Initializing AMReX (24.01-20-g0c59bad946fd)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.01-20-g0c59bad946fd) initialized Starting run at 06:40:45 UTC on 2024-01-23. Successfully read inputs file ... Castro git describe: 24.01-17-g29c5f4d16 AMReX git describe: 24.01-20-g0c59bad94 Microphysics git describe: 24.01-9-ga4d7ab4d reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013237982 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.363028688 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.339978789 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.33406503 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.329918108 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.331831065 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.37189646 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.31811493 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.310422619 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.311962499 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.311614077 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.00757629 seconds Ending run at 06:40:48 UTC on 2024-01-23. Run time = 3.528860904 Run time without initialization = 3.335865738 Average number of zones advanced per microsecond: 0.786 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.528 ... 3.528 ... 3.529 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3102 2.3711 2.4031 68.10% Gravity::make_radial_gravity() 21 0.297 0.3127 0.3333 9.44% check_for_negative_density() 10 0.03188 0.06709 0.1307 3.70% Castro::initData() 1 0.04809 0.08883 0.1283 3.64% Castro::estTimeStep() 21 0.03054 0.06774 0.1047 2.97% amrex::Copy() 193 0.06432 0.08137 0.09878 2.80% FabArray::ParallelCopy_finish() 41 0.03453 0.05778 0.09467 2.68% FabArray::setVal() 143 0.06294 0.07085 0.07728 2.19% Castro::reset_internal_energy(Fab) 1008 0.04597 0.04759 0.04881 1.38% Castro::normalize_species() 62 0.04115 0.04206 0.04304 1.22% FabArray::ParallelCopy_nowait() 41 0.03486 0.04099 0.04286 1.21% FillPatchIterator::Initialize 41 0.02725 0.03325 0.03567 1.01% StateData::FillBoundary(geom) 41 0.02904 0.0317 0.03445 0.98% Gravity::interpolate_monopole_grav() 21 0.02764 0.02947 0.0324 0.92% Castro::construct_new_gravity_source() 10 0.02151 0.02424 0.02618 0.74% Castro::computeTemp() 63 0.01829 0.01972 0.02048 0.58% Castro::initialize_do_advance() 10 0.0119 0.01762 0.01978 0.56% Castro::initialize_advance() 10 0.008476 0.01196 0.01522 0.43% MultiFab::contains_nan() 20 0.0107 0.01188 0.01458 0.41% FabArray::Saxpy() 20 0.01034 0.01251 0.01352 0.38% FabArray::setDomainBndry() 41 0.008726 0.01095 0.01345 0.38% VisMF::Write(FabArray) 2 0.008876 0.009483 0.01206 0.34% Castro::construct_old_gravity_source() 10 0.006442 0.009404 0.01031 0.29% Amr::writePlotFile() 2 0.006149 0.008804 0.009469 0.27% Castro::initMFs() 1 0.006372 0.006881 0.00773 0.22% Castro::enforce_min_density() 62 0.007012 