit() 1 0.1888 0.1892 0.1895 5.42% Castro::construct_new_gravity() 10 0.1804 0.1812 0.1822 5.21% FillPatchIterator::FillFromLevel0() 41 0.1097 0.1347 0.1777 5.08% FillPatchSingleLevel 41 0.1096 0.1346 0.1775 5.08% Castro::initialize_do_advance() 10 0.1578 0.1661 0.1734 4.96% Amr::InitializeInit() 1 0.07349 0.1127 0.1626 4.65% Amr::defBaseLevel() 1 0.07348 0.1127 0.1626 4.65% FabArray::ParallelCopy() 41 0.07807 0.103 0.1464 4.19% Castro::initData() 1 0.05685 0.09476 0.14 4.01% Castro::expand_state() 10 0.1023 0.1116 0.1248 3.57% Castro::estTimeStep() 21 0.02945 0.07708 0.119 3.41% check_for_negative_density() 10 0.02941 0.06211 0.1178 3.37% Castro::clean_state() 62 0.1142 0.1156 0.1169 3.35% Amr::FinalizeInit() 1 0.02619 0.0765 0.1157 3.31% FabArray::ParallelCopy_finish() 41 0.03643 0.06164 0.1121 3.21% Castro::do_old_sources() 10 0.09151 0.1026 0.1095 3.13% amrex::Copy() 193 0.06215 0.08201 0.1001 2.87% Castro::computeInitialDt() 2 0.002154 0.05233 0.09148 2.62% FabArray::setVal() 143 0.05374 0.06804 0.07601 2.18% Castro::initialize_advance() 10 0.05043 0.06963 0.07433 2.13% Castro::computeTemp() 63 0.0658 0.06753 0.06861 1.96% Castro::do_new_sources() 10 0.0606 0.06349 0.06761 1.94% Castro::reset_internal_energy(MultiFab) 63 0.04685 0.04789 0.04868 1.39% Castro::reset_internal_energy(Fab) 1008 0.04656 0.04759 0.04839 1.38% FabArray::ParallelCopy_nowait() 41 0.03415 0.04131 0.04359 1.25% Castro::normalize_species() 62 0.04099 0.04143 0.04179 1.20% StateDataPhysBCFunct::() 41 0.02973 0.03148 0.03446 0.99% StateData::FillBoundary(geom) 41 0.02963 0.03137 0.03436 0.98% Castro::construct_new_source() 50 0.02801 0.03037 0.03209 0.92% Gravity::interpolate_monopole_grav() 21 0.02705 0.0292 0.03133 0.90% Castro::construct_new_gravity_source() 10 0.02218 0.02395 0.02542 0.73% Castro::post_init() 1 0.02291 0.02362 0.02385 0.68% Amr::writePlotFile() 2 0.02044 0.02064 0.02088 0.60% Castro::finalize_do_advance() 10 0.01171 0.01677 0.01977 0.57% Castro::post_timestep() 10 0.01537 0.01584 0.01667 0.48% Castro::Castro() 1 0.01045 0.01161 0.01465 0.42% Castro::apply_source_to_state() 20 0.01035 0.01269 0.01394 0.40% FabArray::Saxpy() 20 0.0103 0.01265 0.0139 0.40% Castro::check_for_nan() 20 0.01032 0.01123 0.01265 0.36% MultiFab::contains_nan() 20 0.0103 0.0112 0.01263 0.36% FabArray::setDomainBndry() 41 0.006431 0.01002 0.01233 0.35% VisMF::Write(FabArray) 2 0.008236 0.009167 0.0116 0.33% Castro::construct_old_source() 50 0.006591 0.009421 0.01054 0.30% Castro::initMFs() 1 0.006474 0.007516 0.01052 0.30% Castro::construct_old_gravity_source() 10 0.006536 0.009351 0.01047 0.30% Castro::computeNewDt() 9 0.009087 0.009091 0.009097 0.26% AmrLevel::AmrLevel(dm) 1 0.005316 0.006007 0.007909 0.23% StateData::define() 4 0.005299 0.005989 0.007885 0.23% Castro::enforce_min_density() 62 0.007184 0.007398 0.007714 0.22% Castro::swap_state_time_levels() 10 0.003136 0.00421 0.004574 0.13% Castro::finalize_advance() 10 0.003109 0.003307 0.003479 0.10% Castro::buildMetrics() 1 0.001624 0.001893 0.002537 0.07% Castro::post_regrid() 1 0.00156 0.001673 0.00213 0.06% Amr::InitAmr() 1 0.0003623 0.000469 0.0006952 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.243e-05 0.0002629 0.0003666 0.01% DistributionMapping::LeastUsedCPUs() 1 6.743e-06 0.0002565 0.0003591 0.01% FabArrayBase::getCPC() 41 6.178e-05 7.745e-05 0.0001038 0.00% Castro::enforce_consistent_e() 1 8.8e-05 9.136e-05 9.615e-05 0.00% Amr::writeSmallPlotFile() 1 3.302e-05 5.102e-05 8.345e-05 0.00% Castro::enforce_speed_limit() 62 2.369e-05 2.622e-05 3.299e-05 0.00% FabArrayBase::CPC::define() 2 2.177e-05 2.449e-05 2.792e-05 0.00% Amr::initSubcycle() 1 1.001e-05 1.254e-05 1.854e-05 0.00% Gravity::set_mass_offset() 10 9.196e-06 1.146e-05 1.386e-05 0.00% Gravity::swapTimeLevels() 10 5.563e-06 9.531e-06 1.214e-05 0.00% Castro::create_source_corrector() 10 6.948e-06 7.843e-06 9.129e-06 0.00% Castro::FluxRegCrseInit 10 6.661e-06 7.873e-06 8.883e-06 0.00% Castro::retry_advance_ctu() 10 5.579e-06 7.11e-06 8.863e-06 0.00% Castro::FluxRegFineAdd() 10 2.119e-06 2.362e-06 2.623e-06 0.00% DistributionMapping::Distribute() 1 8.62e-07 1.064e-06 1.314e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 36 B 42 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.01-19-g022f97ea9ebb) finalized