Initializing AMReX (24.01-20-g0c59bad946fd)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.01-20-g0c59bad946fd) initialized Starting run at 15:03:31 UTC on 2024-01-23. Successfully read inputs file ... Castro git describe: 24.01-18-gc63eb40bf AMReX git describe: 24.01-20-g0c59bad94 Microphysics git describe: 24.01-9-ga4d7ab4d reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013007038 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.358131265 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.352923906 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.330068988 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.329306895 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.330105707 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.360944542 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.31307013 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.307457649 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.307480181 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.307350354 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007531295 seconds Ending run at 15:03:34 UTC on 2024-01-23. Run time = 3.507199691 Run time without initialization = 3.310217445 Average number of zones advanced per microsecond: 0.792 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.506 ... 3.507 ... 3.507 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2817 2.3543 2.3809 67.88% Gravity::make_radial_gravity() 21 0.2819 0.2967 0.3077 8.77% check_for_negative_density() 10 0.03886 0.06717 0.1406 4.01% Castro::initData() 1 0.06212 0.09217 0.1305 3.72% amrex::Copy() 193 0.0751 0.0835 0.09876 2.82% Castro::estTimeStep() 21 0.0293 0.06806 0.09738 2.78% FabArray::setVal() 143 0.06785 0.07458 0.08094 2.31% FabArray::ParallelCopy_finish() 41 0.03284 0.05126 0.06758 1.93% FabArray::ParallelCopy_nowait() 41 0.03991 0.04448 0.05146 1.47% Castro::reset_internal_energy(Fab) 1008 0.04664 0.04728 0.04827 1.38% Castro::normalize_species() 62 0.04102 0.04175 0.04313 1.23% FillPatchIterator::Initialize 41 0.02729 0.03392 0.03631 1.04% StateData::FillBoundary(geom) 41 0.02858 0.03173 0.03582 1.02% Gravity::interpolate_monopole_grav() 21 0.02756 0.02884 0.0298 0.85% Castro::construct_new_gravity_source() 10 0.02402 0.02514 0.0263 0.75% Castro::computeTemp() 63 0.01923 0.01958 0.01988 0.57% Castro::initialize_do_advance() 10 0.0127 0.0172 0.01951 0.56% Castro::initialize_advance() 10 0.01067 0.01316 0.01577 0.45% FabArray::Saxpy() 20 0.01192 0.01339 0.01497 0.43% MultiFab::contains_nan() 20 0.01008 0.01156 0.01455 0.41% FabArray::setDomainBndry() 41 0.006833 0.01092 0.01288 0.37% VisMF::Write(FabArray) 2 0.008732 0.009224 0.01156 0.33% Castro::construct_old_gravity_source() 10 0.008149 0.0101 0.01094 0.31% Castro::initMFs() 1 0.006295 0.008138 0.009819 0.28% Amr::writePlotFile() 2 0.006255 0.008718 0.009361 0.27% StateData::define() 4 0.005242 0.006762 