0.007328 0.007699 0.22% Castro::construct_new_source() 50 0.005589 0.006328 0.006783 0.19% StateData::define() 4 0.005416 0.005718 0.006092 0.17% Castro::swap_state_time_levels() 10 0.003186 0.004268 0.004968 0.14% main() 1 0.003638 0.004262 0.00479 0.14% Gravity::get_new_grav_vector() 11 0.002787 0.0037 0.004142 0.12% Amr::coarseTimeStep() 10 0.001607 0.002452 0.002672 0.08% Gravity::get_old_grav_vector() 10 0.001479 0.001986 0.00227 0.06% Castro::buildMetrics() 1 0.001489 0.001591 0.001715 0.05% Castro::finalize_do_advance() 10 0.0005942 0.001071 0.001416 0.04% AmrLevel::FillPatch() 41 0.0008437 0.0009258 0.00102 0.03% Amr::InitAmr() 1 0.0003426 0.000383 0.0004889 0.01% Amr::timeStep() 10 0.0001592 0.0002137 0.0003576 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002915 0.0003132 0.0003314 0.01% Castro::clean_state() 62 0.0001348 0.0001564 0.0001707 0.00% StateDataPhysBCFunct::() 41 8.972e-05 0.0001215 0.0001588 0.00% Castro::do_advance_ctu() 10 0.0001228 0.0001369 0.000157 0.00% FillPatchIterator::FillFromLevel0() 41 9.235e-05 0.0001109 0.0001358 0.00% DistributionMapping::LeastUsedCPUs() 1 6.895e-06 0.0001078 0.0001316 0.00% Castro::finalize_advance() 10 7.391e-05 9.745e-05 0.0001188 0.00% Castro::do_old_sources() 10 7.732e-05 8.995e-05 9.947e-05 0.00% Castro::do_new_sources() 10 5.158e-05 7.284e-05 9.841e-05 0.00% Castro::enforce_consistent_e() 1 8.091e-05 8.907e-05 9.831e-05 0.00% Castro::Castro() 1 6.192e-05 7.44e-05 9.233e-05 0.00% FabArray::ParallelCopy() 41 7.313e-05 8.351e-05 9.067e-05 0.00% Castro::construct_old_source() 50 5.196e-05 7.462e-05 8.769e-05 0.00% FillPatchSingleLevel 41 6.356e-05 7.209e-05 8.517e-05 0.00% Amr::writeSmallPlotFile() 1 3.263e-05 5.865e-05 7.465e-05 0.00% Amr::FinalizeInit() 1 3.932e-06 1.261e-05 6.801e-05 0.00% FabArrayBase::getCPC() 41 4.164e-05 5.02e-05 5.918e-05 0.00% Castro::construct_old_gravity() 10 3.377e-05 3.977e-05 5.515e-05 0.00% Castro::advance() 10 3.933e-05 4.574e-05 5.059e-05 0.00% Castro::apply_source_to_state() 20 3.384e-05 4.404e-05 5.031e-05 0.00% Castro::subcycle_advance_ctu() 10 3.553e-05 4.47e-05 4.926e-05 0.00% Castro::expand_state() 10 2.164e-05 2.95e-05 4.025e-05 0.00% Castro::construct_new_gravity() 10 3.093e-05 3.574e-05 4.023e-05 0.00% Amr::defBaseLevel() 1 1.636e-05 2.386e-05 3.425e-05 0.00% FabArrayBase::CPC::define() 2 2.147e-05 2.505e-05 3.209e-05 0.00% Castro::enforce_speed_limit() 62 2.611e-05 2.872e-05 3.135e-05 0.00% Castro::check_for_nan() 20 2.309e-05 2.626e-05 3.117e-05 0.00% Castro::post_init() 1 1.476e-05 1.719e-05 2.425e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.485e-05 1.92e-05 2.224e-05 0.00% Castro::post_timestep() 10 1.215e-05 1.385e-05 1.714e-05 0.00% Gravity::swapTimeLevels() 10 7.991e-06 1.027e-05 1.291e-05 0.00% Gravity::set_mass_offset() 10 8.667e-06 1.087e-05 1.258e-05 0.00% Amr::initSubcycle() 1 9.963e-06 1.09e-05 1.181e-05 0.00% Castro::create_source_corrector() 10 6.716e-06 8.785e-06 1.05e-05 0.00% Castro::computeNewDt() 9 6.909e-06 8.077e-06 1.013e-05 0.00% Castro::FluxRegCrseInit 10 6.468e-06 8.158e-06 9.424e-06 0.00% Castro::retry_advance_ctu() 10 7.131e-06 7.884e-06 8.957e-06 0.00% Amr::initialInit() 1 1.443e-06 2.769e-06 8.763e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.813e-06 5.071e-06 6.7e-06 0.00% Castro::post_regrid() 1 1.967e-06 3.41e-06 5.031e-06 0.00% Amr::InitializeInit() 1 1.864e-06 2.536e-06 4.436e-06 0.00% Castro::computeInitialDt() 2 3.021e-06 3.578e-06 4.01e-06 0.00% Amr::init() 1 1.92e-06 2.475e-06 3.346e-06 0.00% Castro::FluxRegFineAdd() 10 2.068e-06 2.327e-06 2.898e-06 0.00% DistributionMapping::Distribute() 1 9.67e-07 1.082e-06 1.187e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.528 3.528 3.529 100.00% Amr::coarseTimeStep() 10 3.324 3.324 3.324 94.18% Amr::timeStep() 10 3.311 3.311 3.312 93.84% Castro::advance() 10 3.294 3.295 3.295 93.37% Castro::subcycle_advance_ctu() 10 3.214 3.218 3.226 91.42% Castro::do_advance_ctu() 10 3.214 3.218 3.226 91.42% Castro::construct_ctu_hydro_source() 10 2.456 2.459 2.463 69.79% Gravity::make_radial_gravity() 21 0.3151 0.3299 0.3468 9.83% AmrLevel::FillPatch() 41 0.1854 0.2067 0.2223 6.30% Castro::construct_old_gravity() 10 0.1917 0.2056 0.2205 6.25% Gravity::get_old_grav_vector() 10 0.1907 0.2049 0.2199 6.23% Gravity::get_new_grav_vector() 11 0.209 0.2101 0.2108 5.97% FillPatchIterator::Initialize 41 0.152 0.1751 0.195 5.53% Amr::init() 1 0.1923 0.1924 0.1925 5.45% Castro::construct_new_gravity() 10 0.1845 0.1848 0.1856 5.26% Castro::initialize_do_advance() 10 0.1599 0.168 0.18 5.10% Amr::initialInit() 1 0.1788 0.1791 0.1794 5.08% FillPatchIterator::FillFromLevel0() 41 0.1067 0.1309 0.159 4.51% FillPatchSingleLevel 41 0.1066 0.1308 0.1589 4.50% Amr::InitializeInit() 1 0.06821 0.1096 0.15 4.25% Amr::defBaseLevel() 1 0.0682 0.1096 0.15 4.25% Castro::initData() 1 0.05232 0.09288 0.1321 3.74% check_for_negative_density() 10 0.03188 0.06709 0.1307 3.70% FabArray::ParallelCopy() 41 0.07469 0.09893 0.1297 3.68% Castro::expand_state() 10 0.1026 0.1126 0.1228 3.48% Castro::clean_state() 62 0.1142 0.1162 0.1184 3.35% Amr::FinalizeInit() 1 0.02894 0.06949 0.1109 3.14% Castro::do_old_sources() 10 0.0925 0.1015 0.107 3.03% Castro::estTimeStep() 21 0.03054 0.06774 0.1047 2.97% amrex::Copy() 193 0.06432 0.08137 0.09878 2.80% FabArray::ParallelCopy_finish() 41 0.03453 0.05778 0.09467 2.68% Castro::computeInitialDt() 2 0.002348 0.04274 0.08414 2.38% Castro::initialize_advance() 10 0.06462 0.07353 0.07761 2.20% FabArray::setVal() 143 0.06294 0.07085 0.07728 2.19% Castro::computeTemp() 63 0.06459 0.06763 0.06952 1.97% Castro::do_new_sources() 10 0.06028 0.06375 0.06831 1.94% Castro::reset_internal_energy(MultiFab) 63 0.0463 0.04791 0.04914 1.39% Castro::reset_internal_energy(Fab) 1008 0.04597 0.04759 0.04881 1.38% Castro::normalize_species() 62 