0.008081 0.23% Castro::enforce_min_density() 62 0.006957 0.007324 0.007615 0.22% Castro::construct_new_source() 50 0.006212 0.006612 0.006939 0.20% main() 1 0.003344 0.004339 0.005068 0.14% Castro::swap_state_time_levels() 10 0.00336 0.004507 0.004994 0.14% Gravity::get_new_grav_vector() 11 0.002834 0.003681 0.004036 0.12% Castro::buildMetrics() 1 0.001486 0.001906 0.002314 0.07% Gravity::get_old_grav_vector() 10 0.00161 0.002032 0.00229 0.07% Amr::coarseTimeStep() 10 0.001022 0.001588 0.002252 0.06% Castro::finalize_do_advance() 10 0.0004721 0.0009633 0.001197 0.03% AmrLevel::FillPatch() 41 0.0006742 0.0008047 0.0008976 0.03% Amr::InitAmr() 1 0.0003762 0.0005544 0.0008507 0.02% DistributionMapping::LeastUsedCPUs() 1 8.187e-06 0.0003176 0.0005172 0.01% Amr::timeStep() 10 0.0001447 0.0002191 0.000474 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002719 0.0002919 0.0003109 0.01% Castro::do_advance_ctu() 10 0.0001134 0.0001438 0.0001873 0.01% Castro::clean_state() 62 0.0001339 0.0001521 0.000168 0.00% StateDataPhysBCFunct::() 41 8.681e-05 0.0001143 0.0001519 0.00% FillPatchIterator::FillFromLevel0() 41 8.928e-05 0.0001124 0.0001336 0.00% Castro::do_old_sources() 10 6.869e-05 8.925e-05 0.0001122 0.00% Castro::finalize_advance() 10 7.477e-05 8.975e-05 0.0001071 0.00% FabArray::ParallelCopy() 41 6.876e-05 8.169e-05 0.0001057 0.00% Castro::construct_old_source() 50 5.292e-05 7.556e-05 0.0001007 0.00% Castro::enforce_consistent_e() 1 7.704e-05 8.654e-05 9.723e-05 0.00% Castro::Castro() 1 5.62e-05 6.958e-05 8.73e-05 0.00% Castro::do_new_sources() 10 5.589e-05 6.753e-05 8.259e-05 0.00% FillPatchSingleLevel 41 5.803e-05 7.069e-05 7.728e-05 0.00% Amr::writeSmallPlotFile() 1 2.919e-05 4.537e-05 7.371e-05 0.00% Amr::FinalizeInit() 1 3.71e-06 1.211e-05 6.276e-05 0.00% FabArrayBase::getCPC() 41 3.909e-05 4.978e-05 6.093e-05 0.00% Castro::subcycle_advance_ctu() 10 4.03e-05 5.087e-05 5.892e-05 0.00% Castro::expand_state() 10 2.053e-05 3.141e-05 5.538e-05 0.00% Castro::apply_source_to_state() 20 3.536e-05 4.472e-05 5.2e-05 0.00% Castro::construct_old_gravity() 10 2.943e-05 3.847e-05 4.933e-05 0.00% Castro::advance() 10 3.909e-05 4.423e-05 4.789e-05 0.00% Castro::construct_new_gravity() 10 2.996e-05 3.513e-05 4.213e-05 0.00% FabArrayBase::CPC::define() 2 2.108e-05 2.663e-05 3.717e-05 0.00% Castro::enforce_speed_limit() 62 2.418e-05 2.708e-05 2.927e-05 0.00% Castro::check_for_nan() 20 2.061e-05 2.311e-05 2.653e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.65e-05 2.098e-05 2.568e-05 0.00% Amr::defBaseLevel() 1 1.813e-05 2.149e-05 2.506e-05 0.00% Amr::initSubcycle() 1 9.516e-06 1.459e-05 1.93e-05 0.00% Castro::post_init() 1 1.305e-05 1.536e-05 1.879e-05 0.00% Castro::post_timestep() 10 1.081e-05 1.348e-05 1.589e-05 0.00% Gravity::swapTimeLevels() 10 8.402e-06 1.093e-05 1.389e-05 0.00% Castro::create_source_corrector() 10 6.654e-06 8.784e-06 1.333e-05 0.00% Gravity::set_mass_offset() 