0.04115 0.04206 0.04304 1.22% FabArray::ParallelCopy_nowait() 41 0.03493 0.04107 0.04292 1.22% StateDataPhysBCFunct::() 41 0.02914 0.03182 0.0346 0.98% StateData::FillBoundary(geom) 41 0.02904 0.0317 0.03445 0.98% Castro::construct_new_source() 50 0.0271 0.03057 0.03272 0.93% Gravity::interpolate_monopole_grav() 21 0.02764 0.02947 0.0324 0.92% Castro::post_init() 1 0.02622 0.02641 0.02671 0.76% Castro::construct_new_gravity_source() 10 0.02151 0.02424 0.02618 0.74% Amr::writePlotFile() 2 0.02075 0.02102 0.02126 0.60% Castro::finalize_do_advance() 10 0.01206 0.01707 0.02059 0.58% Castro::post_timestep() 10 0.01553 0.01594 0.01679 0.48% Castro::check_for_nan() 20 0.01073 0.0119 0.0146 0.41% MultiFab::contains_nan() 20 0.0107 0.01188 0.01458 0.41% Castro::apply_source_to_state() 20 0.01037 0.01255 0.01356 0.38% FabArray::Saxpy() 20 0.01034 0.01251 0.01352 0.38% FabArray::setDomainBndry() 41 0.008726 0.01095 0.01345 0.38% VisMF::Write(FabArray) 2 0.008876 0.009483 0.01206 0.34% Castro::Castro() 1 0.01021 0.01082 0.01169 0.33% Castro::construct_old_source() 50 0.006493 0.009479 0.01039 0.29% Castro::construct_old_gravity_source() 10 0.006442 0.009404 0.01031 0.29% Castro::computeNewDt() 9 0.009013 0.009019 0.009028 0.26% Castro::initMFs() 1 0.006372 0.006881 0.00773 0.22% Castro::enforce_min_density() 62 0.007012 0.007328 0.007699 0.22% AmrLevel::AmrLevel(dm) 1 0.005439 0.005737 0.006114 0.17% StateData::define() 4 0.005416 0.005718 0.006092 0.17% Castro::swap_state_time_levels() 10 0.003186 0.004268 0.004968 0.14% Castro::finalize_advance() 10 0.003144 0.003312 0.003489 0.10% Castro::post_regrid() 1 0.001558 0.001654 0.001944 0.06% Castro::buildMetrics() 1 0.00161 0.001727 0.001873 0.05% Amr::InitAmr() 1 0.0003535 0.0003939 0.000499 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.167e-05 0.0001139 0.0001392 0.00% DistributionMapping::LeastUsedCPUs() 1 6.895e-06 0.0001078 0.0001316 0.00% Castro::enforce_consistent_e() 1 8.091e-05 8.907e-05 9.831e-05 0.00% FabArrayBase::getCPC() 41 6.348e-05 7.525e-05 8.711e-05 0.00% Amr::writeSmallPlotFile() 1 3.263e-05 5.865e-05 7.465e-05 0.00% FabArrayBase::CPC::define() 2 2.147e-05 2.505e-05 3.209e-05 0.00% Castro::enforce_speed_limit() 62 2.611e-05 2.872e-05 3.135e-05 0.00% Gravity::swapTimeLevels() 10 7.991e-06 1.027e-05 1.291e-05 0.00% Gravity::set_mass_offset() 10 8.667e-06 1.087e-05 1.258e-05 0.00% Amr::initSubcycle() 1 9.963e-06 1.09e-05 1.181e-05 0.00% Castro::create_source_corrector() 10 6.716e-06 8.785e-06 1.05e-05 0.00% Castro::FluxRegCrseInit 10 6.468e-06 8.158e-06 9.424e-06 0.00% Castro::retry_advance_ctu() 10 7.131e-06 7.884e-06 8.957e-06 0.00% Castro::FluxRegFineAdd() 10 2.068e-06 2.327e-06 2.898e-06 0.00% DistributionMapping::Distribute() 1 9.67e-07 1.082e-06 1.187e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 32 B 37 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.01-20-g0c59bad946fd) finalized