10 8.543e-06 1.042e-05 1.226e-05 0.00% Amr::init() 1 1.941e-06 3.377e-06 1.075e-05 0.00% Castro::computeNewDt() 9 6.833e-06 8.336e-06 1.016e-05 0.00% Castro::FluxRegCrseInit 10 6.637e-06 7.972e-06 9.552e-06 0.00% Castro::retry_advance_ctu() 10 6.584e-06 7.681e-06 8.843e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.061e-06 5.2e-06 6.241e-06 0.00% Amr::InitializeInit() 1 1.806e-06 2.761e-06 5.982e-06 0.00% Castro::post_regrid() 1 2.015e-06 3.312e-06 4.896e-06 0.00% Castro::computeInitialDt() 2 3.333e-06 3.758e-06 4.137e-06 0.00% Castro::FluxRegFineAdd() 10 1.69e-06 2.132e-06 2.393e-06 0.00% Amr::initialInit() 1 1.357e-06 1.594e-06 1.913e-06 0.00% DistributionMapping::Distribute() 1 9.63e-07 1.19e-06 1.454e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.506 3.507 3.507 100.00% Amr::coarseTimeStep() 10 3.298 3.298 3.298 94.03% Amr::timeStep() 10 3.285 3.286 3.286 93.70% Castro::advance() 10 3.269 3.27 3.27 93.23% Castro::subcycle_advance_ctu() 10 3.186 3.189 3.193 91.03% Castro::do_advance_ctu() 10 3.186 3.189 3.193 91.03% Castro::construct_ctu_hydro_source() 10 2.438 2.442 2.445 69.73% Gravity::make_radial_gravity() 21 0.2992 0.3135 0.3229 9.21% AmrLevel::FillPatch() 41 0.1956 0.2066 0.2142 6.11% Gravity::get_new_grav_vector() 11 0.2053 0.2063 0.2072 5.91% Castro::construct_old_gravity() 10 0.1805 0.1924 0.2004 5.71% Gravity::get_old_grav_vector() 10 0.1794 0.1916 0.1993 5.68% Amr::init() 1 0.1959 0.1963 0.1965 5.60% Castro::construct_new_gravity() 10 0.1825 0.1835 0.1847 5.27% Amr::initialInit() 1 0.1827 0.183 0.1835 5.23% Castro::initialize_do_advance() 10 0.1615 0.1722 0.1826 5.21% FillPatchIterator::Initialize 41 0.1624 0.1728 0.1817 5.18% Amr::InitializeInit() 1 0.08833 0.115 0.1565 4.46% Amr::defBaseLevel() 1 0.08833 0.115 0.1565 4.46% check_for_negative_density() 10 0.03886 0.06717 0.1406 4.01% FillPatchIterator::FillFromLevel0() 41 0.1159 0.1279 0.1366 3.89% FillPatchSingleLevel 41 0.1158 0.1278 0.1365 3.89% Castro::initData() 1 0.06571 0.09581 0.1342 3.83% Castro::expand_state() 10 0.1097 0.1174 0.1266 3.61% Castro::clean_state() 62 0.1144 0.1155 0.1172 3.34% FabArray::ParallelCopy() 41 0.08444 0.0959 0.1076 3.07% Castro::do_old_sources() 10 0.09421 0.09962 0.104 2.97% amrex::Copy() 193 0.0751 0.0835 0.09876 2.82% Castro::estTimeStep() 21 0.0293 0.06806 0.09738 2.78% Amr::FinalizeInit() 1 0.02625 0.068 0.09447 2.69% FabArray::setVal() 143 0.06785 0.07458 0.08094 2.31% Castro::initialize_advance() 10 0.07378 0.07755 0.08018 2.29% Castro::computeInitialDt() 2 0.002211 0.04388 0.07035 2.01% Castro::do_new_sources() 10 0.06259 0.06572 0.06912 1.97% Castro::computeTemp() 63 0.06629 0.06716 0.06818 1.94% FabArray::ParallelCopy_finish() 41 0.03284 0.05126 0.06758 1.93% FabArray::ParallelCopy_nowait() 41 0.03999 0.04455 0.05152 1.47% Castro::reset_internal_energy(MultiFab) 63 0.04692 0.04757 0.04857 1.38% Castro::reset_internal_energy(Fab) 1008 0.04664 0.04728 0.04827 1.38% Castro::normalize_species() 62 0.04102 0.04175 0.04313 1.23% StateDataPhysBCFunct::() 41 0.02869 0.03185 0.03597 1.03% StateData::FillBoundary(geom) 41 0.02858 0.03173 0.03582 1.02% Castro::construct_new_source() 50 0.03058 0.03175 0.03316 0.95% Gravity::interpolate_monopole_grav() 21 0.02756 0.02884 0.0298 0.85% Castro::construct_new_gravity_source() 10 0.02402 0.02514 0.0263 0.75% Castro::post_init() 1 0.02352 0.02374 0.02408 0.69% Amr::writePlotFile() 2 0.02057 0.02093 0.02121 0.60% Castro::finalize_do_advance() 10 0.01153 0.01597 0.02052 0.58% Castro::post_timestep() 10 0.01547 0.01589 0.01654 0.47% Castro::apply_source_to_state() 20 0.01198 0.01343 0.01502 0.43% FabArray::Saxpy() 20 0.01192 0.01339 0.01497 0.43% Castro::check_for_nan() 20 0.0101 0.01159 0.01457 0.42% MultiFab::contains_nan() 20 0.01008 0.01156 0.01455 0.41% Castro::Castro() 1 0.009469 0.01202 0.01442 0.41% FabArray::setDomainBndry() 41 0.006833 0.01092 0.01288 0.37% VisMF::Write(FabArray) 2 0.008732 0.009224 0.01156 0.33% Castro::construct_old_source() 50 0.008202 0.01018 0.01102 0.31% Castro::construct_old_gravity_source() 10 0.008149 0.0101 0.01094 0.31% Castro::initMFs() 1 0.006295 0.008138 0.009819 0.28% Castro::computeNewDt() 9 0.009157 0.009187 0.009214 0.26% AmrLevel::AmrLevel(dm) 1 0.005259 0.006783 0.008107 0.23% StateData::define() 4 0.005242 0.006762 0.008081 0.23% Castro::enforce_min_density() 62 0.006957 0.007324 0.007615 0.22% Castro::swap_state_time_levels() 10 0.00336 0.004507 0.004994 0.14% Castro::finalize_advance() 10 0.003174 0.003372 0.00355 0.10% Castro::buildMetrics() 1 0.001598 0.002077 0.002548 0.07% Castro::post_regrid() 1 0.001498 0.001568 0.001649 0.05% Amr::InitAmr() 1 0.0003875 0.000569 0.0008695 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.388e-05 0.000324 0.0005242 0.01% DistributionMapping::LeastUsedCPUs() 1 8.187e-06 0.0003176 0.0005172 0.01% Castro::enforce_consistent_e() 1 7.704e-05 8.654e-05 9.723e-05 0.00% FabArrayBase::getCPC() 41 6.263e-05 7.641e-05 8.597e-05 0.00% Amr::writeSmallPlotFile() 1 2.919e-05 4.537e-05 7.371e-05 0.00% FabArrayBase::CPC::define() 2 2.108e-05 2.663e-05 3.717e-05 0.00% Castro::enforce_speed_limit() 62 2.418e-05 2.708e-05 2.927e-05 0.00% Amr::initSubcycle() 1 9.516e-06 1.459e-05 1.93e-05 0.00% Gravity::swapTimeLevels() 10 8.402e-06 1.093e-05 1.389e-05 0.00% Castro::create_source_corrector() 10 6.654e-06 8.784e-06 1.333e-05 0.00% Gravity::set_mass_offset() 10 8.543e-06 1.042e-05 1.226e-05 0.00% Castro::FluxRegCrseInit 10 6.637e-06 7.972e-06 9.552e-06 0.00% Castro::retry_advance_ctu() 10 6.584e-06 7.681e-06 8.843e-06 0.00% Castro::FluxRegFineAdd() 10 1.69e-06 2.132e-06 2.393e-06 0.00% DistributionMapping::Distribute() 1 9.63e-07 1.19e-06 1.454e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 37 B 47 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.01-20-g0c59bad946fd) finalized